Gene annotation
Transcriptome id Sobic.006G090500.2
Synonym CLC-C, ATCLC-C, Sb06g017570,
Functional annotation chloride channel C (PubMedID : 26465154)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5Y8V8
Pfam PF00571 PF00654
Panther DB PTHR11689 PTHR11689:SF88
NCBI CDD -
KEGG Orthology K05016; chloride channel 7
Gene Ontology GO:0016020; membrane GO:0006821chloride transport GO:0005247voltage-gated chloride channel activity


Orthologs (automatic annotation)
TAIR AT5G49890 : chloride channel C
RAP-DB (Rice) ChrSy.fgenesh.mRNA.37 : expressed protein
MaizeGDB (Corn) Zm00025a020717 , Zm00025a009563
Brachypodium KQJ82843 , KQJ99905 , KQJ99904 , KQJ82844 , KQJ82845
Barley HORVU2Hr1G077080.6 , HORVU2Hr1G077080.7 , HORVU2Hr1G077080.4 , HORVU2Hr1G077080.5 , HORVU2Hr1G077080.2 , HORVU2Hr1G077080.3 , HORVU2Hr1G077080.1 , HORVU2Hr1G077080.8 , HORVU2Hr1G077080.9 , HORVU2Hr1G077080.10 , HORVU2Hr1G077080.11
Wheat TraesCS2A02G309900 , TraesCS2A02G517500 , TraesCS2D02G519000 , TraesCS3D02G126700 , TraesCS3B02G144700 , TraesCS2A02G517500 , TraesCS2B02G326900 , TraesCS2B02G546000 , TraesCS2D02G308100 , TraesCS3D02G126600 , TraesCS2B02G546000 , TraesCS3A02G125300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G130800 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
2 Sobic.001G350700 Positive regulator of ABA(PubMedID : 30367619)@CAMK_CAMK_like.19 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
3 Sobic.006G135600 Up-regulated by silicon application under drought stress (PubMedID : 24813726)@S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed K01611: speD, S-adenosylmethionine decarboxylase
4 Sobic.001G481900 SAC domain containing protein, putative, expressed -
5 Sobic.008G093000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
6 Sobic.004G005200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transmembrane protein 120A, putative, expressed -
7 Sobic.001G070000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
8 Sobic.004G233200 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
9 Sobic.001G159600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
10 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
11 Sobic.003G352600 ZOS1-16 - C2H2 zinc finger protein, expressed -
12 Sobic.003G228100 cytochrome P450 72A1, putative, expressed -
13 Sobic.001G305500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.003G139800 protein kinase, putative, expressed K13436: pto-interacting protein 1
15 Sobic.002G424000 transcription factor, putative, expressed K14431: transcription factor TGA
16 Sobic.001G203900 OsGrx_S17 - glutaredoxin subgroup II, expressed -
17 Sobic.001G107600 - K18328: lariat debranching enzyme
18 Sobic.001G214100 expressed protein -
19 Sobic.010G228400 zinc finger, C3HC4 type, domain containing protein, expressed -
20 Sobic.003G365300 sorting nexin 1, putative, expressed K17917: sorting nexin-1/2


Gene co-expression network
sample Sobic006G090500 Sobic006G090500 Sobic002G130800 Sobic002G130800 Sobic006G090500--Sobic002G130800 Sobic001G350700 Sobic001G350700 Sobic006G090500--Sobic001G350700 Sobic006G135600 Sobic006G135600 Sobic006G090500--Sobic006G135600 Sobic001G481900 Sobic001G481900 Sobic006G090500--Sobic001G481900 Sobic008G093000 Sobic008G093000 Sobic006G090500--Sobic008G093000 Sobic004G005200 Sobic004G005200 Sobic006G090500--Sobic004G005200 Sobic001G070000 Sobic001G070000 Sobic006G090500--Sobic001G070000 Sobic004G233200 Sobic004G233200 Sobic006G090500--Sobic004G233200 Sobic001G159600 Sobic001G159600 Sobic006G090500--Sobic001G159600 Sobic006G092400 Sobic006G092400 Sobic002G130800--Sobic006G092400 Sobic001G137100 Sobic001G137100 Sobic002G130800--Sobic001G137100 Sobic004G118200 Sobic004G118200 Sobic002G130800--Sobic004G118200 Sobic010G147100 Sobic010G147100 Sobic002G130800--Sobic010G147100 Sobic002G130800--Sobic006G090500 Sobic010G228400 Sobic010G228400 Sobic002G130800--Sobic010G228400 Sobic002G130800--Sobic004G233200 Sobic009G217100 Sobic009G217100 Sobic002G130800--Sobic009G217100 Sobic002G130800--Sobic001G481900 