Gene annotation
Transcriptome id Sobic.005G024200.1,Sobic.005G024200.2,Sobic.005G024200.4,Sobic.005G024200.3
Synonym CIPK3, Sb05g002000, SbCIPK03,CBL-interacting protein kinases, SnRK3.17
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Interacting factor of CBLs (PubMedID : 19860013)
CAMK_KIN1/SNF1/Nim1_like.37 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt O24343 , C4P7T8 , O24342 , C4P7T6
Pfam PF14531 PF03822 PF03822 PF14531
Panther DB PTHR24343:SF189 PTHR24343 PTHR24343 PTHR24343:SF189
NCBI CDD KOG0583; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0007165; signal transduction


Orthologs (automatic annotation)
TAIR AT2G26980 : CBL-interacting protein kinase 3
RAP-DB (Rice) LOC_Os12g03810.2 : CAMK_KIN1/SNF1/Nim1_like.37 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a033384 , Zm00025a028958
Brachypodium KQJ89558 , KQJ89506
Barley HORVU4Hr1G026300.18 , HORVU4Hr1G026300.20 , HORVU4Hr1G026300.21 , HORVU4Hr1G026300.11 , HORVU4Hr1G026300.10 , HORVU4Hr1G026300.13 , HORVU4Hr1G026300.12 , HORVU4Hr1G026300.15 , HORVU4Hr1G026300.14 , HORVU4Hr1G026300.17 , HORVU4Hr1G026300.16 , HORVU4Hr1G026300.19 , HORVU4Hr1G026300.5 , HORVU4Hr1G026300.4 , HORVU4Hr1G026300.7 , HORVU4Hr1G026300.6 , HORVU4Hr1G026300.1 , HORVU4Hr1G026300.3 , HORVU4Hr1G026300.2 , HORVU4Hr1G026300.9 , HORVU4Hr1G026300.8
Wheat TraesCS4D02G126200 , TraesCS4D02G126200 , TraesCS4B02G131000 , TraesCS4A02G187300
Populus -


