Gene annotation
Transcriptome id Sobic.006G214200.1
Synonym Sb06g028440, HER1, POP2, GABA-T
Functional annotation aminotransferase, putative, expressed
UniProt C5YG05
Pfam PF00202
Panther DB PTHR11986 PTHR11986:SF90
NCBI CDD -
KEGG Orthology K16871; 4-aminobutyrate---pyruvate transaminase
Gene Ontology GO:0008483; transaminase activity


Orthologs (automatic annotation)
TAIR AT3G22200 : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
RAP-DB (Rice) LOC_Os04g52450.1 : aminotransferase, putative, expressed
MaizeGDB (Corn) Zm00025a057021 , Zm00025a029939 , Zm00025a009804
Brachypodium KQJ95549 , KQJ95550 , KQJ84581
Barley HORVU7Hr1G082330.16 , HORVU7Hr1G082330.5 , HORVU2Hr1G098880.10 , HORVU2Hr1G098880.12 , HORVU7Hr1G082330.19 , HORVU7Hr1G082330.18 , HORVU7Hr1G082330.11 , HORVU7Hr1G082330.10 , HORVU7Hr1G082330.13 , HORVU7Hr1G082330.17 , HORVU7Hr1G082330.9 , HORVU7Hr1G082330.8 , HORVU2Hr1G098880.11 , HORVU7Hr1G082330.4 , HORVU7Hr1G082330.7 , HORVU7Hr1G082330.1 , HORVU7Hr1G082330.2 , HORVU2Hr1G098880.9 , HORVU2Hr1G098880.5 , HORVU2Hr1G098880.4 , HORVU2Hr1G098880.7 , HORVU2Hr1G098880.6 , HORVU2Hr1G098880.1 , HORVU2Hr1G098880.3 , HORVU2Hr1G098880.2
Wheat TraesCS7A02G373400 , TraesCS7B02G253600 , TraesCS7B02G253600 , TraesCS7A02G334200 , TraesCS7A02G334200 , TraesCS2B02G440400 , TraesCS7D02G341900 , TraesCS7B02G246800 , TraesCS7B02G246800 , TraesCS2A02G421400 , TraesCS2D02G418400 , TraesCS2D02G418400 , TraesCS7D02G341900
Populus -


