Gene annotation
Transcriptome id Sobic.006G135600.4
Synonym Sb06g021540, SAMDC06, S-adenosyl-Met decarboxylase
Functional annotation Up-regulated by silicon application under drought stress (PubMedID : 24813726)
S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed
UniProt A0A1Z5RDR4 , A0A2U9QI35 , C9DI42
Pfam PF08132 PF01536
Panther DB PTHR11570 PTHR11570:SF5
NCBI CDD KOG0788; S-adenosylmethionine decarboxylase
KEGG Orthology K01611; speD, S-adenosylmethionine decarboxylase
Gene Ontology GO:0008295; spermidine biosynthetic process GO:0006597spermine biosynthetic process GO:0004014adenosylmethionine decarboxylase activity


Orthologs (automatic annotation)
TAIR AT3G25570 : Adenosylmethionine decarboxylase family protein
RAP-DB (Rice) LOC_Os04g42095.1 : S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed
MaizeGDB (Corn) Zm00025a010804 , Zm00025a056395
Brachypodium KQJ83381 , KQK00293
Barley HORVU6Hr1G056110.4 , HORVU6Hr1G056110.1 , HORVU6Hr1G056110.3 , HORVU6Hr1G056110.2
Wheat TraesCS6B02G249000 , TraesCS2A02G355400
Populus -