Sobic001G003000 Sobic001G003000 Sobic001G350700--Sobic001G003000 Sobic001G217400 Sobic001G217400 Sobic001G350700--Sobic001G217400 Sobic001G350700--Sobic006G090500 Sobic006G271200 Sobic006G271200 Sobic001G350700--Sobic006G271200 Sobic006G214200 Sobic006G214200 Sobic001G350700--Sobic006G214200 Sobic001G305500 Sobic001G305500 Sobic001G350700--Sobic001G305500 Sobic001G440600 Sobic001G440600 Sobic001G350700--Sobic001G440600 Sobic003G228100 Sobic003G228100 Sobic001G350700--Sobic003G228100 Sobic004G341200 Sobic004G341200 Sobic001G350700--Sobic004G341200 Sobic003G302800 Sobic003G302800 Sobic006G135600--Sobic003G302800 Sobic002G305000 Sobic002G305000 Sobic006G135600--Sobic002G305000 Sobic006G135600--Sobic006G090500 Sobic001G016700 Sobic001G016700 Sobic006G135600--Sobic001G016700 Sobic003G115900 Sobic003G115900 Sobic006G135600--Sobic003G115900 Sobic003G398100 Sobic003G398100 Sobic006G135600--Sobic003G398100 Sobic006G135600--Sobic004G233200 Sobic002G128200 Sobic002G128200 Sobic006G135600--Sobic002G128200 Sobic001G488700 Sobic001G488700 Sobic006G135600--Sobic001G488700 Sobic002G187700 Sobic002G187700 Sobic001G481900--Sobic002G187700 Sobic004G306500 Sobic004G306500 Sobic001G481900--Sobic004G306500 Sobic003G198800 Sobic003G198800 Sobic001G481900--Sobic003G198800 Sobic003G372500 Sobic003G372500 Sobic001G481900--Sobic003G372500 Sobic001G481900--Sobic010G147100 Sobic001G481900--Sobic003G115900 Sobic008G059100 Sobic008G059100 Sobic001G481900--Sobic008G059100 Sobic001G128300 Sobic001G128300 Sobic001G481900--Sobic001G128300 Sobic007G164000 Sobic007G164000 Sobic001G481900--Sobic007G164000 Sobic001G199100 Sobic001G199100 Sobic008G093000--Sobic001G199100 Sobic010G064600 Sobic010G064600 Sobic008G093000--Sobic010G064600 Sobic001G301700 Sobic001G301700 Sobic008G093000--Sobic001G301700 Sobic003G312200 Sobic003G312200 Sobic008G093000--Sobic003G312200 Sobic004G275700 Sobic004G275700 Sobic008G093000--Sobic004G275700 Sobic010G229400 Sobic010G229400 Sobic008G093000--Sobic010G229400 Sobic009G207000 Sobic009G207000 Sobic008G093000--Sobic009G207000 Sobic003G087000 Sobic003G087000 Sobic008G093000--Sobic003G087000 Sobic002G244100 Sobic002G244100 Sobic008G093000--Sobic002G244100 Sobic001G313500 Sobic001G313500 Sobic004G005200--Sobic001G313500 Sobic010G210500 Sobic010G210500 Sobic004G005200--Sobic010G210500 Sobic004G005200--Sobic006G090500 Sobic010G261600 Sobic010G261600 Sobic004G005200--Sobic010G261600 Sobic004G005200--Sobic003G228100 Sobic002G303600 Sobic002G303600 Sobic004G005200--Sobic002G303600 Sobic004G228800 Sobic004G228800 Sobic004G005200--Sobic004G228800 Sobic004G005200--Sobic001G003000 Sobic004G005200--Sobic001G350700 Sobic001G406100 Sobic001G406100 Sobic001G070000--Sobic001G406100 Sobic010G116400 Sobic010G116400 Sobic001G070000--Sobic010G116400 Sobic008G047400 Sobic008G047400 Sobic001G070000--Sobic008G047400 Sobic001G070000--Sobic006G090500 Sobic003G243600 Sobic003G243600 Sobic001G070000--Sobic003G243600 Sobic001G070000--Sobic008G059100 Sobic003G403700 Sobic003G403700 Sobic001G070000--Sobic003G403700 Sobic001G185500 Sobic001G185500 Sobic001G070000--Sobic001G185500 Sobic001G476700 Sobic001G476700 Sobic001G070000--Sobic001G476700 Sobic004G233200--Sobic001G488700 Sobic004G233200--Sobic010G147100 Sobic004G233200--Sobic002G130800 Sobic004G233200--Sobic008G059100 Sobic001G390800 Sobic001G390800 Sobic004G233200--Sobic001G390800 Sobic004G233200--Sobic002G187700 Sobic004G233200--Sobic002G305000 Sobic001G268200 Sobic001G268200 Sobic004G233200--Sobic001G268200 Sobic004G233200--Sobic004G306500 Sobic010G250200 Sobic010G250200 Sobic001G159600--Sobic010G250200 Sobic001G159600--Sobic001G481900 Sobic003G109100 Sobic003G109100 Sobic001G159600--Sobic003G109100 Sobic005G024200 Sobic005G024200 Sobic001G159600--Sobic005G024200 Sobic001G159600--Sobic006G090500 Sobic001G382000 Sobic001G382000 Sobic001G159600--Sobic001G382000 Sobic001G159600--Sobic003G398100 Sobic006G087700 Sobic006G087700 Sobic001G159600--Sobic006G087700 Sobic001G159600--Sobic006G135600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.