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cDNA sequences
Sobic.005G024200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G159600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
2 Sobic.003G302800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
3 Sobic.004G266400 monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
4 Sobic.006G135600 Up-regulated by silicon application under drought stress (PubMedID : 24813726)@S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed K01611: speD, S-adenosylmethionine decarboxylase
5 Sobic.004G071200 limonoid UDP-glucosyltransferase, putative, expressed -
6 Sobic.003G365000 cytochrome P450, putative, expressed -
7 Sobic.003G109100 decarboxylase, putative, expressed K01634: SGPL1, sphinganine-1-phosphate aldolase
8 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
9 Sobic.001G382000 AGC_AGC_other_RS6K_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed K04688: ribosomal protein S6 kinase beta
10 Sobic.003G398100 antigen peptide transporter-like 1, chloroplast precursor, putative, expressed -
11 Sobic.002G116800 expressed protein -
12 Sobic.003G404200 expressed protein -
13 Sobic.002G338100 THYLAKOID FORMATION1, chloroplast precursor, putative, expressed -
14 Sobic.002G311200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
15 Sobic.004G337200 dehydrogenase, putative, expressed -
16 Sobic.001G016700 ion channel DMI1-like, chloroplast precursor, putative, expressed -
17 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
18 Sobic.003G322700 expressed protein -
19 Sobic.001G050200 expressed protein -
20 Sobic.002G009700 AMP-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic005G024200 Sobic005G024200 Sobic001G159600 Sobic001G159600 Sobic005G024200--Sobic001G159600 Sobic003G302800 Sobic003G302800 Sobic005G024200--Sobic003G302800 Sobic004G266400 Sobic004G266400 Sobic005G024200--Sobic004G266400 Sobic006G135600 Sobic006G135600 Sobic005G024200--Sobic006G135600 Sobic004G071200 Sobic004G071200 Sobic005G024200--Sobic004G071200 Sobic003G365000 Sobic003G365000 Sobic005G024200--Sobic003G365000 Sobic003G109100 Sobic003G109100 Sobic005G024200--Sobic003G109100 Sobic009G034700 Sobic009G034700 Sobic005G024200--Sobic009G034700 Sobic001G382000 Sobic001G382000 Sobic005G024200--Sobic001G382000 Sobic010G250200 Sobic010G250200 Sobic001G159600--Sobic010G250200 Sobic001G481900 Sobic001G481900 Sobic001G159600--Sobic001G481900 Sobic001G159600--Sobic003G109100 Sobic001G159600--Sobic005G024200 Sobic006G090500 Sobic006G090500 Sobic001G159600--Sobic006G090500 Sobic001G159600--Sobic001G382000 Sobic003G398100 Sobic003G398100 Sobic001G159600--Sobic003G398100 Sobic006G087700 Sobic006G087700 Sobic001G159600--Sobic006G087700 Sobic001G159600--Sobic006G135600 Sobic008G059100 Sobic008G059100 Sobic003G302800--Sobic008G059100 Sobic002G187700 Sobic002G187700 Sobic003G302800--Sobic002G187700 Sobic001G488700 Sobic001G488700 Sobic003G302800--Sobic001G488700 Sobic003G302800--Sobic006G135600 Sobic003G302800--Sobic001G481900 Sobic001G500800 Sobic001G500800 Sobic003G302800--Sobic001G500800 Sobic001G381200 Sobic001G381200 Sobic003G302800--Sobic001G381200 Sobic007G164000 Sobic007G164000 Sobic003G302800--Sobic007G164000 Sobic004G306500 Sobic004G306500 Sobic003G302800--Sobic004G306500 Sobic006G043600 Sobic006G043600 Sobic004G266400--Sobic006G043600 Sobic006G204900 Sobic006G204900 Sobic004G266400--Sobic006G204900 Sobic002G159700 Sobic002G159700 Sobic004G266400--Sobic002G159700 Sobic001G016700 Sobic001G016700 Sobic004G266400--Sobic001G016700 Sobic010G224000 Sobic010G224000 Sobic004G266400--Sobic010G224000 Sobic003G322700 Sobic003G322700 Sobic004G266400--Sobic003G322700 Sobic001G462500 Sobic001G462500 Sobic004G266400--Sobic001G462500 Sobic001G121200 Sobic001G121200 Sobic004G266400--Sobic001G121200 Sobic001G207400 Sobic001G207400 Sobic004G266400--Sobic001G207400 Sobic006G135600--Sobic003G302800 Sobic002G305000 Sobic002G305000 Sobic006G135600--Sobic002G305000 Sobic006G135600--Sobic006G090500 Sobic006G135600--Sobic001G016700 Sobic003G115900 Sobic003G115900 Sobic006G135600--Sobic003G115900 Sobic006G135600--Sobic003G398100 Sobic004G233200 Sobic004G233200 Sobic006G135600--Sobic004G233200 Sobic002G128200 Sobic002G128200 Sobic006G135600--Sobic002G128200 Sobic006G135600--Sobic001G488700 Sobic004G225200 Sobic004G225200 Sobic004G071200--Sobic004G225200 Sobic006G091700 Sobic006G091700 Sobic004G071200--Sobic006G091700 Sobic004G071200--Sobic003G398100 Sobic002G420700 Sobic002G420700 Sobic004G071200--Sobic002G420700 Sobic005G178100 Sobic005G178100 Sobic004G071200--Sobic005G178100 Sobic002G266000 Sobic002G266000 Sobic004G071200--Sobic002G266000 Sobic007G035000 Sobic007G035000 Sobic004G071200--Sobic007G035000 Sobic008G153400 Sobic008G153400 Sobic004G071200--Sobic008G153400 Sobic002G085300 Sobic002G085300 Sobic004G071200--Sobic002G085300 Sobic003G365000--Sobic009G034700 Sobic004G124200 Sobic004G124200 Sobic003G365000--Sobic004G124200 Sobic003G388251 Sobic003G388251 Sobic003G365000--Sobic003G388251 Sobic003G116900 Sobic003G116900 Sobic003G365000--Sobic003G116900 Sobic010G192800 Sobic010G192800 Sobic003G365000--Sobic010G192800 Sobic003G365000--Sobic005G178100 Sobic001G130000 Sobic001G130000 Sobic003G365000--Sobic001G130000 Sobic003G404200 Sobic003G404200 Sobic003G365000--Sobic003G404200 Sobic001G320200 Sobic001G320200 Sobic003G365000--Sobic001G320200 Sobic004G052900 Sobic004G052900 Sobic003G109100--Sobic004G052900 Sobic007G024700 Sobic007G024700 Sobic003G109100--Sobic007G024700 Sobic001G270400 Sobic001G270400 Sobic003G109100--Sobic001G270400 Sobic003G100800 Sobic003G100800 Sobic003G109100--Sobic003G100800 Sobic009G094300 Sobic009G094300 Sobic003G109100--Sobic009G094300 Sobic006G245400 Sobic006G245400 Sobic003G109100--Sobic006G245400 Sobic001G137100 Sobic001G137100 Sobic003G109100--Sobic001G137100 Sobic002G340100 Sobic002G340100 Sobic003G109100--Sobic002G340100 Sobic010G205800 Sobic010G205800 Sobic003G109100--Sobic010G205800 Sobic009G034700--Sobic005G178100 Sobic009G034700--Sobic003G388251 Sobic009G034700--Sobic004G124200 Sobic001G474500 Sobic001G474500 Sobic009G034700--Sobic001G474500 Sobic001G069900 Sobic001G069900 Sobic009G034700--Sobic001G069900 Sobic006G028900 Sobic006G028900 Sobic009G034700--Sobic006G028900 Sobic008G079300 Sobic008G079300 Sobic009G034700--Sobic008G079300 Sobic001G325200 Sobic001G325200 Sobic009G034700--Sobic001G325200 Sobic001G015500 Sobic001G015500 Sobic009G034700--Sobic001G015500 Sobic001G382000--Sobic001G137100 Sobic001G382000--Sobic006G087700 Sobic009G249200 Sobic009G249200 Sobic001G382000--Sobic009G249200 Sobic001G382000--Sobic007G024700 Sobic001G382000--Sobic009G094300 Sobic001G382000--Sobic003G109100 Sobic001G382000--Sobic004G052900 Sobic001G373200 Sobic001G373200 Sobic001G382000--Sobic001G373200 Sobic008G070500 Sobic008G070500 Sobic001G382000--Sobic008G070500
Octagon: transcription factors


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