Gene annotation
Transcriptome id Sobic.003G089000.1
Synonym Sb03g007490, UBC23, PFU2
Functional annotation ubiquitin conjugating enzyme protein, putative, expressed
UniProt C5XE30
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF97
NCBI CDD -
KEGG Orthology K10581; ubiquitin-conjugating enzyme E2 O
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G16920 : ubiquitin-conjugating enzyme 23
RAP-DB (Rice) LOC_Os01g03520.1 : ubiquitin conjugating enzyme protein, putative, expressed
MaizeGDB (Corn) Zm00025a023661 , Zm00025a035534
Brachypodium KQK02501
Barley HORVU3Hr1G004520.7 , HORVU3Hr1G004520.2 , HORVU3Hr1G004520.3 , HORVU3Hr1G004520.1 , HORVU3Hr1G004520.6 , HORVU3Hr1G004520.4 , HORVU3Hr1G004520.8 , HORVU3Hr1G004520.5 , HORVU3Hr1G004520.9 , HORVU3Hr1G004520.10 , HORVU3Hr1G004520.11 , HORVU3Hr1G004520.12 , HORVU3Hr1G004520.13 , HORVU3Hr1G004520.14
Wheat TraesCS3D02G032000 , TraesCS3A02G047700 , TraesCS3A02G047700 , TraesCS3A02G047700 , TraesCS3A02G047700 , TraesCS3A02G047700 , TraesCS3A02G047700 , TraesCS3B02G034500 , TraesCS3B02G034500 , TraesCS3B02G034500 , TraesCS3B02G034500 , TraesCS3B02G034500 , TraesCS3B02G034500 , TraesCS3D02G032000 , TraesCS3D02G032000 , TraesCS3D02G032000
Populus -


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cDNA sequences
Sobic.003G089000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G177300 SPRY-domain containing protein, putative, expressed -
2 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
3 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
4 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
5 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
6 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
7 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
8 Sobic.001G375600 transmembrane protein, putative, expressed -
9 Sobic.007G000200 expressed protein -
10 Sobic.006G126500 OsFBX146 - F-box domain containing protein, expressed -
11 Sobic.004G065000 expressed protein -
12 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
13 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
14 Sobic.002G147600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
15 Sobic.001G436900 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
16 Sobic.007G088100 phosphatidylinositol 3-kinase, root isoform, putative, expressed K00914: PIK3C3, phosphatidylinositol 3-kinase
17 Sobic.009G133500 expressed protein -
18 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
19 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
20 Sobic.006G115600 expressed protein -


