Gene annotation
Transcriptome id Sobic.009G092400.1,Sobic.009G092400.2,Sobic.009G092400.3
Synonym Sb09g010430
Functional annotation zinc finger, C3HC4 type family protein, expressed
UniProt A0A1B6P7K2 , C5YVP6 , A0A1B6P7I6
Pfam PF13639
Panther DB PTHR15860 PTHR15860:SF4
NCBI CDD KOG4638; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G01960 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g25180.1 : zinc finger, C3HC4 type family protein, expressed
MaizeGDB (Corn) Zm00025a043280
Brachypodium KQK06914 , KQK06915
Barley HORVU1Hr1G033470.1 , HORVU1Hr1G033470.2 , HORVU1Hr1G033470.3 , HORVU1Hr1G033470.5 , HORVU1Hr1G033470.6 , HORVU1Hr1G033470.7 , HORVU1Hr1G033470.4
Wheat TraesCS1B02G152000 , TraesCS1B02G152000 , TraesCS3A02G095400 , TraesCS1D02G133300 , TraesCS1A02G137400
Populus -


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cDNA sequences
Sobic.009G092400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
2 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
3 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
4 Sobic.009G249700 expressed protein -
5 Sobic.007G125000 OsAPRL4 adenosine 5\'-phosphosulfate reductase-like OsAPRL4, expressed -
6 Sobic.004G209700 FAR1 family protein, expressed -
7 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
8 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
9 Sobic.007G132100 myrosinase precursor, putative, expressed -
10 Sobic.004G028100 expressed protein -
11 Sobic.001G449400 ariadne-1, putative, expressed K11968: ariadne-1
12 Sobic.004G092500 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
13 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
14 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
15 Sobic.002G083500 OsFBX136 - F-box domain containing protein, expressed -
16 Sobic.004G323700 zinc finger family protein, putative, expressed -
17 Sobic.001G384300 myb-like DNA-binding domain containing protein, expressed -
18 Sobic.006G174850 - K15193: SPTY2D1, protein SPT2
19 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
20 Sobic.010G226000 expressed protein -


