Gene annotation
Transcriptome id Sobic.004G005200.2,Sobic.004G005200.1
Synonym Sb04g000650
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
transmembrane protein 120A, putative, expressed
UniProt A0A1Z5RK90 , C5XRK6
Pfam PF07851
Panther DB PTHR21433 PTHR21433:SF4
NCBI CDD KOG4758; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G33230 : TMPIT-like protein
RAP-DB (Rice) LOC_Os02g01720.1 : transmembrane protein 120A, putative, expressed
MaizeGDB (Corn) Zm00025a018650 , Zm00025a018653
Brachypodium PNT65693 , PNT65694 , KQJ92832
Barley HORVU6Hr1G004260.1 , HORVU6Hr1G004260.2 , HORVU6Hr1G004260.3 , HORVU6Hr1G004260.4 , HORVU6Hr1G004260.5 , HORVU6Hr1G004260.6
Wheat TraesCS6D02G028000 , TraesCS6A02G024600
Populus -


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cDNA sequences
Sobic.004G005200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G313500 tobamovirus multiplication protein, putative, expressed -
2 Sobic.010G210500 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
3 Sobic.006G090500 chloride channel C(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K05016: chloride channel 7
4 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
5 Sobic.003G228100 cytochrome P450 72A1, putative, expressed -
6 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
7 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
8 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
9 Sobic.001G350700 Positive regulator of ABA(PubMedID : 30367619)@CAMK_CAMK_like.19 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
10 Sobic.010G278200 expressed protein -
11 Sobic.006G126500 OsFBX146 - F-box domain containing protein, expressed -
12 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
13 Sobic.009G207000 protein of unknown function DUF502 domain containing protein, expressed -
14 Sobic.008G093000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
15 Sobic.009G068500 expressed protein -
16 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.001G070000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
18 Sobic.007G056100 expressed protein K15077: elongin-A
19 Sobic.004G003401 - -
20 Sobic.010G131900 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin


