Gene annotation
Transcriptome id Sobic.010G072400.1
Synonym Sb10g006340
Functional annotation SAC domain containing protein, putative, expressed
UniProt C5Z5Z0
Pfam PF02383
Panther DB PTHR11200 PTHR11200:SF131
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G14205 : Phosphoinositide phosphatase family protein
RAP-DB (Rice) LOC_Os06g09540.1 : SAC domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a042435 , Zm00025a049686 , Zm00025a022377 , Zm00025a050860
Brachypodium KQK19159
Barley HORVU7Hr1G033260.2 , HORVU7Hr1G033260.1 , HORVU7Hr1G033260.7 , HORVU7Hr1G033260.6 , HORVU7Hr1G033260.5 , HORVU7Hr1G033260.4 , HORVU7Hr1G033260.3 , HORVU7Hr1G033260.9 , HORVU7Hr1G033260.8 , HORVU6Hr1G082670.5 , HORVU6Hr1G082670.4 , HORVU6Hr1G082670.6 , HORVU6Hr1G082670.1 , HORVU6Hr1G082670.3 , HORVU6Hr1G082670.2
Wheat TraesCS7D02G159900 , TraesCS7D02G159900 , TraesCS7D02G159900 , TraesCS7D02G159900 , TraesCS7A02G159000 , TraesCS7A02G159000 , TraesCS7A02G159000 , TraesCS7A02G159000 , TraesCS7A02G159000 , TraesCS7B02G063500 , TraesCS7B02G063500 , TraesCS7B02G063500 , TraesCS7B02G063500 , TraesCS7B02G063500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G072400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G172200 inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase, putative, expressed K18081: myotubularin-related protein 1/2
2 Sobic.001G217400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
3 Sobic.001G043100 EMB1745, putative, expressed K18723: nucleoporin GLE1
4 Sobic.007G133700 expressed protein -
5 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
6 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
7 Sobic.006G126500 OsFBX146 - F-box domain containing protein, expressed -
8 Sobic.006G077300 expressed protein K17637: EXOC2, exocyst complex component 2
9 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
10 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
11 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
12 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
13 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
14 Sobic.008G132600 expressed protein -
15 Sobic.007G075400 expressed protein -
16 Sobic.002G370200 agenet domain-containing protein, putative, expressed -
17 Sobic.002G147600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
18 Sobic.003G101400 transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
19 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
20 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12


Gene co-expression network
sample Sobic010G072400 Sobic010G072400 Sobic007G172200 Sobic007G172200 Sobic010G072400--Sobic007G172200 Sobic001G217400 Sobic001G217400 Sobic010G072400--Sobic001G217400 Sobic001G043100 Sobic001G043100 Sobic010G072400--Sobic001G043100 Sobic007G133700 Sobic007G133700 Sobic010G072400--Sobic007G133700 Sobic001G370900 Sobic001G370900 Sobic010G072400--Sobic001G370900 Sobic002G042600 Sobic002G042600 Sobic010G072400--Sobic002G042600 Sobic006G126500 Sobic006G126500 Sobic010G072400--Sobic006G126500 Sobic006G077300 Sobic006G077300 Sobic010G072400--Sobic006G077300 Sobic003G198800 Sobic003G198800 Sobic010G072400--Sobic003G198800 Sobic001G273700 Sobic001G273700 Sobic007G172200--Sobic001G273700 Sobic007G172200--Sobic001G370900 Sobic007G172200--Sobic007G133700 Sobic003G118200 Sobic003G118200 Sobic007G172200--Sobic003G118200 Sobic009G256400 Sobic009G256400 Sobic007G172200--Sobic009G256400 Sobic003G422500 Sobic003G422500 Sobic007G172200--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic007G172200--Sobic005G001000 Sobic009G165700 Sobic009G165700 Sobic007G172200--Sobic009G165700 Sobic008G132600 Sobic008G132600 Sobic007G172200--Sobic008G132600 Sobic001G217400--Sobic010G072400 Sobic001G350900 Sobic001G350900 Sobic001G217400--Sobic001G350900 Sobic001G350700 Sobic001G350700 Sobic001G217400--Sobic001G350700 Sobic004G211900 Sobic004G211900 