Gene annotation
Transcriptome id Sobic.006G126500.1
Synonym Sb06g020660
Functional annotation OsFBX146 - F-box domain containing protein, expressed
UniProt C5YAX1
Pfam PF00646
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G26000 : Ribonuclease inhibitor
RAP-DB (Rice) LOC_Os04g40910.1 : OsFBX146 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056332 , Zm00025a010950
Brachypodium KQJ83240
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G126500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G172200 inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase, putative, expressed K18081: myotubularin-related protein 1/2
2 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
3 Sobic.007G075400 expressed protein -
4 Sobic.010G072400 SAC domain containing protein, putative, expressed -
5 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
6 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
7 Sobic.007G088100 phosphatidylinositol 3-kinase, root isoform, putative, expressed K00914: PIK3C3, phosphatidylinositol 3-kinase
8 Sobic.004G269200 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
9 Sobic.001G375600 transmembrane protein, putative, expressed -
10 Sobic.003G089000 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
11 Sobic.001G436900 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
12 Sobic.003G320700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
14 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
15 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
16 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
17 Sobic.006G087700 T-complex protein 11, putative, expressed -
18 Sobic.004G351300 protein binding protein, putative, expressed -
19 Sobic.007G133700 expressed protein -
20 Sobic.001G207400 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1


Gene co-expression network
sample Sobic006G126500 Sobic006G126500 Sobic007G172200 Sobic007G172200 Sobic006G126500--Sobic007G172200 Sobic006G204900 Sobic006G204900 Sobic006G126500--Sobic006G204900 Sobic007G075400 Sobic007G075400 Sobic006G126500--Sobic007G075400 Sobic010G072400 Sobic010G072400 Sobic006G126500--Sobic010G072400 Sobic001G370900 Sobic001G370900 Sobic006G126500--Sobic001G370900 Sobic004G331100 Sobic004G331100 Sobic006G126500--Sobic004G331100 Sobic007G088100 Sobic007G088100 Sobic006G126500--Sobic007G088100 Sobic004G269200 Sobic004G269200 Sobic006G126500--Sobic004G269200 Sobic001G375600 Sobic001G375600 Sobic006G126500--Sobic001G375600 Sobic001G273700 Sobic001G273700 Sobic007G172200--Sobic001G273700 Sobic007G172200--Sobic001G370900 Sobic007G133700 Sobic007G133700 Sobic007G172200--Sobic007G133700 Sobic003G118200 Sobic003G118200 Sobic007G172200--Sobic003G118200 Sobic009G256400 Sobic009G256400 Sobic007G172200--Sobic009G256400 Sobic003G422500 Sobic003G422500 Sobic007G172200--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic007G172200--Sobic005G001000 Sobic009G165700 Sobic009G165700 Sobic007G172200--Sobic009G165700 Sobic008G132600 Sobic008G132600 Sobic007G172200--Sobic008G132600 Sobic003G322700 Sobic003G322700 Sobic006G204900--Sobic003G322700 Sobic001G207400 Sobic001G207400 Sobic006G204900--Sobic001G207400 Sobic006G204900--Sobic004G269200 Sobic009G133500 Sobic009G133500 Sobic006G204900--Sobic009G133500 Sobic010G001500 Sobic010G001500 Sobic006G204900--Sobic010G001500 Sobic004G068400 Sobic004G068400 Sobic006G204900--Sobic004G068400 Sobic004G355000 Sobic004G355000 