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cDNA sequences
Sobic.006G214200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G257100 YT521-B-like family domain containing protein, expressed -
2 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
3 Sobic.010G107000 phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
4 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
5 Sobic.003G355600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
6 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
7 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
8 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
9 Sobic.003G138200 expressed protein -
10 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
11 Sobic.001G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
12 Sobic.007G186200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@solute carrier family 35 member F1, putative, expressed K15287: solute carrier family 35, member F1/2
13 Sobic.001G350700 Positive regulator of ABA(PubMedID : 30367619)@CAMK_CAMK_like.19 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
14 Sobic.006G125400 steroid nuclear receptor, ligand-binding, putative, expressed -
15 Sobic.003G051600 universal stress protein domain containing protein, putative, expressed -
16 Sobic.009G193700 transmembrane protein 56, putative, expressed -
17 Sobic.007G210500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC transporter, ATP-binding protein, putative, expressed -
18 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
19 Sobic.003G398100 antigen peptide transporter-like 1, chloroplast precursor, putative, expressed -
20 Sobic.006G126500 OsFBX146 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic006G214200 Sobic006G214200 Sobic003G257100 Sobic003G257100 Sobic006G214200--Sobic003G257100 Sobic009G029600 Sobic009G029600 Sobic006G214200--Sobic009G029600 Sobic010G107000 Sobic010G107000 Sobic006G214200--Sobic010G107000 Sobic008G153400 Sobic008G153400 Sobic006G214200--Sobic008G153400 Sobic003G355600 Sobic003G355600 Sobic006G214200--Sobic003G355600 Sobic009G211400 Sobic009G211400 Sobic006G214200--Sobic009G211400 Sobic006G199000 Sobic006G199000 Sobic006G214200--Sobic006G199000 Sobic006G204900 Sobic006G204900 Sobic006G214200--Sobic006G204900 Sobic003G138200 Sobic003G138200 Sobic006G214200--Sobic003G138200 Sobic003G257100--Sobic009G029600 Sobic003G257100--Sobic006G199000 Sobic003G257100--Sobic008G153400 Sobic003G398100 Sobic003G398100 Sobic003G257100--Sobic003G398100 Sobic003G257100--Sobic010G107000 Sobic002G352800 Sobic002G352800 Sobic003G257100--Sobic002G352800 Sobic003G257100--Sobic009G211400 Sobic006G030700 Sobic006G030700 Sobic003G257100--Sobic006G030700 Sobic002G409500 Sobic002G409500 Sobic003G257100--Sobic002G409500 Sobic004G255000 Sobic004G255000 Sobic009G029600--Sobic004G255000 Sobic001G280200 Sobic001G280200 Sobic009G029600--Sobic001G280200 Sobic003G219600 Sobic003G219600 Sobic009G029600--Sobic003G219600 Sobic001G249300 Sobic001G249300 Sobic009G029600--Sobic001G249300 Sobic009G029600--Sobic009G211400 Sobic009G029600--Sobic006G030700 Sobic009G054500 Sobic009G054500 Sobic009G029600--Sobic009G054500 Sobic002G215800 Sobic002G215800 Sobic009G029600--Sobic002G215800 Sobic009G226300 Sobic009G226300 Sobic009G029600--Sobic009G226300 Sobic010G107000--Sobic009G211400 Sobic001G325200 Sobic001G325200 Sobic010G107000--Sobic001G325200 Sobic009G193700 Sobic009G193700 Sobic010G107000--Sobic009G193700 Sobic010G107000--Sobic003G355600 Sobic010G107000--Sobic003G219600 Sobic001G150200 Sobic001G150200 Sobic010G107000--Sobic001G150200 Sobic010G107000--Sobic009G029600 Sobic010G107000--Sobic009G226300 Sobic010G107000--Sobic003G138200 Sobic001G150600 Sobic001G150600 Sobic008G153400--Sobic001G150600 Sobic008G153400--Sobic006G199000 Sobic008G153400--Sobic006G030700 Sobic008G153400--Sobic001G325200 Sobic008G153400--Sobic003G398100 Sobic008G153400--Sobic003G257100 Sobic003G087200 Sobic003G087200 Sobic008G153400--Sobic003G087200 Sobic006G091700 Sobic006G091700 Sobic008G153400--Sobic006G091700 Sobic008G153400--Sobic009G226300 Sobic008G062200 Sobic008G062200 Sobic003G355600--Sobic008G062200 Sobic003G355600--Sobic001G325200 Sobic002G304000 Sobic002G304000 Sobic003G355600--Sobic002G304000 Sobic003G355600--Sobic009G226300 Sobic003G355600--Sobic010G107000 Sobic003G355600--Sobic006G199000 Sobic002G009700 Sobic002G009700 Sobic003G355600--Sobic002G009700 Sobic003G355600--Sobic009G193700 Sobic004G101900 Sobic004G101900 Sobic003G355600--Sobic004G101900 Sobic009G211400--Sobic003G219600 Sobic009G211400--Sobic010G107000 Sobic009G211400--Sobic009G029600 Sobic009G211400--Sobic003G138200 Sobic004G260000 Sobic004G260000 Sobic009G211400--Sobic004G260000 Sobic009G211400--Sobic002G215800 Sobic009G211400--Sobic009G054500 Sobic009G211400--Sobic009G193700 Sobic005G018500 Sobic005G018500 Sobic009G211400--Sobic005G018500 Sobic006G199000--Sobic008G153400 Sobic006G199000--Sobic003G398100 Sobic006G199000--Sobic003G257100 Sobic006G199000--Sobic003G355600 Sobic006G199000--Sobic001G325200 Sobic006G199000--Sobic001G150600 Sobic001G015500 Sobic001G015500 Sobic006G199000--Sobic001G015500 Sobic001G282600 Sobic001G282600 Sobic006G199000--Sobic001G282600 Sobic006G199000--Sobic006G091700 Sobic003G322700 Sobic003G322700 Sobic006G204900--Sobic003G322700 Sobic001G207400 Sobic001G207400 Sobic006G204900--Sobic001G207400 Sobic004G269200 Sobic004G269200 Sobic006G204900--Sobic004G269200 Sobic009G133500 Sobic009G133500 Sobic006G204900--Sobic009G133500 Sobic010G001500 Sobic010G001500 Sobic006G204900--Sobic010G001500 Sobic004G068400 Sobic004G068400 Sobic006G204900--Sobic004G068400 Sobic004G355000 Sobic004G355000 Sobic006G204900--Sobic004G355000 Sobic003G320700 Sobic003G320700 Sobic006G204900--Sobic003G320700 Sobic002G430000 Sobic002G430000 Sobic006G204900--Sobic002G430000 Sobic003G138200--Sobic001G249300 Sobic003G138200--Sobic009G226300 Sobic007G187300 Sobic007G187300 Sobic003G138200--Sobic007G187300 Sobic003G138200--Sobic001G150200 Sobic003G138200--Sobic009G054500 Sobic003G138200--Sobic009G211400 Sobic002G215700 Sobic002G215700 Sobic003G138200--Sobic002G215700 Sobic003G138200--Sobic004G260000 Sobic003G138200--Sobic001G325200
Octagon: transcription factors


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