Gene annotation
Transcriptome id Sobic.003G403500.1
Synonym Sb03g043920
Functional annotation lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
UniProt C5XG95
Pfam PF05212
Panther DB PTHR31210 PTHR31210:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G12840 : Protein of unknown function (DUF707)
RAP-DB (Rice) LOC_Os01g69050.1 : lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
MaizeGDB (Corn) Zm00025a013175 , Zm00025a026279 , Zm00025a039327
Brachypodium KQK11229 , KQK11228 , KQJ90917 , KQK11230 , KQK16447
Barley HORVU3Hr1G093980.5 , HORVU3Hr1G093980.6 , HORVU3Hr1G093980.7 , HORVU3Hr1G093980.1 , HORVU3Hr1G093980.2 , HORVU7Hr1G121420.3 , HORVU3Hr1G093980.14 , HORVU3Hr1G093980.15 , HORVU3Hr1G093980.12 , HORVU3Hr1G093980.13 , HORVU3Hr1G093980.10 , HORVU3Hr1G093980.11 , HORVU7Hr1G121420.5 , HORVU7Hr1G121420.4 , HORVU7Hr1G121420.7 , HORVU7Hr1G121420.6 , HORVU7Hr1G121420.1 , HORVU7Hr1G121420.2 , HORVU4Hr1G015150.2 , HORVU4Hr1G015150.3 , HORVU4Hr1G015150.1 , HORVU3Hr1G093980.4 , HORVU3Hr1G093980.8 , HORVU3Hr1G093980.3 , HORVU3Hr1G093980.9
Wheat TraesCS3A02G426500 , TraesCS3A02G426500 , TraesCS7B02G474400 , TraesCS7A02G551100 , TraesCS4A02G226600 , TraesCS7D02G536600 , TraesCS3B02G462700 , TraesCS3D02G421300
Populus -


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cDNA sequences
Sobic.003G403500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G001000 transmembrane amino acid transporter protein, putative, expressed -
2 Sobic.001G500800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-coumarate--CoA ligase-like 7, putative, expressed K01904: 4-coumarate--CoA ligase
3 Sobic.003G375900 amino acid transporter, putative, expressed -
4 Sobic.002G367100 protein of unknown function DUF1675 domain containing protein, expressed -
5 Sobic.003G002600 -(PubMedID : 23001790)@GLK2(PubMedID : 24676859)@GLK genes are members of the GARP superfamily and functions in a BS or M cell-type specific manner to regulate the proplastid to chloroplast transition(PubMedID : 22968911)@myb-like DNA-binding domain containing protein, expressed -
6 Sobic.004G201700 glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
7 Sobic.004G131900 - -
8 Sobic.002G200700 expressed protein -
9 Sobic.004G340800 OsFBX70 - F-box domain containing protein, expressed -
10 Sobic.001G314900 homeobox domain containing protein, expressed -
11 Sobic.003G263001 - -
12 Sobic.009G082000 TKL_IRAK_DUF26-lc.3 - DUF26 kinases have homology to DUF26 containing loci, expressed -
13 Sobic.005G012200 STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
14 Sobic.008G144800 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
15 Sobic.001G351100 LOL3, putative, expressed -
16 Sobic.010G196500 zinc-binding protein, putative, expressed -
17 Sobic.010G080300 peptidase, putative, expressed K01436: amidohydrolase
18 Sobic.006G130800 transporter family protein, putative, expressed K08150: SLC2A13, MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13
19 Sobic.005G072200 lipase, putative, expressed -
20 Sobic.010G267700 receptor protein kinase CLAVATA1 precursor, putative, expressed -


