Gene annotation
Transcriptome id Sobic.004G251300.1,Sobic.004G251300.3,Sobic.004G251300.2
Synonym ATHB1, Sb04g029080, HAT5, ATHB-1, HD-ZIP-1, HB-1
Functional annotation homeobox associated leucine zipper, putative, expressed
UniProt A0A194YRG9 , A0A194YSM2
Pfam PF02183 PF00046
Panther DB PTHR24326 PTHR24326:SF136
NCBI CDD -
KEGG Orthology K09338; homeobox-leucine zipper protein
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G01470 : homeobox 1
RAP-DB (Rice) LOC_Os02g49700.1 : homeobox associated leucine zipper, putative, expressed
MaizeGDB (Corn) Zm00025a053163 , Zm00025a014128 , Zm00025a031035 , Zm00025a015018 , Zm00025a032630 , Zm00025a001186 , Zm00025a047342 , Zm00025a021900
Brachypodium KQK01491 , KQK01492 , PNT69475 , KQJ90600 , KQJ90092
Barley HORVU4Hr1G078410.4 , HORVU4Hr1G078410.5 , HORVU4Hr1G078410.2 , HORVU4Hr1G078410.3 , HORVU6Hr1G072810.4 , HORVU5Hr1G070260.1 , HORVU5Hr1G070260.3 , HORVU5Hr1G070260.5 , HORVU6Hr1G072810.6 , HORVU6Hr1G072810.7 , HORVU6Hr1G072810.5 , HORVU6Hr1G072810.2 , HORVU6Hr1G072810.3 , HORVU6Hr1G072810.1
Wheat TraesCS6B02G321100 , TraesCS4A02G016600 , TraesCS6D02G272000 , TraesCS6D02G272000 , TraesCS4B02G305300 , TraesCS4B02G287600 , TraesCS5A02G249000 , TraesCS5D02G256200 , TraesCS4A02G405800 , TraesCS4D02G303500 , TraesCS5B02G246700 , TraesCS4D02G286400 , TraesCS4D02G286400 , TraesCS6A02G290800
Populus -


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cDNA sequences
Sobic.004G251300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G065900 expressed protein -
2 Sobic.001G351100 LOL3, putative, expressed -
3 Sobic.005G072200 lipase, putative, expressed -
4 Sobic.003G397200 - -
5 Sobic.003G002600 -(PubMedID : 23001790)@GLK2(PubMedID : 24676859)@GLK genes are members of the GARP superfamily and functions in a BS or M cell-type specific manner to regulate the proplastid to chloroplast transition(PubMedID : 22968911)@myb-like DNA-binding domain containing protein, expressed -
6 Sobic.001G102300 homeobox domain containing protein, expressed -
7 Sobic.001G212350 - -
8 Sobic.009G195000 CIN-like (ClassII) Subclade 9 TCP(PubMedID : 21444336)@down-regulated TF in developmental senescence(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
9 Sobic.009G008100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
10 Sobic.006G145200 expressed protein -
11 Sobic.005G012200 STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
12 Sobic.001G191600 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
13 Sobic.003G403500 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
14 Sobic.001G387600 ethylene-insensitive 3, putative, expressed K14514: ethylene-insensitive protein 3
15 Sobic.010G076300 - -
16 Sobic.009G034600 expressed protein -
17 Sobic.001G351400 Metacaspase 1("PubMedID : 26759170,PubMedID : 24597475")@ICE-like protease p20 domain containing protein, putative, expressed -
18 Sobic.003G372800 expressed protein -
19 Sobic.001G222250 - -
20 Sobic.006G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family


