Gene annotation
Transcriptome id Sobic.004G351300.1
Synonym Sb04g037810
Functional annotation protein binding protein, putative, expressed
UniProt C5XWK6
Pfam PF13920
Panther DB PTHR10044 PTHR10044:SF136
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G04460 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g57750.1 : protein binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a032748
Brachypodium KQK01460 , KQK01459
Barley HORVU6Hr1G092920.1 , HORVU6Hr1G092920.2
Wheat TraesCS6D02G389100 , TraesCS6B02G449800 , TraesCS6B02G449800 , TraesCS6A02G405400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
2 Sobic.004G016000 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
3 Sobic.006G237900 UBA/TS-N domain containing protein, expressed -
4 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
5 Sobic.003G101850 - -
6 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
7 Sobic.006G126500 OsFBX146 - F-box domain containing protein, expressed -
8 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
9 Sobic.003G089000 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
10 Sobic.001G217400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
11 Sobic.004G177300 SPRY-domain containing protein, putative, expressed -
12 Sobic.004G209800 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
13 Sobic.010G072400 SAC domain containing protein, putative, expressed -
14 Sobic.009G133500 expressed protein -
15 Sobic.006G214200 aminotransferase, putative, expressed K16871: 4-aminobutyrate---pyruvate transaminase
16 Sobic.009G165400 lipin, N-terminal conserved region family protein, expressed K15728: phosphatidate phosphatase LPIN
17 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
18 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
19 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
20 Sobic.001G436900 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9


Gene co-expression network
sample Sobic004G351300 Sobic004G351300 Sobic005G059600 Sobic005G059600 Sobic004G351300--Sobic005G059600 Sobic004G016000 Sobic004G016000 Sobic004G351300--Sobic004G016000 Sobic006G237900 Sobic006G237900 Sobic004G351300--Sobic006G237900 Sobic006G271200 Sobic006G271200 Sobic004G351300--Sobic006G271200 Sobic003G101850 Sobic003G101850 Sobic004G351300--Sobic003G101850 Sobic010G072800 Sobic010G072800 Sobic004G351300--Sobic010G072800 Sobic006G126500 Sobic006G126500 Sobic004G351300--Sobic006G126500 Sobic001G003000 Sobic001G003000 Sobic004G351300--Sobic001G003000 Sobic003G089000 Sobic003G089000 Sobic004G351300--Sobic003G089000 Sobic005G059600--Sobic004G351300 Sobic005G059600--Sobic006G271200 Sobic002G270500 Sobic002G270500 Sobic005G059600--Sobic002G270500 Sobic005G059600--Sobic006G237900 Sobic004G177300 Sobic004G177300 Sobic005G059600--Sobic004G177300 Sobic010G261600 Sobic010G261600 Sobic005G059600--Sobic010G261600 Sobic004G228800 Sobic004G228800 Sobic005G059600--Sobic004G228800 Sobic001G273700 Sobic001G273700 Sobic005G059600--Sobic001G273700 Sobic005G059600--Sobic004G016000 Sobic004G016000--Sobic004G351300 Sobic004G209800 Sobic004G209800 Sobic004G016000--Sobic004G209800 Sobic004G016000--Sobic010G072800 Sobic002G156000 Sobic002G156000 Sobic004G016000--Sobic002G156000 Sobic004G016000--Sobic005G059600 Sobic007G075500 Sobic007G075500 