Gene annotation
Transcriptome id Sobic.007G088100.1
Synonym PI3K, ATVPS34, VPS34
Functional annotation phosphatidylinositol 3-kinase, root isoform, putative, expressed
UniProt A0A1B6PGJ1
Pfam PF00454
Panther DB PTHR10048 PTHR10048:SF62
NCBI CDD -
KEGG Orthology K00914; PIK3C3, phosphatidylinositol 3-kinase
Gene Ontology GO:0016773; phosphotransferase activity, alcohol group as acceptor


Orthologs (automatic annotation)
TAIR AT1G60490 : vacuolar protein sorting 34
RAP-DB (Rice) LOC_Os05g08810.1 : phosphatidylinositol 3-kinase, root isoform, putative, expressed
MaizeGDB (Corn) Zm00025a030936
Brachypodium PNT67080
Barley HORVU5Hr1G013230.1 , HORVU5Hr1G013230.3 , HORVU5Hr1G013230.4 , HORVU5Hr1G013230.5
Wheat TraesCS5A02G054400 , TraesCS5B02G062000 , TraesCS5B02G062000 , TraesCS5B02G062000 , TraesCS5D02G065700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
2 Sobic.001G375600 transmembrane protein, putative, expressed -
3 Sobic.007G172200 inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase, putative, expressed K18081: myotubularin-related protein 1/2
4 Sobic.003G259100 GPI transamidase component family protein, putative, expressed K05289: GPI-anchor transamidase subunit GAA1
5 Sobic.004G065000 expressed protein -
6 Sobic.006G037700 phosphoribulokinase/Uridine kinase family protein, expressed -
7 Sobic.006G126500 OsFBX146 - F-box domain containing protein, expressed -
8 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
9 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
10 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
11 Sobic.003G304200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
12 Sobic.003G089000 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
13 Sobic.003G170700 expressed protein -
14 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
15 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
16 Sobic.010G251200 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K12447: UDP-sugar pyrophosphorylase
17 Sobic.009G154500 sec23/Sec24 zinc finger family protein, expressed -
18 Sobic.005G090300 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
19 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
20 Sobic.009G133500 expressed protein -