Gene co-expression network
sample Sobic009G092400 Sobic009G092400 Sobic007G218000 Sobic007G218000 Sobic009G092400--Sobic007G218000 Sobic005G160400 Sobic005G160400 Sobic009G092400--Sobic005G160400 Sobic009G044800 Sobic009G044800 Sobic009G092400--Sobic009G044800 Sobic009G249700 Sobic009G249700 Sobic009G092400--Sobic009G249700 Sobic007G125000 Sobic007G125000 Sobic009G092400--Sobic007G125000 Sobic004G209700 Sobic004G209700 Sobic009G092400--Sobic004G209700 Sobic002G303600 Sobic002G303600 Sobic009G092400--Sobic002G303600 Sobic006G180000 Sobic006G180000 Sobic009G092400--Sobic006G180000 Sobic007G132100 Sobic007G132100 Sobic009G092400--Sobic007G132100 Sobic007G218000--Sobic007G132100 Sobic004G072100 Sobic004G072100 Sobic007G218000--Sobic004G072100 Sobic002G112700 Sobic002G112700 Sobic007G218000--Sobic002G112700 Sobic006G131000 Sobic006G131000 Sobic007G218000--Sobic006G131000 Sobic007G218000--Sobic009G044800 Sobic010G204400 Sobic010G204400 Sobic007G218000--Sobic010G204400 Sobic006G012500 Sobic006G012500 Sobic007G218000--Sobic006G012500 Sobic007G218000--Sobic009G249700 Sobic007G218000--Sobic009G092400 Sobic005G160400--Sobic009G092400 Sobic007G084100 Sobic007G084100 Sobic005G160400--Sobic007G084100 Sobic010G237900 Sobic010G237900 Sobic005G160400--Sobic010G237900 Sobic010G092300 Sobic010G092300 Sobic005G160400--Sobic010G092300 Sobic002G347000 Sobic002G347000 Sobic005G160400--Sobic002G347000 Sobic001G473600 Sobic001G473600 Sobic005G160400--Sobic001G473600 Sobic010G265300 Sobic010G265300 Sobic005G160400--Sobic010G265300 Sobic006G121300 Sobic006G121300 Sobic005G160400--Sobic006G121300 Sobic001G114500 Sobic001G114500 Sobic005G160400--Sobic001G114500 Sobic003G360400 Sobic003G360400 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic002G045600 Sobic002G045600 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic001G433800 Sobic001G433800 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic009G249700--Sobic007G218000 Sobic003G093800 Sobic003G093800 Sobic009G249700--Sobic003G093800 Sobic003G189600 Sobic003G189600 Sobic009G249700--Sobic003G189600 Sobic003G394200 Sobic003G394200 Sobic009G249700--Sobic003G394200 Sobic005G034700 Sobic005G034700 Sobic009G249700--Sobic005G034700 Sobic004G345400 Sobic004G345400 Sobic009G249700--Sobic004G345400 Sobic010G169900 Sobic010G169900 Sobic009G249700--Sobic010G169900 Sobic003G444800 Sobic003G444800 Sobic009G249700--Sobic003G444800 Sobic007G042900 Sobic007G042900 Sobic009G249700--Sobic007G042900 Sobic007G125000--Sobic007G218000 Sobic007G125000--Sobic002G112700 Sobic007G125000--Sobic009G092400 Sobic007G125000--Sobic007G132100 Sobic009G192300 Sobic009G192300 Sobic007G125000--Sobic009G192300 Sobic002G164300 Sobic002G164300 Sobic007G125000--Sobic002G164300 Sobic007G008900 Sobic007G008900 Sobic007G125000--Sobic007G008900 Sobic009G126600 Sobic009G126600 Sobic007G125000--Sobic009G126600 Sobic007G125000--Sobic004G072100 Sobic004G209700--Sobic001G433800 Sobic004G209700--Sobic003G360400 Sobic006G096900 Sobic006G096900 Sobic004G209700--Sobic006G096900 Sobic002G154000 Sobic002G154000 Sobic004G209700--Sobic002G154000 Sobic010G226000 Sobic010G226000 Sobic004G209700--Sobic010G226000 Sobic003G241700 Sobic003G241700 Sobic004G209700--Sobic003G241700 Sobic004G209700--Sobic009G044800 Sobic004G209700--Sobic009G092400 Sobic002G083500 Sobic002G083500 Sobic004G209700--Sobic002G083500 Sobic010G261600 Sobic010G261600 Sobic002G303600--Sobic010G261600 Sobic004G323700 Sobic004G323700 Sobic002G303600--Sobic004G323700 Sobic004G178200 Sobic004G178200 Sobic002G303600--Sobic004G178200 Sobic002G303600--Sobic006G180000 Sobic002G303600--Sobic007G218000 Sobic004G028100 Sobic004G028100 Sobic002G303600--Sobic004G028100 Sobic003G422900 Sobic003G422900 Sobic002G303600--Sobic003G422900 Sobic002G303600--Sobic009G092400 Sobic004G003401 Sobic004G003401 Sobic002G303600--Sobic004G003401 Sobic006G180000--Sobic002G303600 Sobic002G047700 Sobic002G047700 Sobic006G180000--Sobic002G047700 Sobic003G264100 Sobic003G264100 Sobic006G180000--Sobic003G264100 Sobic010G223300 Sobic010G223300 Sobic006G180000--Sobic010G223300 Sobic006G180000--Sobic009G092400 Sobic001G007000 Sobic001G007000 Sobic006G180000--Sobic001G007000 Sobic010G020400 Sobic010G020400 Sobic006G180000--Sobic010G020400 Sobic004G092500 Sobic004G092500 Sobic006G180000--Sobic004G092500 Sobic006G180000--Sobic004G028100 Sobic007G132100--Sobic007G218000 Sobic007G132100--Sobic004G072100 Sobic004G039600 Sobic004G039600 Sobic007G132100--Sobic004G039600 Sobic007G132100--Sobic004G178200 Sobic007G132100--Sobic006G131000 Sobic007G132100--Sobic006G012500 Sobic007G132100--Sobic009G044800 Sobic008G099800 Sobic008G099800 Sobic007G132100--Sobic008G099800 Sobic007G132100--Sobic010G204400
Octagon: transcription factors


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