Gene co-expression network
sample Sobic004G251300 Sobic004G251300 Sobic006G065900 Sobic006G065900 Sobic004G251300--Sobic006G065900 Sobic001G351100 Sobic001G351100 Sobic004G251300--Sobic001G351100 Sobic005G072200 Sobic005G072200 Sobic004G251300--Sobic005G072200 Sobic003G397200 Sobic003G397200 Sobic004G251300--Sobic003G397200 Sobic003G002600 Sobic003G002600 Sobic004G251300--Sobic003G002600 Sobic001G102300 Sobic001G102300 Sobic004G251300--Sobic001G102300 Sobic001G212350 Sobic001G212350 Sobic004G251300--Sobic001G212350 Sobic009G195000 Sobic009G195000 Sobic004G251300--Sobic009G195000 Sobic009G008100 Sobic009G008100 Sobic004G251300--Sobic009G008100 Sobic007G025900 Sobic007G025900 Sobic006G065900--Sobic007G025900 Sobic001G351400 Sobic001G351400 Sobic006G065900--Sobic001G351400 Sobic006G065900--Sobic004G251300 Sobic002G201900 Sobic002G201900 Sobic006G065900--Sobic002G201900 Sobic006G065900--Sobic005G072200 Sobic006G065900--Sobic003G002600 Sobic003G359900 Sobic003G359900 Sobic006G065900--Sobic003G359900 Sobic010G063200 Sobic010G063200 Sobic006G065900--Sobic010G063200 Sobic005G045200 Sobic005G045200 Sobic006G065900--Sobic005G045200 Sobic001G351100--Sobic005G072200 Sobic003G422700 Sobic003G422700 Sobic001G351100--Sobic003G422700 Sobic006G042200 Sobic006G042200 Sobic001G351100--Sobic006G042200 Sobic001G351100--Sobic004G251300 Sobic004G340800 Sobic004G340800 Sobic001G351100--Sobic004G340800 Sobic002G137800 Sobic002G137800 Sobic001G351100--Sobic002G137800 Sobic002G073900 Sobic002G073900 Sobic001G351100--Sobic002G073900 Sobic003G403500 Sobic003G403500 Sobic001G351100--Sobic003G403500 Sobic007G054100 Sobic007G054100 Sobic001G351100--Sobic007G054100 Sobic005G072200--Sobic003G359900 Sobic006G052200 Sobic006G052200 Sobic005G072200--Sobic006G052200 Sobic005G072200--Sobic002G073900 Sobic010G080300 Sobic010G080300 Sobic005G072200--Sobic010G080300 Sobic009G190800 Sobic009G190800 Sobic005G072200--Sobic009G190800 Sobic005G072200--Sobic001G351100 Sobic003G402200 Sobic003G402200 Sobic005G072200--Sobic003G402200 Sobic004G096100 Sobic004G096100 Sobic005G072200--Sobic004G096100 Sobic001G314900 Sobic001G314900 Sobic005G072200--Sobic001G314900 Sobic010G241300 Sobic010G241300 Sobic003G397200--Sobic010G241300 Sobic008G186400 Sobic008G186400 Sobic003G397200--Sobic008G186400 Sobic008G183200 Sobic008G183200 Sobic003G397200--Sobic008G183200 Sobic005G188600 Sobic005G188600 Sobic003G397200--Sobic005G188600 Sobic006G102400 Sobic006G102400 Sobic003G397200--Sobic006G102400 Sobic008G187900 Sobic008G187900 Sobic003G397200--Sobic008G187900 Sobic009G034600 Sobic009G034600 Sobic003G397200--Sobic009G034600 Sobic003G263001 Sobic003G263001 Sobic003G397200--Sobic003G263001 Sobic007G059500 Sobic007G059500 Sobic003G397200--Sobic007G059500 Sobic003G162100 Sobic003G162100 Sobic003G002600--Sobic003G162100 Sobic003G002600--Sobic003G403500 Sobic001G236400 Sobic001G236400 Sobic003G002600--Sobic001G236400 Sobic004G131900 Sobic004G131900 Sobic003G002600--Sobic004G131900 Sobic005G012200 Sobic005G012200 Sobic003G002600--Sobic005G012200 Sobic003G002600--Sobic006G065900 Sobic003G002600--Sobic002G201900 Sobic003G002600--Sobic004G251300 Sobic001G414000 Sobic001G414000 Sobic003G002600--Sobic001G414000 Sobic001G102300--Sobic009G034600 Sobic003G108600 Sobic003G108600 Sobic001G102300--Sobic003G108600 Sobic003G068800 Sobic003G068800 Sobic001G102300--Sobic003G068800 Sobic010G214000 Sobic010G214000 Sobic001G102300--Sobic010G214000 Sobic001G102300--Sobic004G096100 Sobic001G102300--Sobic001G351400 Sobic001G300201 Sobic001G300201 Sobic001G102300--Sobic001G300201 Sobic004G359200 Sobic004G359200 Sobic001G102300--Sobic004G359200 Sobic003G292600 Sobic003G292600 Sobic001G102300--Sobic003G292600 Sobic006G089500 Sobic006G089500 Sobic001G212350--Sobic006G089500 Sobic001G212350--Sobic004G251300 Sobic009G027350 Sobic009G027350 Sobic001G212350--Sobic009G027350 Sobic004G042200 Sobic004G042200 Sobic001G212350--Sobic004G042200 Sobic006G145200 Sobic006G145200 Sobic001G212350--Sobic006G145200 Sobic003G122500 Sobic003G122500 Sobic001G212350--Sobic003G122500 Sobic006G031800 Sobic006G031800 Sobic001G212350--Sobic006G031800 Sobic010G143800 Sobic010G143800 Sobic001G212350--Sobic010G143800 Sobic001G081200 Sobic001G081200 Sobic001G212350--Sobic001G081200 Sobic004G281900 Sobic004G281900 Sobic009G195000--Sobic004G281900 Sobic010G140600 Sobic010G140600 Sobic009G195000--Sobic010G140600 Sobic010G269400 Sobic010G269400 Sobic009G195000--Sobic010G269400 Sobic009G068300 Sobic009G068300 Sobic009G195000--Sobic009G068300 Sobic003G007700 Sobic003G007700 Sobic009G195000--Sobic003G007700 Sobic006G258700 Sobic006G258700 Sobic009G195000--Sobic006G258700 Sobic001G286600 Sobic001G286600 Sobic009G195000--Sobic001G286600 Sobic008G063200 Sobic008G063200 Sobic009G195000--Sobic008G063200 Sobic002G000600 Sobic002G000600 Sobic009G195000--Sobic002G000600 Sobic009G057700 Sobic009G057700 Sobic009G008100--Sobic009G057700 Sobic009G008100--Sobic006G042200 Sobic003G308700 Sobic003G308700 Sobic009G008100--Sobic003G308700 Sobic009G008100--Sobic002G073900 Sobic004G227300 Sobic004G227300 Sobic009G008100--Sobic004G227300 Sobic001G222250 Sobic001G222250 Sobic009G008100--Sobic001G222250 Sobic002G040800 Sobic002G040800 Sobic009G008100--Sobic002G040800 Sobic001G261597 Sobic001G261597 Sobic009G008100--Sobic001G261597 Sobic006G043300 Sobic006G043300 Sobic009G008100--Sobic006G043300
Octagon: transcription factors


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