Gene co-expression network
sample Sobic007G088100 Sobic007G088100 Sobic001G273700 Sobic001G273700 Sobic007G088100--Sobic001G273700 Sobic001G375600 Sobic001G375600 Sobic007G088100--Sobic001G375600 Sobic007G172200 Sobic007G172200 Sobic007G088100--Sobic007G172200 Sobic003G259100 Sobic003G259100 Sobic007G088100--Sobic003G259100 Sobic004G065000 Sobic004G065000 Sobic007G088100--Sobic004G065000 Sobic006G037700 Sobic006G037700 Sobic007G088100--Sobic006G037700 Sobic006G126500 Sobic006G126500 Sobic007G088100--Sobic006G126500 Sobic010G072800 Sobic010G072800 Sobic007G088100--Sobic010G072800 Sobic006G204900 Sobic006G204900 Sobic007G088100--Sobic006G204900 Sobic001G273700--Sobic007G172200 Sobic001G263600 Sobic001G263600 Sobic001G273700--Sobic001G263600 Sobic008G099800 Sobic008G099800 Sobic001G273700--Sobic008G099800 Sobic001G347500 Sobic001G347500 Sobic001G273700--Sobic001G347500 Sobic007G133700 Sobic007G133700 Sobic001G273700--Sobic007G133700 Sobic007G163100 Sobic007G163100 Sobic001G273700--Sobic007G163100 Sobic001G457900 Sobic001G457900 Sobic001G273700--Sobic001G457900 Sobic001G313700 Sobic001G313700 Sobic001G273700--Sobic001G313700 Sobic002G042600 Sobic002G042600 Sobic001G273700--Sobic002G042600 Sobic001G007100 Sobic001G007100 Sobic001G375600--Sobic001G007100 Sobic001G375600--Sobic010G072800 Sobic009G165400 Sobic009G165400 Sobic001G375600--Sobic009G165400 Sobic001G375600--Sobic001G273700 Sobic001G375600--Sobic007G088100 Sobic003G089000 Sobic003G089000 Sobic001G375600--Sobic003G089000 Sobic004G269200 Sobic004G269200 Sobic001G375600--Sobic004G269200 Sobic001G375600--Sobic003G259100 Sobic001G375600--Sobic006G204900 Sobic007G172200--Sobic001G273700 Sobic001G370900 Sobic001G370900 Sobic007G172200--Sobic001G370900 Sobic007G172200--Sobic007G133700 Sobic003G118200 Sobic003G118200 Sobic007G172200--Sobic003G118200 Sobic009G256400 Sobic009G256400 Sobic007G172200--Sobic009G256400 Sobic003G422500 Sobic003G422500 Sobic007G172200--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic007G172200--Sobic005G001000 Sobic009G165700 Sobic009G165700 Sobic007G172200--Sobic009G165700 Sobic008G132600 Sobic008G132600 Sobic007G172200--Sobic008G132600 Sobic004G113400 Sobic004G113400 Sobic003G259100--Sobic004G113400 Sobic003G259100--Sobic008G099800 Sobic001G050600 Sobic001G050600 Sobic003G259100--Sobic001G050600 Sobic003G072200 Sobic003G072200 Sobic003G259100--Sobic003G072200 Sobic003G259100--Sobic001G273700 Sobic001G058700 Sobic001G058700 Sobic003G259100--Sobic001G058700 Sobic003G259100--Sobic001G347500 Sobic001G219900 Sobic001G219900 Sobic003G259100--Sobic001G219900 Sobic010G034000 Sobic010G034000 Sobic003G259100--Sobic010G034000 Sobic007G075400 Sobic007G075400 Sobic004G065000--Sobic007G075400 Sobic004G331100 Sobic004G331100 Sobic004G065000--Sobic004G331100 Sobic009G133500 Sobic009G133500 Sobic004G065000--Sobic009G133500 Sobic004G065000--Sobic007G163100 Sobic004G065000--Sobic007G133700 Sobic010G139600 Sobic010G139600 Sobic004G065000--Sobic010G139600 Sobic004G065000--Sobic001G313700 Sobic004G065000--Sobic001G273700 Sobic001G085300 Sobic001G085300 Sobic004G065000--Sobic001G085300 Sobic004G051200 Sobic004G051200 Sobic006G037700--Sobic004G051200 Sobic001G065000 Sobic001G065000 Sobic006G037700--Sobic001G065000 Sobic006G037700--Sobic008G099800 Sobic006G037700--Sobic003G072200 Sobic007G098500 Sobic007G098500 Sobic006G037700--Sobic007G098500 Sobic006G035300 Sobic006G035300 Sobic006G037700--Sobic006G035300 Sobic006G037700--Sobic001G050600 Sobic006G037700--Sobic003G259100 Sobic006G037700--Sobic001G058700 Sobic006G126500--Sobic007G172200 Sobic006G126500--Sobic006G204900 Sobic006G126500--Sobic007G075400 Sobic010G072400 Sobic010G072400 Sobic006G126500--Sobic010G072400 Sobic006G126500--Sobic001G370900 Sobic006G126500--Sobic004G331100 Sobic006G126500--Sobic007G088100 Sobic006G126500--Sobic004G269200 Sobic006G126500--Sobic001G375600 Sobic010G072800--Sobic001G375600 Sobic006G271200 Sobic006G271200 Sobic010G072800--Sobic006G271200 Sobic002G430000 Sobic002G430000 Sobic010G072800--Sobic002G430000 Sobic001G207400 Sobic001G207400 Sobic010G072800--Sobic001G207400 Sobic004G209800 Sobic004G209800 Sobic010G072800--Sobic004G209800 Sobic010G072800--Sobic003G089000 Sobic007G060201 Sobic007G060201 Sobic010G072800--Sobic007G060201 Sobic010G072800--Sobic006G204900 Sobic010G072800--Sobic004G269200 Sobic003G322700 Sobic003G322700 Sobic006G204900--Sobic003G322700 Sobic006G204900--Sobic001G207400 Sobic006G204900--Sobic004G269200 Sobic006G204900--Sobic009G133500 Sobic010G001500 Sobic010G001500 Sobic006G204900--Sobic010G001500 Sobic004G068400 Sobic004G068400 Sobic006G204900--Sobic004G068400 Sobic004G355000 Sobic004G355000 Sobic006G204900--Sobic004G355000 Sobic003G320700 Sobic003G320700 Sobic006G204900--Sobic003G320700 Sobic006G204900--Sobic002G430000
Octagon: transcription factors


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