Gene annotation
Transcriptome id Sobic.003G302800.1
Synonym SbCIPK12, SnRK3.9, ATWL4, CBL-interacting protein kinases, WL4, Sb03g035170, CIPK12
Functional annotation Interacting factor of CBLs (PubMedID : 19860013)
CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt C4P7T3
Pfam PF14531 PF03822
Panther DB PTHR24347 PTHR24347:SF168
NCBI CDD KOG0583; Serine/threonine protein kinase
KEGG Orthology K07198; PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
Gene Ontology GO:0007165; signal transduction


Orthologs (automatic annotation)
TAIR AT4G18700 : CBL-interacting protein kinase 12
RAP-DB (Rice) LOC_Os05g43840.1 : CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a028374 , Zm00025a044217 , Zm00025a031165 , Zm00025a039983 , Zm00025a035876 , Zm00025a035878 , Zm00025a027493 , Zm00025a037946
Brachypodium KQK05416 , PNT64583 , PNT64582 , KQJ90256 , KQJ90254 , KQJ90255 , KQK09834
Barley HORVU6Hr1G054210.1 , HORVU6Hr1G054210.2 , HORVU6Hr1G054210.3 , HORVU1Hr1G076910.4 , HORVU1Hr1G076910.5 , HORVU1Hr1G076910.6 , HORVU1Hr1G076910.1 , HORVU1Hr1G076910.2 , HORVU1Hr1G076910.3 , HORVU3Hr1G073100.4 , HORVU3Hr1G073100.2 , HORVU3Hr1G073100.3 , HORVU3Hr1G073100.1 , HORVU5Hr1G065370.1 , HORVU5Hr1G065370.2
Wheat TraesCS3B02G330600 , TraesCS3D02G296000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G302800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
2 Sobic.002G187700 expressed protein -
3 Sobic.001G488700 sucrose transporter 2(PubMedID : 26465154)@sucrose transporter 2(PubMedID : 26465154)@sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
4 Sobic.006G135600 Up-regulated by silicon application under drought stress (PubMedID : 24813726)@S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed K01611: speD, S-adenosylmethionine decarboxylase
5 Sobic.001G481900 SAC domain containing protein, putative, expressed -
6 Sobic.001G500800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-coumarate--CoA ligase-like 7, putative, expressed K01904: 4-coumarate--CoA ligase
7 Sobic.001G381200 vacuolar-sorting receptor precursor, putative, expressed -
8 Sobic.007G164000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
9 Sobic.004G306500 OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
10 Sobic.003G247500 expressed protein -
11 Sobic.003G051000 expressed protein -
12 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
13 Sobic.003G190400 rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed -
14 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
15 Sobic.001G016700 ion channel DMI1-like, chloroplast precursor, putative, expressed -
16 Sobic.010G236300 "domain confirmed by Pfam database, expressed in root, expression induced BR treatment"(PubMedID : 20499123)@auxin response factor 18, putative, expressed -
17 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
18 Sobic.001G214100 expressed protein -
19 Sobic.005G024200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.37 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
20 Sobic.003G302900 transcriptional regulator family protein, putative, expressed -


Gene co-expression network
sample Sobic003G302800 Sobic003G302800 Sobic008G059100 Sobic008G059100 Sobic003G302800--Sobic008G059100 Sobic002G187700 Sobic002G187700 Sobic003G302800--Sobic002G187700 Sobic001G488700 Sobic001G488700 Sobic003G302800--Sobic001G488700 Sobic006G135600 Sobic006G135600 Sobic003G302800--Sobic006G135600 Sobic001G481900 Sobic001G481900 Sobic003G302800--Sobic001G481900 Sobic001G500800 Sobic001G500800 Sobic003G302800--Sobic001G500800 Sobic001G381200 Sobic001G381200 Sobic003G302800--Sobic001G381200 Sobic007G164000 Sobic007G164000 Sobic003G302800--Sobic007G164000 Sobic004G306500 Sobic004G306500 Sobic003G302800--Sobic004G306500 Sobic008G059100--Sobic001G488700 Sobic008G059100--Sobic002G187700 