Gene annotation
Transcriptome id Sobic.001G500800.2,Sobic.001G500800.1,Sobic.001G500800.3,Sobic.001G500800.4
Synonym Sb01g046790
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
4-coumarate--CoA ligase-like 7, putative, expressed
UniProt A0A1Z5SBE8 , A0A1B6QQG9 , A0A1B6QQG1
Pfam PF00501 PF13193 PF00501
Panther DB PTHR24096 PTHR24096 PTHR24096:SF213
NCBI CDD KOG1176; Acyl-CoA synthetase
KEGG Orthology K01904; 4-coumarate--CoA ligase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT4G05160 : AMP-dependent synthetase and ligase family protein
RAP-DB (Rice) LOC_Os03g05780.1 : 4-coumarate--CoA ligase-like 7, putative, expressed
MaizeGDB (Corn) Zm00025a007071 , Zm00025a000699
Brachypodium KQK23604
Barley HORVU4Hr1G072150.1 , HORVU4Hr1G072150.4 , HORVU4Hr1G072150.3 , HORVU4Hr1G072150.2
Wheat TraesCS4A02G036200 , TraesCS4B02G269200 , TraesCS4B02G269200 , TraesCS4D02G268400
Populus -


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cDNA sequences
Sobic.001G500800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G488700 sucrose transporter 2(PubMedID : 26465154)@sucrose transporter 2(PubMedID : 26465154)@sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
2 Sobic.010G196500 zinc-binding protein, putative, expressed -
3 Sobic.001G381200 vacuolar-sorting receptor precursor, putative, expressed -
4 Sobic.006G213500 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
5 Sobic.002G001000 transmembrane amino acid transporter protein, putative, expressed -
6 Sobic.002G187700 expressed protein -
7 Sobic.003G403500 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
8 Sobic.003G302800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
9 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
10 Sobic.002G193100 expressed protein -
11 Sobic.007G169300 expressed protein -
12 Sobic.003G343500 NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed K17871: NADH:ubiquinone reductase (non-electrogenic)
13 Sobic.005G012200 STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
14 Sobic.008G144800 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
15 Sobic.001G151400 nicotianamine synthase, putative, expressed K05953: nicotianamine synthase
16 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
17 Sobic.001G476700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
18 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
19 Sobic.004G233200 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
20 Sobic.009G011600 expressed protein -


