Gene annotation
Transcriptome id Sobic.009G154500.1,Sobic.009G154500.2
Synonym Sb09g021790
Functional annotation sec23/Sec24 zinc finger family protein, expressed
UniProt C5YYS4 , A0A1Z5R402
Pfam PF04810 PF04815 PF04811 PF04811 PF04815
Panther DB PTHR13803 PTHR13803:SF10
NCBI CDD KOG1985; Vesicle coat complex COPII, subunit SEC24/subunit SFB2
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006888endoplasmic reticulum to Golgi vesicle-mediated transport GO:0006886intracellular protein transport GO:0006888endoplasmic reticulum to Golgi vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT2G27460 : sec23/sec24 transport family protein
RAP-DB (Rice) LOC_Os05g37120.1 : sec23/Sec24 zinc finger family protein, expressed
MaizeGDB (Corn) Zm00025a037250 , Zm00025a043803
Brachypodium KQK06025
Barley HORVU1Hr1G073890.8 , HORVU1Hr1G073890.9 , HORVU1Hr1G073890.2 , HORVU1Hr1G073890.3 , HORVU1Hr1G073890.1 , HORVU1Hr1G073890.6 , HORVU1Hr1G073890.7 , HORVU1Hr1G073890.4 , HORVU1Hr1G073890.5 , HORVU1Hr1G073890.10 , HORVU1Hr1G073890.12 , HORVU1Hr1G073890.11
Wheat TraesCS1A02G276100 , TraesCS1A02G276100 , TraesCS1A02G276100 , TraesCS1B02G285300 , TraesCS1B02G285300 , TraesCS1D02G275600 , TraesCS1D02G275600
Populus -


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cDNA sequences
Sobic.009G154500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
2 Sobic.009G166600 nucleoside-triphosphatase, putative, expressed -
3 Sobic.007G042400 HEAT repeat family protein, putative, expressed -
4 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
5 Sobic.009G249700 expressed protein -
6 Sobic.007G088100 phosphatidylinositol 3-kinase, root isoform, putative, expressed K00914: PIK3C3, phosphatidylinositol 3-kinase
7 Sobic.006G037700 phosphoribulokinase/Uridine kinase family protein, expressed -
8 Sobic.002G405400 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase, putative, expressed K01001: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase
9 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
10 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
11 Sobic.005G034700 PHD-finger family protein, expressed -
12 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
13 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
14 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
15 Sobic.007G132100 myrosinase precursor, putative, expressed -
16 Sobic.003G152400 WD domain containing protein, putative, expressed K17601: WD repeat-containing protein 81
17 Sobic.006G166200 Alg9-like mannosyltransferase protein, putative, expressed K03847: alpha-1,6-mannosyltransferase
18 Sobic.009G092400 zinc finger, C3HC4 type family protein, expressed -
19 Sobic.002G083500 OsFBX136 - F-box domain containing protein, expressed -
20 Sobic.006G203300 GPR89A, putative, expressed -