Gene co-expression network
sample Sobic003G089000 Sobic003G089000 Sobic004G177300 Sobic004G177300 Sobic003G089000--Sobic004G177300 Sobic006G032300 Sobic006G032300 Sobic003G089000--Sobic006G032300 Sobic002G335600 Sobic002G335600 Sobic003G089000--Sobic002G335600 Sobic010G072800 Sobic010G072800 Sobic003G089000--Sobic010G072800 Sobic001G273700 Sobic001G273700 Sobic003G089000--Sobic001G273700 Sobic002G142900 Sobic002G142900 Sobic003G089000--Sobic002G142900 Sobic001G263600 Sobic001G263600 Sobic003G089000--Sobic001G263600 Sobic001G375600 Sobic001G375600 Sobic003G089000--Sobic001G375600 Sobic007G000200 Sobic007G000200 Sobic003G089000--Sobic007G000200 Sobic002G008800 Sobic002G008800 Sobic004G177300--Sobic002G008800 Sobic004G177300--Sobic003G089000 Sobic002G262900 Sobic002G262900 Sobic004G177300--Sobic002G262900 Sobic004G065000 Sobic004G065000 Sobic004G177300--Sobic004G065000 Sobic010G020300 Sobic010G020300 Sobic004G177300--Sobic010G020300 Sobic010G261600 Sobic010G261600 Sobic004G177300--Sobic010G261600 Sobic005G059600 Sobic005G059600 Sobic004G177300--Sobic005G059600 Sobic009G133500 Sobic009G133500 Sobic004G177300--Sobic009G133500 Sobic002G263600 Sobic002G263600 Sobic004G177300--Sobic002G263600 Sobic006G032300--Sobic002G335600 Sobic008G088872 Sobic008G088872 Sobic006G032300--Sobic008G088872 Sobic004G053500 Sobic004G053500 Sobic006G032300--Sobic004G053500 Sobic007G018400 Sobic007G018400 Sobic006G032300--Sobic007G018400 Sobic006G032300--Sobic001G273700 Sobic002G042600 Sobic002G042600 Sobic006G032300--Sobic002G042600 Sobic001G191700 Sobic001G191700 Sobic006G032300--Sobic001G191700 Sobic009G131300 Sobic009G131300 Sobic006G032300--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic006G032300--Sobic002G429300 Sobic006G184900 Sobic006G184900 Sobic002G335600--Sobic006G184900 Sobic005G162500 Sobic005G162500 Sobic002G335600--Sobic005G162500 Sobic002G335600--Sobic006G032300 Sobic002G335600--Sobic009G131300 Sobic002G335600--Sobic002G429300 Sobic001G493700 Sobic001G493700 Sobic002G335600--Sobic001G493700 Sobic002G335600--Sobic008G088872 Sobic004G040500 Sobic004G040500 Sobic002G335600--Sobic004G040500 Sobic002G335600--Sobic004G053500 Sobic010G072800--Sobic001G375600 Sobic006G271200 Sobic006G271200 Sobic010G072800--Sobic006G271200 Sobic002G430000 Sobic002G430000 Sobic010G072800--Sobic002G430000 Sobic001G207400 Sobic001G207400 Sobic010G072800--Sobic001G207400 Sobic004G209800 Sobic004G209800 Sobic010G072800--Sobic004G209800 Sobic010G072800--Sobic003G089000 Sobic007G060201 Sobic007G060201 Sobic010G072800--Sobic007G060201 Sobic006G204900 Sobic006G204900 Sobic010G072800--Sobic006G204900 Sobic004G269200 Sobic004G269200 Sobic010G072800--Sobic004G269200 Sobic007G172200 Sobic007G172200 Sobic001G273700--Sobic007G172200 Sobic001G273700--Sobic001G263600 Sobic008G099800 Sobic008G099800 Sobic001G273700--Sobic008G099800 Sobic001G347500 Sobic001G347500 Sobic001G273700--Sobic001G347500 Sobic007G133700 Sobic007G133700 Sobic001G273700--Sobic007G133700 Sobic007G163100 Sobic007G163100 Sobic001G273700--Sobic007G163100 Sobic001G457900 Sobic001G457900 Sobic001G273700--Sobic001G457900 Sobic001G313700 Sobic001G313700 Sobic001G273700--Sobic001G313700 Sobic001G273700--Sobic002G042600 Sobic004G131300 Sobic004G131300 Sobic002G142900--Sobic004G131300 Sobic002G142900--Sobic001G263600 Sobic002G133300 Sobic002G133300 Sobic002G142900--Sobic002G133300 Sobic003G195000 Sobic003G195000 Sobic002G142900--Sobic003G195000 Sobic007G054800 Sobic007G054800 Sobic002G142900--Sobic007G054800 Sobic002G142900--Sobic005G162500 Sobic003G104000 Sobic003G104000 Sobic002G142900--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic002G142900--Sobic002G256700 Sobic002G142900--Sobic002G335600 Sobic001G263600--Sobic008G088872 Sobic001G263600--Sobic002G429300 Sobic001G263600--Sobic002G142900 Sobic005G062200 Sobic005G062200 Sobic001G263600--Sobic005G062200 Sobic008G098900 Sobic008G098900 Sobic001G263600--Sobic008G098900 Sobic001G263600--Sobic002G042600 Sobic001G263600--Sobic001G273700 Sobic003G072200 Sobic003G072200 Sobic001G263600--Sobic003G072200 Sobic001G263600--Sobic009G131300 Sobic001G007100 Sobic001G007100 Sobic001G375600--Sobic001G007100 Sobic001G375600--Sobic010G072800 Sobic009G165400 Sobic009G165400 Sobic001G375600--Sobic009G165400 Sobic001G375600--Sobic001G273700 Sobic007G088100 Sobic007G088100 Sobic001G375600--Sobic007G088100 Sobic001G375600--Sobic003G089000 Sobic001G375600--Sobic004G269200 Sobic003G259100 Sobic003G259100 Sobic001G375600--Sobic003G259100 Sobic001G375600--Sobic006G204900 Sobic007G000200--Sobic006G032300 Sobic003G046300 Sobic003G046300 Sobic007G000200--Sobic003G046300 Sobic008G002300 Sobic008G002300 Sobic007G000200--Sobic008G002300 Sobic002G245000 Sobic002G245000 Sobic007G000200--Sobic002G245000 Sobic001G430400 Sobic001G430400 Sobic007G000200--Sobic001G430400 Sobic002G164200 Sobic002G164200 Sobic007G000200--Sobic002G164200 Sobic007G000200--Sobic003G089000 Sobic001G542450 Sobic001G542450 Sobic007G000200--Sobic001G542450 Sobic006G088200 Sobic006G088200 Sobic007G000200--Sobic006G088200
Octagon: transcription factors


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