Gene co-expression network
sample Sobic001G500800 Sobic001G500800 Sobic001G488700 Sobic001G488700 Sobic001G500800--Sobic001G488700 Sobic010G196500 Sobic010G196500 Sobic001G500800--Sobic010G196500 Sobic001G381200 Sobic001G381200 Sobic001G500800--Sobic001G381200 Sobic006G213500 Sobic006G213500 Sobic001G500800--Sobic006G213500 Sobic002G001000 Sobic002G001000 Sobic001G500800--Sobic002G001000 Sobic002G187700 Sobic002G187700 Sobic001G500800--Sobic002G187700 Sobic003G403500 Sobic003G403500 Sobic001G500800--Sobic003G403500 Sobic003G302800 Sobic003G302800 Sobic001G500800--Sobic003G302800 Sobic006G175800 Sobic006G175800 Sobic001G500800--Sobic006G175800 Sobic008G059100 Sobic008G059100 Sobic001G488700--Sobic008G059100 Sobic001G488700--Sobic001G500800 Sobic001G488700--Sobic010G196500 Sobic001G488700--Sobic002G187700 Sobic004G233200 Sobic004G233200 Sobic001G488700--Sobic004G233200 Sobic001G488700--Sobic006G175800 Sobic001G488700--Sobic003G302800 Sobic001G481900 Sobic001G481900 Sobic001G488700--Sobic001G481900 Sobic002G266000 Sobic002G266000 Sobic001G488700--Sobic002G266000 Sobic010G196500--Sobic001G488700 Sobic010G196500--Sobic001G500800 Sobic003G086900 Sobic003G086900 Sobic010G196500--Sobic003G086900 Sobic002G193100 Sobic002G193100 Sobic010G196500--Sobic002G193100 Sobic007G084300 Sobic007G084300 Sobic010G196500--Sobic007G084300 Sobic002G386100 Sobic002G386100 Sobic010G196500--Sobic002G386100 Sobic008G146900 Sobic008G146900 Sobic010G196500--Sobic008G146900 Sobic010G196500--Sobic001G381200 Sobic010G196500--Sobic002G187700 Sobic003G229300 Sobic003G229300 Sobic001G381200--Sobic003G229300 Sobic001G381200--Sobic010G196500 Sobic003G343500 Sobic003G343500 Sobic001G381200--Sobic003G343500 Sobic001G381200--Sobic002G193100 Sobic001G381200--Sobic001G500800 Sobic001G381200--Sobic003G086900 Sobic004G169000 Sobic004G169000 Sobic001G381200--Sobic004G169000 Sobic001G476700 Sobic001G476700 Sobic001G381200--Sobic001G476700 Sobic004G118200 Sobic004G118200 Sobic001G381200--Sobic004G118200 Sobic006G213500--Sobic010G196500 Sobic006G213500--Sobic001G500800 Sobic006G213500--Sobic002G193100 Sobic007G169300 Sobic007G169300 Sobic006G213500--Sobic007G169300 Sobic006G213500--Sobic001G381200 Sobic006G213500--Sobic003G343500 Sobic002G116800 Sobic002G116800 Sobic006G213500--Sobic002G116800 Sobic006G213500--Sobic007G084300 Sobic006G213500--Sobic001G488700 Sobic007G227700 Sobic007G227700 Sobic002G001000--Sobic007G227700 Sobic002G200700 Sobic002G200700 Sobic002G001000--Sobic002G200700 Sobic004G207400 Sobic004G207400 Sobic002G001000--Sobic004G207400 Sobic010G140600 Sobic010G140600 Sobic002G001000--Sobic010G140600 Sobic001G072700 Sobic001G072700 Sobic002G001000--Sobic001G072700 Sobic010G013200 Sobic010G013200 Sobic002G001000--Sobic010G013200 Sobic008G089900 Sobic008G089900 Sobic002G001000--Sobic008G089900 Sobic002G001000--Sobic003G403500 Sobic003G224100 Sobic003G224100 Sobic002G001000--Sobic003G224100 Sobic002G187700--Sobic001G481900 Sobic004G306500 Sobic004G306500 Sobic002G187700--Sobic004G306500 Sobic002G187700--Sobic008G059100 Sobic003G198800 Sobic003G198800 Sobic002G187700--Sobic003G198800 Sobic002G187700--Sobic001G488700 Sobic003G115900 Sobic003G115900 Sobic002G187700--Sobic003G115900 Sobic006G002300 Sobic006G002300 Sobic002G187700--Sobic006G002300 Sobic003G190400 Sobic003G190400 Sobic002G187700--Sobic003G190400 Sobic002G187700--Sobic004G169000 Sobic003G403500--Sobic002G001000 Sobic003G403500--Sobic001G500800 Sobic003G375900 Sobic003G375900 Sobic003G403500--Sobic003G375900 Sobic002G367100 Sobic002G367100 Sobic003G403500--Sobic002G367100 Sobic003G002600 Sobic003G002600 Sobic003G403500--Sobic003G002600 Sobic004G201700 Sobic004G201700 Sobic003G403500--Sobic004G201700 Sobic004G131900 Sobic004G131900 Sobic003G403500--Sobic004G131900 Sobic003G403500--Sobic002G200700 Sobic004G340800 Sobic004G340800 Sobic003G403500--Sobic004G340800 Sobic003G302800--Sobic008G059100 Sobic003G302800--Sobic002G187700 Sobic003G302800--Sobic001G488700 Sobic006G135600 Sobic006G135600 Sobic003G302800--Sobic006G135600 Sobic003G302800--Sobic001G481900 Sobic003G302800--Sobic001G500800 Sobic003G302800--Sobic001G381200 Sobic007G164000 Sobic007G164000 Sobic003G302800--Sobic007G164000 Sobic003G302800--Sobic004G306500 Sobic010G262500 Sobic010G262500 Sobic006G175800--Sobic010G262500 Sobic006G175800--Sobic004G169000 Sobic002G305000 Sobic002G305000 Sobic006G175800--Sobic002G305000 Sobic006G175800--Sobic002G187700 Sobic006G175800--Sobic001G488700 Sobic006G175800--Sobic003G190400 Sobic003G043300 Sobic003G043300 Sobic006G175800--Sobic003G043300 Sobic006G175800--Sobic001G500800 Sobic006G175800--Sobic010G196500
Octagon: transcription factors


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