Sobic001G409300 Sobic001G409300 Sobic008G059100--Sobic001G409300 Sobic008G059100--Sobic001G481900 Sobic004G233200 Sobic004G233200 Sobic008G059100--Sobic004G233200 Sobic008G059100--Sobic003G302800 Sobic009G190700 Sobic009G190700 Sobic008G059100--Sobic009G190700 Sobic008G059100--Sobic007G164000 Sobic010G262500 Sobic010G262500 Sobic008G059100--Sobic010G262500 Sobic002G187700--Sobic001G481900 Sobic002G187700--Sobic004G306500 Sobic002G187700--Sobic008G059100 Sobic003G198800 Sobic003G198800 Sobic002G187700--Sobic003G198800 Sobic002G187700--Sobic001G488700 Sobic003G115900 Sobic003G115900 Sobic002G187700--Sobic003G115900 Sobic006G002300 Sobic006G002300 Sobic002G187700--Sobic006G002300 Sobic003G190400 Sobic003G190400 Sobic002G187700--Sobic003G190400 Sobic004G169000 Sobic004G169000 Sobic002G187700--Sobic004G169000 Sobic001G488700--Sobic008G059100 Sobic001G488700--Sobic001G500800 Sobic010G196500 Sobic010G196500 Sobic001G488700--Sobic010G196500 Sobic001G488700--Sobic002G187700 Sobic001G488700--Sobic004G233200 Sobic006G175800 Sobic006G175800 Sobic001G488700--Sobic006G175800 Sobic001G488700--Sobic003G302800 Sobic001G488700--Sobic001G481900 Sobic002G266000 Sobic002G266000 Sobic001G488700--Sobic002G266000 Sobic006G135600--Sobic003G302800 Sobic002G305000 Sobic002G305000 Sobic006G135600--Sobic002G305000 Sobic006G090500 Sobic006G090500 Sobic006G135600--Sobic006G090500 Sobic001G016700 Sobic001G016700 Sobic006G135600--Sobic001G016700 Sobic006G135600--Sobic003G115900 Sobic003G398100 Sobic003G398100 Sobic006G135600--Sobic003G398100 Sobic006G135600--Sobic004G233200 Sobic002G128200 Sobic002G128200 Sobic006G135600--Sobic002G128200 Sobic006G135600--Sobic001G488700 Sobic001G481900--Sobic002G187700 Sobic001G481900--Sobic004G306500 Sobic001G481900--Sobic003G198800 Sobic003G372500 Sobic003G372500 Sobic001G481900--Sobic003G372500 Sobic010G147100 Sobic010G147100 Sobic001G481900--Sobic010G147100 Sobic001G481900--Sobic003G115900 Sobic001G481900--Sobic008G059100 Sobic001G128300 Sobic001G128300 Sobic001G481900--Sobic001G128300 Sobic001G481900--Sobic007G164000 Sobic001G500800--Sobic001G488700 Sobic001G500800--Sobic010G196500 Sobic001G500800--Sobic001G381200 Sobic006G213500 Sobic006G213500 Sobic001G500800--Sobic006G213500 Sobic002G001000 Sobic002G001000 Sobic001G500800--Sobic002G001000 Sobic001G500800--Sobic002G187700 Sobic003G403500 Sobic003G403500 Sobic001G500800--Sobic003G403500 Sobic001G500800--Sobic003G302800 Sobic001G500800--Sobic006G175800 Sobic003G229300 Sobic003G229300 Sobic001G381200--Sobic003G229300 Sobic001G381200--Sobic010G196500 Sobic003G343500 Sobic003G343500 Sobic001G381200--Sobic003G343500 Sobic002G193100 Sobic002G193100 Sobic001G381200--Sobic002G193100 Sobic001G381200--Sobic001G500800 Sobic003G086900 Sobic003G086900 Sobic001G381200--Sobic003G086900 Sobic001G381200--Sobic004G169000 Sobic001G476700 Sobic001G476700 Sobic001G381200--Sobic001G476700 Sobic004G118200 Sobic004G118200 Sobic001G381200--Sobic004G118200 Sobic003G051000 Sobic003G051000 Sobic007G164000--Sobic003G051000 Sobic007G164000--Sobic002G187700 Sobic007G164000--Sobic001G481900 Sobic007G164000--Sobic003G190400 Sobic007G164000--Sobic001G128300 Sobic007G164000--Sobic008G059100 Sobic007G164000--Sobic003G198800 Sobic001G390200 Sobic001G390200 Sobic007G164000--Sobic001G390200 Sobic001G057700 Sobic001G057700 Sobic007G164000--Sobic001G057700 Sobic004G306500--Sobic001G481900 Sobic004G306500--Sobic002G187700 Sobic007G020600 Sobic007G020600 Sobic004G306500--Sobic007G020600 Sobic004G306500--Sobic003G086900 Sobic004G306500--Sobic010G196500 Sobic009G161550 Sobic009G161550 Sobic004G306500--Sobic009G161550 Sobic004G306500--Sobic001G128300 Sobic004G091100 Sobic004G091100 Sobic004G306500--Sobic004G091100 Sobic004G306500--Sobic004G169000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.