Gene co-expression network
sample Sobic003G403500 Sobic003G403500 Sobic002G001000 Sobic002G001000 Sobic003G403500--Sobic002G001000 Sobic001G500800 Sobic001G500800 Sobic003G403500--Sobic001G500800 Sobic003G375900 Sobic003G375900 Sobic003G403500--Sobic003G375900 Sobic002G367100 Sobic002G367100 Sobic003G403500--Sobic002G367100 Sobic003G002600 Sobic003G002600 Sobic003G403500--Sobic003G002600 Sobic004G201700 Sobic004G201700 Sobic003G403500--Sobic004G201700 Sobic004G131900 Sobic004G131900 Sobic003G403500--Sobic004G131900 Sobic002G200700 Sobic002G200700 Sobic003G403500--Sobic002G200700 Sobic004G340800 Sobic004G340800 Sobic003G403500--Sobic004G340800 Sobic007G227700 Sobic007G227700 Sobic002G001000--Sobic007G227700 Sobic002G001000--Sobic002G200700 Sobic004G207400 Sobic004G207400 Sobic002G001000--Sobic004G207400 Sobic010G140600 Sobic010G140600 Sobic002G001000--Sobic010G140600 Sobic001G072700 Sobic001G072700 Sobic002G001000--Sobic001G072700 Sobic010G013200 Sobic010G013200 Sobic002G001000--Sobic010G013200 Sobic008G089900 Sobic008G089900 Sobic002G001000--Sobic008G089900 Sobic002G001000--Sobic003G403500 Sobic003G224100 Sobic003G224100 Sobic002G001000--Sobic003G224100 Sobic001G488700 Sobic001G488700 Sobic001G500800--Sobic001G488700 Sobic010G196500 Sobic010G196500 Sobic001G500800--Sobic010G196500 Sobic001G381200 Sobic001G381200 Sobic001G500800--Sobic001G381200 Sobic006G213500 Sobic006G213500 Sobic001G500800--Sobic006G213500 Sobic001G500800--Sobic002G001000 Sobic002G187700 Sobic002G187700 Sobic001G500800--Sobic002G187700 Sobic001G500800--Sobic003G403500 Sobic003G302800 Sobic003G302800 Sobic001G500800--Sobic003G302800 Sobic006G175800 Sobic006G175800 Sobic001G500800--Sobic006G175800 Sobic001G414000 Sobic001G414000 Sobic003G375900--Sobic001G414000 Sobic003G375900--Sobic003G403500 Sobic001G525900 Sobic001G525900 Sobic003G375900--Sobic001G525900 Sobic006G164300 Sobic006G164300 Sobic003G375900--Sobic006G164300 Sobic002G257100 Sobic002G257100 Sobic003G375900--Sobic002G257100 Sobic001G314900 Sobic001G314900 Sobic003G375900--Sobic001G314900 Sobic001G121100 Sobic001G121100 Sobic003G375900--Sobic001G121100 Sobic003G262900 Sobic003G262900 Sobic003G375900--Sobic003G262900 Sobic010G267700 Sobic010G267700 Sobic003G375900--Sobic010G267700 Sobic002G367100--Sobic003G403500 Sobic002G367100--Sobic010G267700 Sobic006G130800 Sobic006G130800 Sobic002G367100--Sobic006G130800 Sobic002G367100--Sobic003G002600 Sobic010G080300 Sobic010G080300 Sobic002G367100--Sobic010G080300 Sobic002G367100--Sobic003G375900 Sobic002G367100--Sobic004G340800 Sobic001G325700 Sobic001G325700 Sobic002G367100--Sobic001G325700 Sobic009G062500 Sobic009G062500 Sobic002G367100--Sobic009G062500 Sobic003G162100 Sobic003G162100 Sobic003G002600--Sobic003G162100 Sobic003G002600--Sobic003G403500 Sobic001G236400 Sobic001G236400 Sobic003G002600--Sobic001G236400 Sobic003G002600--Sobic004G131900 Sobic005G012200 Sobic005G012200 Sobic003G002600--Sobic005G012200 Sobic006G065900 Sobic006G065900 Sobic003G002600--Sobic006G065900 Sobic002G201900 Sobic002G201900 Sobic003G002600--Sobic002G201900 Sobic004G251300 Sobic004G251300 Sobic003G002600--Sobic004G251300 Sobic003G002600--Sobic001G414000 Sobic008G101400 Sobic008G101400 Sobic004G201700--Sobic008G101400 Sobic008G072700 Sobic008G072700 Sobic004G201700--Sobic008G072700 Sobic007G213700 Sobic007G213700 Sobic004G201700--Sobic007G213700 Sobic006G258700 Sobic006G258700 Sobic004G201700--Sobic006G258700 Sobic008G015100 Sobic008G015100 Sobic004G201700--Sobic008G015100 Sobic004G224500 Sobic004G224500 Sobic004G201700--Sobic004G224500 Sobic003G037300 Sobic003G037300 Sobic004G201700--Sobic003G037300 Sobic004G201700--Sobic001G314900 Sobic004G201700--Sobic001G072700 Sobic001G298700 Sobic001G298700 Sobic004G131900--Sobic001G298700 Sobic004G131900--Sobic003G002600 Sobic010G262500 Sobic010G262500 Sobic004G131900--Sobic010G262500 Sobic004G131900--Sobic006G175800 Sobic004G131900--Sobic003G403500 Sobic004G131900--Sobic001G500800 Sobic004G131900--Sobic010G196500 Sobic004G131900--Sobic001G488700 Sobic007G105400 Sobic007G105400 Sobic004G131900--Sobic007G105400 Sobic002G200700--Sobic003G224100 Sobic002G200700--Sobic002G001000 Sobic002G200700--Sobic002G201900 Sobic003G007700 Sobic003G007700 Sobic002G200700--Sobic003G007700 Sobic006G064200 Sobic006G064200 Sobic002G200700--Sobic006G064200 Sobic010G269400 Sobic010G269400 Sobic002G200700--Sobic010G269400 Sobic002G136100 Sobic002G136100 Sobic002G200700--Sobic002G136100 Sobic006G130000 Sobic006G130000 Sobic002G200700--Sobic006G130000 Sobic002G200700--Sobic006G258700 Sobic002G137800 Sobic002G137800 Sobic004G340800--Sobic002G137800 Sobic004G340800--Sobic003G403500 Sobic001G351100 Sobic001G351100 Sobic004G340800--Sobic001G351100 Sobic005G072200 Sobic005G072200 Sobic004G340800--Sobic005G072200 Sobic004G092000 Sobic004G092000 Sobic004G340800--Sobic004G092000 Sobic002G073900 Sobic002G073900 Sobic004G340800--Sobic002G073900 Sobic010G199900 Sobic010G199900 Sobic004G340800--Sobic010G199900 Sobic004G340800--Sobic001G414000 Sobic005G045200 Sobic005G045200 Sobic004G340800--Sobic005G045200
Octagon: transcription factors


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