Sobic001G217400--Sobic004G211900 Sobic003G269800 Sobic003G269800 Sobic001G217400--Sobic003G269800 Sobic003G320700 Sobic003G320700 Sobic001G217400--Sobic003G320700 Sobic007G210500 Sobic007G210500 Sobic001G217400--Sobic007G210500 Sobic003G101850 Sobic003G101850 Sobic001G217400--Sobic003G101850 Sobic006G271200 Sobic006G271200 Sobic001G217400--Sobic006G271200 Sobic001G043100--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic001G043100--Sobic001G451400 Sobic001G043100--Sobic003G422500 Sobic001G128300 Sobic001G128300 Sobic001G043100--Sobic001G128300 Sobic003G196300 Sobic003G196300 Sobic001G043100--Sobic003G196300 Sobic003G101400 Sobic003G101400 Sobic001G043100--Sobic003G101400 Sobic006G131000 Sobic006G131000 Sobic001G043100--Sobic006G131000 Sobic004G004300 Sobic004G004300 Sobic001G043100--Sobic004G004300 Sobic008G087866 Sobic008G087866 Sobic001G043100--Sobic008G087866 Sobic007G133700--Sobic003G422500 Sobic009G053900 Sobic009G053900 Sobic007G133700--Sobic009G053900 Sobic002G146300 Sobic002G146300 Sobic007G133700--Sobic002G146300 Sobic008G098900 Sobic008G098900 Sobic007G133700--Sobic008G098900 Sobic007G133700--Sobic007G172200 Sobic007G133700--Sobic001G370900 Sobic007G075400 Sobic007G075400 Sobic007G133700--Sobic007G075400 Sobic007G133700--Sobic003G196300 Sobic007G133700--Sobic001G273700 Sobic001G370900--Sobic008G098900 Sobic001G370900--Sobic005G001000 Sobic001G370900--Sobic009G256400 Sobic001G370900--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic001G370900--Sobic003G205200 Sobic001G194200 Sobic001G194200 Sobic001G370900--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic001G370900--Sobic004G276400 Sobic008G001200 Sobic008G001200 Sobic001G370900--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic001G370900--Sobic001G457800 Sobic001G065100 Sobic001G065100 Sobic002G042600--Sobic001G065100 Sobic006G184900 Sobic006G184900 Sobic002G042600--Sobic006G184900 Sobic002G042600--Sobic008G098900 Sobic002G401500 Sobic002G401500 Sobic002G042600--Sobic002G401500 Sobic002G179400 Sobic002G179400 Sobic002G042600--Sobic002G179400 Sobic004G322400 Sobic004G322400 Sobic002G042600--Sobic004G322400 Sobic002G429300 Sobic002G429300 Sobic002G042600--Sobic002G429300 Sobic008G088872 Sobic008G088872 Sobic002G042600--Sobic008G088872 Sobic002G042600--Sobic001G370900 Sobic006G126500--Sobic007G172200 Sobic006G204900 Sobic006G204900 Sobic006G126500--Sobic006G204900 Sobic006G126500--Sobic007G075400 Sobic006G126500--Sobic010G072400 Sobic006G126500--Sobic001G370900 Sobic004G331100 Sobic004G331100 Sobic006G126500--Sobic004G331100 Sobic007G088100 Sobic007G088100 Sobic006G126500--Sobic007G088100 Sobic004G269200 Sobic004G269200 Sobic006G126500--Sobic004G269200 Sobic001G375600 Sobic001G375600 Sobic006G126500--Sobic001G375600 Sobic006G260500 Sobic006G260500 Sobic006G077300--Sobic006G260500 Sobic006G021700 Sobic006G021700 Sobic006G077300--Sobic006G021700 Sobic003G209200 Sobic003G209200 Sobic006G077300--Sobic003G209200 Sobic001G056800 Sobic001G056800 Sobic006G077300--Sobic001G056800 Sobic006G077300--Sobic002G401500 Sobic003G114400 Sobic003G114400 Sobic006G077300--Sobic003G114400 Sobic007G005500 Sobic007G005500 Sobic006G077300--Sobic007G005500 Sobic005G062200 Sobic005G062200 Sobic006G077300--Sobic005G062200 Sobic006G077300--Sobic002G042600 Sobic001G534700 Sobic001G534700 Sobic003G198800--Sobic001G534700 Sobic009G074400 Sobic009G074400 Sobic003G198800--Sobic009G074400 Sobic003G275700 Sobic003G275700 Sobic003G198800--Sobic003G275700 Sobic006G257800 Sobic006G257800 Sobic003G198800--Sobic006G257800 Sobic003G155100 Sobic003G155100 Sobic003G198800--Sobic003G155100 Sobic003G198800--Sobic001G128300 Sobic001G481900 Sobic001G481900 Sobic003G198800--Sobic001G481900 Sobic008G151100 Sobic008G151100 Sobic003G198800--Sobic008G151100 Sobic002G411600 Sobic002G411600 Sobic003G198800--Sobic002G411600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.