Sobic006G204900--Sobic004G355000 Sobic003G320700 Sobic003G320700 Sobic006G204900--Sobic003G320700 Sobic002G430000 Sobic002G430000 Sobic006G204900--Sobic002G430000 Sobic010G139600 Sobic010G139600 Sobic007G075400--Sobic010G139600 Sobic009G053900 Sobic009G053900 Sobic007G075400--Sobic009G053900 Sobic007G075400--Sobic004G331100 Sobic002G008900 Sobic002G008900 Sobic007G075400--Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic007G075400--Sobic009G191000 Sobic002G146300 Sobic002G146300 Sobic007G075400--Sobic002G146300 Sobic007G075400--Sobic003G422500 Sobic003G313500 Sobic003G313500 Sobic007G075400--Sobic003G313500 Sobic004G065000 Sobic004G065000 Sobic007G075400--Sobic004G065000 Sobic010G072400--Sobic007G172200 Sobic001G217400 Sobic001G217400 Sobic010G072400--Sobic001G217400 Sobic001G043100 Sobic001G043100 Sobic010G072400--Sobic001G043100 Sobic010G072400--Sobic007G133700 Sobic010G072400--Sobic001G370900 Sobic002G042600 Sobic002G042600 Sobic010G072400--Sobic002G042600 Sobic010G072400--Sobic006G126500 Sobic006G077300 Sobic006G077300 Sobic010G072400--Sobic006G077300 Sobic003G198800 Sobic003G198800 Sobic010G072400--Sobic003G198800 Sobic008G098900 Sobic008G098900 Sobic001G370900--Sobic008G098900 Sobic001G370900--Sobic005G001000 Sobic001G370900--Sobic009G256400 Sobic001G370900--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic001G370900--Sobic003G205200 Sobic001G194200 Sobic001G194200 Sobic001G370900--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic001G370900--Sobic004G276400 Sobic008G001200 Sobic008G001200 Sobic001G370900--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic001G370900--Sobic001G457800 Sobic004G331100--Sobic007G075400 Sobic009G027300 Sobic009G027300 Sobic004G331100--Sobic009G027300 Sobic002G419800 Sobic002G419800 Sobic004G331100--Sobic002G419800 Sobic003G101400 Sobic003G101400 Sobic004G331100--Sobic003G101400 Sobic001G290100 Sobic001G290100 Sobic004G331100--Sobic001G290100 Sobic001G050200 Sobic001G050200 Sobic004G331100--Sobic001G050200 Sobic004G347400 Sobic004G347400 Sobic004G331100--Sobic004G347400 Sobic004G331100--Sobic003G118200 Sobic004G331100--Sobic004G065000 Sobic007G088100--Sobic001G273700 Sobic007G088100--Sobic001G375600 Sobic007G088100--Sobic007G172200 Sobic003G259100 Sobic003G259100 Sobic007G088100--Sobic003G259100 Sobic007G088100--Sobic004G065000 Sobic006G037700 Sobic006G037700 Sobic007G088100--Sobic006G037700 Sobic007G088100--Sobic006G126500 Sobic010G072800 Sobic010G072800 Sobic007G088100--Sobic010G072800 Sobic007G088100--Sobic006G204900 Sobic004G269200--Sobic009G027300 Sobic004G269200--Sobic001G050200 Sobic001G281100 Sobic001G281100 Sobic004G269200--Sobic001G281100 Sobic004G329400 Sobic004G329400 Sobic004G269200--Sobic004G329400 Sobic004G269200--Sobic004G331100 Sobic004G269200--Sobic003G101400 Sobic004G004300 Sobic004G004300 Sobic004G269200--Sobic004G004300 Sobic005G157000 Sobic005G157000 Sobic004G269200--Sobic005G157000 Sobic001G534800 Sobic001G534800 Sobic004G269200--Sobic001G534800 Sobic001G007100 Sobic001G007100 Sobic001G375600--Sobic001G007100 Sobic001G375600--Sobic010G072800 Sobic009G165400 Sobic009G165400 Sobic001G375600--Sobic009G165400 Sobic001G375600--Sobic001G273700 Sobic001G375600--Sobic007G088100 Sobic003G089000 Sobic003G089000 Sobic001G375600--Sobic003G089000 Sobic001G375600--Sobic004G269200 Sobic001G375600--Sobic003G259100 Sobic001G375600--Sobic006G204900
Octagon: transcription factors


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