Gene co-expression network
sample Sobic004G005200 Sobic004G005200 Sobic001G313500 Sobic001G313500 Sobic004G005200--Sobic001G313500 Sobic010G210500 Sobic010G210500 Sobic004G005200--Sobic010G210500 Sobic006G090500 Sobic006G090500 Sobic004G005200--Sobic006G090500 Sobic010G261600 Sobic010G261600 Sobic004G005200--Sobic010G261600 Sobic003G228100 Sobic003G228100 Sobic004G005200--Sobic003G228100 Sobic002G303600 Sobic002G303600 Sobic004G005200--Sobic002G303600 Sobic004G228800 Sobic004G228800 Sobic004G005200--Sobic004G228800 Sobic001G003000 Sobic001G003000 Sobic004G005200--Sobic001G003000 Sobic001G350700 Sobic001G350700 Sobic004G005200--Sobic001G350700 Sobic001G421400 Sobic001G421400 Sobic001G313500--Sobic001G421400 Sobic001G512400 Sobic001G512400 Sobic001G313500--Sobic001G512400 Sobic001G085900 Sobic001G085900 Sobic001G313500--Sobic001G085900 Sobic002G385900 Sobic002G385900 Sobic001G313500--Sobic002G385900 Sobic001G161900 Sobic001G161900 Sobic001G313500--Sobic001G161900 Sobic010G129600 Sobic010G129600 Sobic001G313500--Sobic010G129600 Sobic009G135600 Sobic009G135600 Sobic001G313500--Sobic009G135600 Sobic001G313500--Sobic010G261600 Sobic004G039300 Sobic004G039300 Sobic001G313500--Sobic004G039300 Sobic002G325300 Sobic002G325300 Sobic010G210500--Sobic002G325300 Sobic010G147100 Sobic010G147100 Sobic010G210500--Sobic010G147100 Sobic003G264100 Sobic003G264100 Sobic010G210500--Sobic003G264100 Sobic009G255700 Sobic009G255700 Sobic010G210500--Sobic009G255700 Sobic003G354600 Sobic003G354600 Sobic010G210500--Sobic003G354600 Sobic003G119600 Sobic003G119600 Sobic010G210500--Sobic003G119600 Sobic007G201500 Sobic007G201500 Sobic010G210500--Sobic007G201500 Sobic007G172200 Sobic007G172200 Sobic010G210500--Sobic007G172200 Sobic001G207000 Sobic001G207000 Sobic010G210500--Sobic001G207000 Sobic002G130800 Sobic002G130800 Sobic006G090500--Sobic002G130800 Sobic006G090500--Sobic001G350700 Sobic006G135600 Sobic006G135600 Sobic006G090500--Sobic006G135600 Sobic001G481900 Sobic001G481900 Sobic006G090500--Sobic001G481900 Sobic008G093000 Sobic008G093000 Sobic006G090500--Sobic008G093000 Sobic006G090500--Sobic004G005200 Sobic001G070000 Sobic001G070000 Sobic006G090500--Sobic001G070000 Sobic004G233200 Sobic004G233200 Sobic006G090500--Sobic004G233200 Sobic001G159600 Sobic001G159600 Sobic006G090500--Sobic001G159600 Sobic003G338500 Sobic003G338500 Sobic010G261600--Sobic003G338500 Sobic010G261600--Sobic002G303600 Sobic002G008800 Sobic002G008800 Sobic010G261600--Sobic002G008800 Sobic010G261600--Sobic004G228800 Sobic004G323700 Sobic004G323700 Sobic010G261600--Sobic004G323700 Sobic002G262900 Sobic002G262900 Sobic010G261600--Sobic002G262900 Sobic009G228700 Sobic009G228700 Sobic010G261600--Sobic009G228700 Sobic004G275700 Sobic004G275700 Sobic010G261600--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic010G261600--Sobic010G020400 Sobic001G185500 Sobic001G185500 Sobic003G228100--Sobic001G185500 Sobic001G089800 Sobic001G089800 Sobic003G228100--Sobic001G089800 Sobic003G228100--Sobic001G003000 Sobic003G228100--Sobic001G350700 Sobic004G042300 Sobic004G042300 Sobic003G228100--Sobic004G042300 Sobic003G228100--Sobic008G093000 Sobic003G098000 Sobic003G098000 Sobic003G228100--Sobic003G098000 Sobic003G228100--Sobic004G005200 Sobic003G352600 Sobic003G352600 Sobic003G228100--Sobic003G352600 Sobic002G303600--Sobic010G261600 Sobic002G303600--Sobic004G323700 Sobic004G178200 Sobic004G178200 Sobic002G303600--Sobic004G178200 Sobic006G180000 Sobic006G180000 Sobic002G303600--Sobic006G180000 Sobic007G218000 Sobic007G218000 Sobic002G303600--Sobic007G218000 Sobic004G028100 Sobic004G028100 Sobic002G303600--Sobic004G028100 Sobic003G422900 Sobic003G422900 Sobic002G303600--Sobic003G422900 Sobic009G092400 Sobic009G092400 Sobic002G303600--Sobic009G092400 Sobic004G003401 Sobic004G003401 Sobic002G303600--Sobic004G003401 Sobic004G261600 Sobic004G261600 Sobic004G228800--Sobic004G261600 Sobic004G228800--Sobic010G261600 Sobic004G228800--Sobic004G323700 Sobic010G278200 Sobic010G278200 Sobic004G228800--Sobic010G278200 Sobic004G236200 Sobic004G236200 Sobic004G228800--Sobic004G236200 Sobic006G131000 Sobic006G131000 Sobic004G228800--Sobic006G131000 Sobic005G177700 Sobic005G177700 Sobic004G228800--Sobic005G177700 Sobic007G056600 Sobic007G056600 Sobic004G228800--Sobic007G056600 Sobic003G126300 Sobic003G126300 Sobic004G228800--Sobic003G126300 Sobic006G271200 Sobic006G271200 Sobic001G003000--Sobic006G271200 Sobic001G003000--Sobic001G089800 Sobic009G126900 Sobic009G126900 Sobic001G003000--Sobic009G126900 Sobic004G102400 Sobic004G102400 Sobic001G003000--Sobic004G102400 Sobic006G237900 Sobic006G237900 Sobic001G003000--Sobic006G237900 Sobic003G005600 Sobic003G005600 Sobic001G003000--Sobic003G005600 Sobic010G043400 Sobic010G043400 Sobic001G003000--Sobic010G043400 Sobic009G193700 Sobic009G193700 Sobic001G003000--Sobic009G193700 Sobic001G003000--Sobic001G350700 Sobic001G350700--Sobic001G003000 Sobic001G217400 Sobic001G217400 Sobic001G350700--Sobic001G217400 Sobic001G350700--Sobic006G090500 Sobic001G350700--Sobic006G271200 Sobic006G214200 Sobic006G214200 Sobic001G350700--Sobic006G214200 Sobic001G305500 Sobic001G305500 Sobic001G350700--Sobic001G305500 Sobic001G440600 Sobic001G440600 Sobic001G350700--Sobic001G440600 Sobic001G350700--Sobic003G228100 Sobic004G341200 Sobic004G341200 Sobic001G350700--Sobic004G341200
Octagon: transcription factors


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