Gene co-expression network
sample Sobic009G154500 Sobic009G154500 Sobic006G234700 Sobic006G234700 Sobic009G154500--Sobic006G234700 Sobic009G166600 Sobic009G166600 Sobic009G154500--Sobic009G166600 Sobic007G042400 Sobic007G042400 Sobic009G154500--Sobic007G042400 Sobic003G394200 Sobic003G394200 Sobic009G154500--Sobic003G394200 Sobic009G249700 Sobic009G249700 Sobic009G154500--Sobic009G249700 Sobic007G088100 Sobic007G088100 Sobic009G154500--Sobic007G088100 Sobic006G037700 Sobic006G037700 Sobic009G154500--Sobic006G037700 Sobic002G405400 Sobic002G405400 Sobic009G154500--Sobic002G405400 Sobic007G218000 Sobic007G218000 Sobic009G154500--Sobic007G218000 Sobic004G096400 Sobic004G096400 Sobic006G234700--Sobic004G096400 Sobic010G059500 Sobic010G059500 Sobic006G234700--Sobic010G059500 Sobic009G192300 Sobic009G192300 Sobic006G234700--Sobic009G192300 Sobic006G234700--Sobic007G042400 Sobic003G444800 Sobic003G444800 Sobic006G234700--Sobic003G444800 Sobic001G493200 Sobic001G493200 Sobic006G234700--Sobic001G493200 Sobic009G084900 Sobic009G084900 Sobic006G234700--Sobic009G084900 Sobic001G433800 Sobic001G433800 Sobic006G234700--Sobic001G433800 Sobic002G083500 Sobic002G083500 Sobic006G234700--Sobic002G083500 Sobic002G313900 Sobic002G313900 Sobic009G166600--Sobic002G313900 Sobic005G114800 Sobic005G114800 Sobic009G166600--Sobic005G114800 Sobic006G210700 Sobic006G210700 Sobic009G166600--Sobic006G210700 Sobic005G197100 Sobic005G197100 Sobic009G166600--Sobic005G197100 Sobic009G166600--Sobic009G249700 Sobic008G021000 Sobic008G021000 Sobic009G166600--Sobic008G021000 Sobic009G166600--Sobic003G394200 Sobic002G292900 Sobic002G292900 Sobic009G166600--Sobic002G292900 Sobic006G128100 Sobic006G128100 Sobic009G166600--Sobic006G128100 Sobic007G042400--Sobic003G444800 Sobic007G042400--Sobic006G234700 Sobic007G042400--Sobic009G084900 Sobic003G152400 Sobic003G152400 Sobic007G042400--Sobic003G152400 Sobic007G042400--Sobic010G059500 Sobic009G247400 Sobic009G247400 Sobic007G042400--Sobic009G247400 Sobic003G059750 Sobic003G059750 Sobic007G042400--Sobic003G059750 Sobic004G357100 Sobic004G357100 Sobic007G042400--Sobic004G357100 Sobic001G311500 Sobic001G311500 Sobic007G042400--Sobic001G311500 Sobic004G084500 Sobic004G084500 Sobic003G394200--Sobic004G084500 Sobic006G203300 Sobic006G203300 Sobic003G394200--Sobic006G203300 Sobic003G394200--Sobic006G128100 Sobic010G223400 Sobic010G223400 Sobic003G394200--Sobic010G223400 Sobic001G308400 Sobic001G308400 Sobic003G394200--Sobic001G308400 Sobic009G049400 Sobic009G049400 Sobic003G394200--Sobic009G049400 Sobic003G270600 Sobic003G270600 Sobic003G394200--Sobic003G270600 Sobic003G189600 Sobic003G189600 Sobic003G394200--Sobic003G189600 Sobic001G369000 Sobic001G369000 Sobic003G394200--Sobic001G369000 Sobic009G249700--Sobic007G218000 Sobic003G093800 Sobic003G093800 Sobic009G249700--Sobic003G093800 Sobic009G249700--Sobic003G189600 Sobic009G249700--Sobic003G394200 Sobic005G034700 Sobic005G034700 Sobic009G249700--Sobic005G034700 Sobic004G345400 Sobic004G345400 Sobic009G249700--Sobic004G345400 Sobic010G169900 Sobic010G169900 Sobic009G249700--Sobic010G169900 Sobic009G249700--Sobic003G444800 Sobic007G042900 Sobic007G042900 Sobic009G249700--Sobic007G042900 Sobic001G273700 Sobic001G273700 Sobic007G088100--Sobic001G273700 Sobic001G375600 Sobic001G375600 Sobic007G088100--Sobic001G375600 Sobic007G172200 Sobic007G172200 Sobic007G088100--Sobic007G172200 Sobic003G259100 Sobic003G259100 Sobic007G088100--Sobic003G259100 Sobic004G065000 Sobic004G065000 Sobic007G088100--Sobic004G065000 Sobic007G088100--Sobic006G037700 Sobic006G126500 Sobic006G126500 Sobic007G088100--Sobic006G126500 Sobic010G072800 Sobic010G072800 Sobic007G088100--Sobic010G072800 Sobic006G204900 Sobic006G204900 Sobic007G088100--Sobic006G204900 Sobic004G051200 Sobic004G051200 Sobic006G037700--Sobic004G051200 Sobic001G065000 Sobic001G065000 Sobic006G037700--Sobic001G065000 Sobic008G099800 Sobic008G099800 Sobic006G037700--Sobic008G099800 Sobic003G072200 Sobic003G072200 Sobic006G037700--Sobic003G072200 Sobic007G098500 Sobic007G098500 Sobic006G037700--Sobic007G098500 Sobic006G035300 Sobic006G035300 Sobic006G037700--Sobic006G035300 Sobic001G050600 Sobic001G050600 Sobic006G037700--Sobic001G050600 Sobic006G037700--Sobic003G259100 Sobic001G058700 Sobic001G058700 Sobic006G037700--Sobic001G058700 Sobic006G196300 Sobic006G196300 Sobic002G405400--Sobic006G196300 Sobic004G206700 Sobic004G206700 Sobic002G405400--Sobic004G206700 Sobic010G020400 Sobic010G020400 Sobic002G405400--Sobic010G020400 Sobic008G055900 Sobic008G055900 Sobic002G405400--Sobic008G055900 Sobic004G241900 Sobic004G241900 Sobic002G405400--Sobic004G241900 Sobic010G223300 Sobic010G223300 Sobic002G405400--Sobic010G223300 Sobic008G085700 Sobic008G085700 Sobic002G405400--Sobic008G085700 Sobic006G260500 Sobic006G260500 Sobic002G405400--Sobic006G260500 Sobic006G180000 Sobic006G180000 Sobic002G405400--Sobic006G180000 Sobic007G132100 Sobic007G132100 Sobic007G218000--Sobic007G132100 Sobic004G072100 Sobic004G072100 Sobic007G218000--Sobic004G072100 Sobic002G112700 Sobic002G112700 Sobic007G218000--Sobic002G112700 Sobic006G131000 Sobic006G131000 Sobic007G218000--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic007G218000--Sobic009G044800 Sobic010G204400 Sobic010G204400 Sobic007G218000--Sobic010G204400 Sobic006G012500 Sobic006G012500 Sobic007G218000--Sobic006G012500 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400
Octagon: transcription factors


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