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cDNA sequences
Sobic.006G135600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G302800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
2 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
3 Sobic.006G090500 chloride channel C(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K05016: chloride channel 7
4 Sobic.001G016700 ion channel DMI1-like, chloroplast precursor, putative, expressed -
5 Sobic.003G115900 lissencephaly type-1-like homology motif, putative, expressed -
6 Sobic.003G398100 antigen peptide transporter-like 1, chloroplast precursor, putative, expressed -
7 Sobic.004G233200 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
8 Sobic.002G128200 Regulator of chromosome condensation (RCC1) family protein(PubMedID : 26465154)@Regulator of chromosome condensation domain containing protein, expressed -
9 Sobic.001G488700 sucrose transporter 2(PubMedID : 26465154)@sucrose transporter 2(PubMedID : 26465154)@sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
10 Sobic.006G087700 T-complex protein 11, putative, expressed -
11 Sobic.001G305500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
13 Sobic.001G207400 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
14 Sobic.002G187700 expressed protein -
15 Sobic.003G247300 protein of unknown function DUF1296 domain containing protein, expressed -
16 Sobic.003G247500 expressed protein -
17 Sobic.003G317500 acyltransferase, putative, expressed K13513: LCLAT1, lysocardiolipin and lysophospholipid acyltransferase
18 Sobic.001G481900 SAC domain containing protein, putative, expressed -
19 Sobic.003G392900 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
20 Sobic.001G073500 5-nucleotidase domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G135600 Sobic006G135600 Sobic003G302800 Sobic003G302800 Sobic006G135600--Sobic003G302800 Sobic002G305000 Sobic002G305000 Sobic006G135600--Sobic002G305000 Sobic006G090500 Sobic006G090500 Sobic006G135600--Sobic006G090500 Sobic001G016700 Sobic001G016700 Sobic006G135600--Sobic001G016700 Sobic003G115900 Sobic003G115900 Sobic006G135600--Sobic003G115900 Sobic003G398100 Sobic003G398100 Sobic006G135600--Sobic003G398100 Sobic004G233200 Sobic004G233200 Sobic006G135600--Sobic004G233200 Sobic002G128200 Sobic002G128200 Sobic006G135600--Sobic002G128200 Sobic001G488700 Sobic001G488700 Sobic006G135600--Sobic001G488700 Sobic008G059100 Sobic008G059100 Sobic003G302800--Sobic008G059100 Sobic002G187700 Sobic002G187700 Sobic003G302800--Sobic002G187700 Sobic003G302800--Sobic001G488700 Sobic003G302800--Sobic006G135600 Sobic001G481900 Sobic001G481900 Sobic003G302800--Sobic001G481900 Sobic001G500800 Sobic001G500800 Sobic003G302800--Sobic001G500800 Sobic001G381200 Sobic001G381200 Sobic003G302800--Sobic001G381200 Sobic007G164000 Sobic007G164000 Sobic003G302800--Sobic007G164000 Sobic004G306500 Sobic004G306500 Sobic003G302800--Sobic004G306500 Sobic002G359400 Sobic002G359400 Sobic002G305000--Sobic002G359400 Sobic009G201300 Sobic009G201300 Sobic002G305000--Sobic009G201300 Sobic003G354600 Sobic003G354600 Sobic002G305000--Sobic003G354600 Sobic010G147100 Sobic010G147100 Sobic002G305000--Sobic010G147100 Sobic001G355800 Sobic001G355800 Sobic002G305000--Sobic001G355800 Sobic006G175800 Sobic006G175800 Sobic002G305000--Sobic006G175800 Sobic001G303100 Sobic001G303100 Sobic002G305000--Sobic001G303100 Sobic010G074300 Sobic010G074300 Sobic002G305000--Sobic010G074300 Sobic003G220800 Sobic003G220800 Sobic002G305000--Sobic003G220800 Sobic002G130800 Sobic002G130800 Sobic006G090500--Sobic002G130800 Sobic001G350700 Sobic001G350700 Sobic006G090500--Sobic001G350700 Sobic006G090500--Sobic006G135600 Sobic006G090500--Sobic001G481900 Sobic008G093000 Sobic008G093000 Sobic006G090500--Sobic008G093000 Sobic004G005200 Sobic004G005200 Sobic006G090500--Sobic004G005200 Sobic001G070000 Sobic001G070000 Sobic006G090500--Sobic001G070000 Sobic006G090500--Sobic004G233200 Sobic001G159600 Sobic001G159600 Sobic006G090500--Sobic001G159600 Sobic002G430000 Sobic002G430000 Sobic001G016700--Sobic002G430000 Sobic002G111000 Sobic002G111000 Sobic001G016700--Sobic002G111000 Sobic001G207400 Sobic001G207400 Sobic001G016700--Sobic001G207400 Sobic010G139600 Sobic010G139600 Sobic001G016700--Sobic010G139600 Sobic003G110000 Sobic003G110000 Sobic001G016700--Sobic003G110000 Sobic001G390800 Sobic001G390800 Sobic001G016700--Sobic001G390800 Sobic006G204900 Sobic006G204900 Sobic001G016700--Sobic006G204900 Sobic003G322700 Sobic003G322700 Sobic001G016700--Sobic003G322700 Sobic003G086900 Sobic003G086900 Sobic001G016700--Sobic003G086900 Sobic003G115900--Sobic002G187700 Sobic003G198800 Sobic003G198800 Sobic003G115900--Sobic003G198800 Sobic001G381600 Sobic001G381600 Sobic003G115900--Sobic001G381600 Sobic006G002300 Sobic006G002300 Sobic003G115900--Sobic006G002300 Sobic004G091100 Sobic004G091100 Sobic003G115900--Sobic004G091100 Sobic009G074400 Sobic009G074400 Sobic003G115900--Sobic009G074400 Sobic003G115900--Sobic001G481900 Sobic001G107600 Sobic001G107600 Sobic003G115900--Sobic001G107600 Sobic003G115900--Sobic010G139600 Sobic006G199000 Sobic006G199000 Sobic003G398100--Sobic006G199000 Sobic008G153400 Sobic008G153400 Sobic003G398100--Sobic008G153400 Sobic009G207600 Sobic009G207600 Sobic003G398100--Sobic009G207600 Sobic001G504900 Sobic001G504900 Sobic003G398100--Sobic001G504900 Sobic003G257100 Sobic003G257100 Sobic003G398100--Sobic003G257100 Sobic001G496100 Sobic001G496100 Sobic003G398100--Sobic001G496100 Sobic003G355600 Sobic003G355600 Sobic003G398100--Sobic003G355600 Sobic003G398100--Sobic003G322700 Sobic001G150600 Sobic001G150600 Sobic003G398100--Sobic001G150600 Sobic004G233200--Sobic001G488700 Sobic004G233200--Sobic010G147100 Sobic004G233200--Sobic002G130800 Sobic004G233200--Sobic008G059100 Sobic004G233200--Sobic001G390800 Sobic004G233200--Sobic002G187700 Sobic004G233200--Sobic002G305000 Sobic001G268200 Sobic001G268200 Sobic004G233200--Sobic001G268200 Sobic004G233200--Sobic004G306500 Sobic005G149700 Sobic005G149700 Sobic002G128200--Sobic005G149700 Sobic006G104600 Sobic006G104600 Sobic002G128200--Sobic006G104600 Sobic002G128200--Sobic006G002300 Sobic006G087700 Sobic006G087700 Sobic002G128200--Sobic006G087700 Sobic004G179300 Sobic004G179300 Sobic002G128200--Sobic004G179300 Sobic003G301900 Sobic003G301900 Sobic002G128200--Sobic003G301900 Sobic009G011600 Sobic009G011600 Sobic002G128200--Sobic009G011600 Sobic001G517800 Sobic001G517800 Sobic002G128200--Sobic001G517800 Sobic001G375100 Sobic001G375100 Sobic002G128200--Sobic001G375100 Sobic001G488700--Sobic008G059100 Sobic001G488700--Sobic001G500800 Sobic010G196500 Sobic010G196500 Sobic001G488700--Sobic010G196500 Sobic001G488700--Sobic002G187700 Sobic001G488700--Sobic004G233200 Sobic001G488700--Sobic006G175800 Sobic001G488700--Sobic003G302800 Sobic001G488700--Sobic001G481900 Sobic002G266000 Sobic002G266000 Sobic001G488700--Sobic002G266000
Octagon: transcription factors


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