Sobic004G016000--Sobic007G075500 Sobic004G016000--Sobic002G270500 Sobic009G133500 Sobic009G133500 Sobic004G016000--Sobic009G133500 Sobic004G016000--Sobic003G089000 Sobic006G237900--Sobic006G271200 Sobic006G237900--Sobic004G351300 Sobic006G237900--Sobic001G003000 Sobic006G237900--Sobic005G059600 Sobic010G129600 Sobic010G129600 Sobic006G237900--Sobic010G129600 Sobic010G130200 Sobic010G130200 Sobic006G237900--Sobic010G130200 Sobic010G043400 Sobic010G043400 Sobic006G237900--Sobic010G043400 Sobic001G089800 Sobic001G089800 Sobic006G237900--Sobic001G089800 Sobic001G436900 Sobic001G436900 Sobic006G237900--Sobic001G436900 Sobic006G271200--Sobic001G003000 Sobic006G271200--Sobic006G237900 Sobic009G126900 Sobic009G126900 Sobic006G271200--Sobic009G126900 Sobic006G271200--Sobic010G130200 Sobic006G271200--Sobic001G089800 Sobic006G271200--Sobic010G043400 Sobic006G271200--Sobic004G351300 Sobic006G271200--Sobic001G436900 Sobic006G271200--Sobic010G072800 Sobic003G101850--Sobic006G271200 Sobic006G204900 Sobic006G204900 Sobic003G101850--Sobic006G204900 Sobic003G101850--Sobic004G351300 Sobic003G101850--Sobic001G436900 Sobic001G217400 Sobic001G217400 Sobic003G101850--Sobic001G217400 Sobic003G101850--Sobic010G072800 Sobic009G211400 Sobic009G211400 Sobic003G101850--Sobic009G211400 Sobic010G107000 Sobic010G107000 Sobic003G101850--Sobic010G107000 Sobic009G193700 Sobic009G193700 Sobic003G101850--Sobic009G193700 Sobic001G375600 Sobic001G375600 Sobic010G072800--Sobic001G375600 Sobic010G072800--Sobic006G271200 Sobic002G430000 Sobic002G430000 Sobic010G072800--Sobic002G430000 Sobic001G207400 Sobic001G207400 Sobic010G072800--Sobic001G207400 Sobic010G072800--Sobic004G209800 Sobic010G072800--Sobic003G089000 Sobic007G060201 Sobic007G060201 Sobic010G072800--Sobic007G060201 Sobic010G072800--Sobic006G204900 Sobic004G269200 Sobic004G269200 Sobic010G072800--Sobic004G269200 Sobic007G172200 Sobic007G172200 Sobic006G126500--Sobic007G172200 Sobic006G126500--Sobic006G204900 Sobic007G075400 Sobic007G075400 Sobic006G126500--Sobic007G075400 Sobic010G072400 Sobic010G072400 Sobic006G126500--Sobic010G072400 Sobic001G370900 Sobic001G370900 Sobic006G126500--Sobic001G370900 Sobic004G331100 Sobic004G331100 Sobic006G126500--Sobic004G331100 Sobic007G088100 Sobic007G088100 Sobic006G126500--Sobic007G088100 Sobic006G126500--Sobic004G269200 Sobic006G126500--Sobic001G375600 Sobic001G003000--Sobic006G271200 Sobic001G003000--Sobic001G089800 Sobic001G003000--Sobic009G126900 Sobic004G102400 Sobic004G102400 Sobic001G003000--Sobic004G102400 Sobic001G003000--Sobic006G237900 Sobic003G005600 Sobic003G005600 Sobic001G003000--Sobic003G005600 Sobic001G003000--Sobic010G043400 Sobic001G003000--Sobic009G193700 Sobic001G350700 Sobic001G350700 Sobic001G003000--Sobic001G350700 Sobic003G089000--Sobic004G177300 Sobic006G032300 Sobic006G032300 Sobic003G089000--Sobic006G032300 Sobic002G335600 Sobic002G335600 Sobic003G089000--Sobic002G335600 Sobic003G089000--Sobic010G072800 Sobic003G089000--Sobic001G273700 Sobic002G142900 Sobic002G142900 Sobic003G089000--Sobic002G142900 Sobic001G263600 Sobic001G263600 Sobic003G089000--Sobic001G263600 Sobic003G089000--Sobic001G375600 Sobic007G000200 Sobic007G000200 Sobic003G089000--Sobic007G000200
Octagon: transcription factors


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