Gene annotation
Transcriptome id Sobic.004G016000.1
Synonym Sb04g001510, SPMS, SPDS3, ATSPDS3
Functional annotation spermidine synthase, putative, expressed
UniProt C5XSE8
Pfam PF01564
Panther DB PTHR11558 PTHR11558:SF25
NCBI CDD KOG1562; Spermidine synthase
KEGG Orthology K00797; speE, SRM, spermidine synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G53120 : spermidine synthase 3
RAP-DB (Rice) LOC_Os02g15550.2 : spermidine synthase, putative, expressed
MaizeGDB (Corn) Zm00025a018739 , Zm00025a040209 , Zm00025a034434
Brachypodium KQJ94266
Barley HORVU5Hr1G052890.8 , HORVU5Hr1G052890.2 , HORVU5Hr1G052890.1 , HORVU5Hr1G052890.7 , HORVU5Hr1G052890.6 , HORVU5Hr1G052890.5 , HORVU5Hr1G052890.4
Wheat TraesCS5A02G172600 , TraesCS5B02G169900 , TraesCS5B02G169900 , TraesCS5D02G177100
Populus -


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cDNA sequences
Sobic.004G016000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G351300 protein binding protein, putative, expressed -
2 Sobic.004G209800 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
3 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
4 Sobic.002G156000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
5 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
6 Sobic.007G075500 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00972: UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase
7 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
8 Sobic.009G133500 expressed protein -
9 Sobic.003G089000 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
10 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
11 Sobic.001G440800 myb/SANT domain protein, putative, expressed -
12 Sobic.010G273900 "SbeI(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659938)@transmembrane protein, putative, expressed -
13 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
14 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
15 Sobic.008G003700 clathrin heavy chain, putative, expressed K04646: clathrin heavy chain
16 Sobic.004G068400 Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
17 Sobic.001G007100 expressed protein -
18 Sobic.001G056800 GTP binding protein, putative, expressed -
19 Sobic.001G301700 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
20 Sobic.003G257100 YT521-B-like family domain containing protein, expressed -


Gene co-expression network
sample Sobic004G016000 Sobic004G016000 Sobic004G351300 Sobic004G351300 Sobic004G016000--Sobic004G351300 Sobic004G209800 Sobic004G209800 Sobic004G016000--Sobic004G209800 Sobic010G072800 Sobic010G072800 Sobic004G016000--Sobic010G072800 Sobic002G156000 Sobic002G156000 Sobic004G016000--Sobic002G156000 Sobic005G059600 Sobic005G059600 Sobic004G016000--Sobic005G059600 Sobic007G075500 Sobic007G075500 Sobic004G016000--Sobic007G075500 Sobic002G270500 Sobic002G270500 Sobic004G016000--Sobic002G270500 Sobic009G133500 Sobic009G133500 Sobic004G016000--Sobic009G133500 Sobic003G089000 Sobic003G089000 Sobic004G016000--Sobic003G089000 Sobic004G351300--Sobic005G059600 Sobic004G351300--Sobic004G016000 Sobic006G237900 Sobic006G237900 Sobic004G351300--Sobic006G237900 Sobic006G271200 Sobic006G271200 Sobic004G351300--Sobic006G271200 Sobic003G101850 Sobic003G101850 Sobic004G351300--Sobic003G101850 Sobic004G351300--Sobic010G072800 Sobic006G126500 Sobic006G126500 Sobic004G351300--Sobic006G126500 Sobic001G003000 Sobic001G003000 Sobic004G351300--Sobic001G003000 Sobic004G351300--Sobic003G089000 Sobic004G209800--Sobic004G016000 Sobic004G178300 Sobic004G178300 Sobic004G209800--Sobic004G178300 Sobic004G209800--Sobic010G072800 Sobic001G137000 Sobic001G137000 Sobic004G209800--Sobic001G137000 Sobic004G209800--Sobic002G156000 Sobic001G007100 Sobic001G007100 Sobic004G209800--Sobic001G007100 Sobic004G223300 Sobic004G223300 Sobic004G209800--Sobic004G223300 Sobic001G413900 Sobic001G413900 Sobic004G209800--Sobic001G413900 Sobic001G375600 Sobic001G375600 Sobic004G209800--Sobic001G375600 Sobic010G072800--Sobic001G375600 Sobic010G072800--Sobic006G271200 Sobic002G430000 Sobic002G430000 Sobic010G072800--Sobic002G430000 Sobic001G207400 Sobic001G207400 Sobic010G072800--Sobic001G207400 Sobic010G072800--Sobic004G209800 Sobic010G072800--Sobic003G089000 Sobic007G060201 Sobic007G060201 Sobic010G072800--Sobic007G060201 Sobic006G204900 Sobic006G204900 Sobic010G072800--Sobic006G204900 Sobic004G269200 Sobic004G269200 Sobic010G072800--Sobic004G269200 Sobic002G156000--Sobic001G413900 Sobic002G156000--Sobic010G072800 Sobic002G156000--Sobic004G209800 Sobic004G004200 Sobic004G004200 Sobic002G156000--Sobic004G004200 Sobic004G261600 Sobic004G261600 Sobic002G156000--Sobic004G261600 Sobic004G236200 Sobic004G236200 Sobic002G156000--Sobic004G236200 Sobic002G156000--Sobic004G016000 Sobic002G156000--Sobic002G430000 Sobic001G281100 Sobic001G281100 Sobic002G156000--Sobic001G281100 Sobic005G059600--Sobic004G351300 Sobic005G059600--Sobic006G271200 Sobic005G059600--Sobic002G270500 Sobic005G059600--Sobic006G237900 Sobic004G177300 Sobic004G177300 Sobic005G059600--Sobic004G177300 Sobic010G261600 Sobic010G261600 Sobic005G059600--Sobic010G261600 Sobic004G228800 Sobic004G228800 Sobic005G059600--Sobic004G228800 Sobic001G273700 Sobic001G273700 Sobic005G059600--Sobic001G273700 Sobic005G059600--Sobic004G016000 Sobic006G260500 Sobic006G260500 Sobic007G075500--Sobic006G260500 Sobic010G223300 Sobic010G223300 Sobic007G075500--Sobic010G223300 Sobic002G008800 Sobic002G008800 Sobic007G075500--Sobic002G008800 Sobic008G003700 Sobic008G003700 Sobic007G075500--Sobic008G003700 Sobic004G241900 Sobic004G241900 Sobic007G075500--Sobic004G241900 Sobic003G087000 Sobic003G087000 Sobic007G075500--Sobic003G087000 Sobic003G338500 Sobic003G338500 Sobic007G075500--Sobic003G338500 Sobic007G075500--Sobic004G261600 Sobic002G020700 Sobic002G020700 Sobic007G075500--Sobic002G020700 Sobic007G024700 Sobic007G024700 Sobic002G270500--Sobic007G024700 Sobic002G270500--Sobic001G207400 Sobic004G355000 Sobic004G355000 Sobic002G270500--Sobic004G355000 Sobic005G157000 Sobic005G157000 Sobic002G270500--Sobic005G157000 Sobic002G270500--Sobic002G430000 Sobic009G126900 Sobic009G126900 Sobic002G270500--Sobic009G126900 Sobic009G094300 Sobic009G094300 Sobic002G270500--Sobic009G094300 Sobic004G113400 Sobic004G113400 Sobic002G270500--Sobic004G113400 Sobic002G270500--Sobic004G269200 Sobic004G065000 Sobic004G065000 Sobic009G133500--Sobic004G065000 Sobic009G133500--Sobic006G204900 Sobic010G139600 Sobic010G139600 Sobic009G133500--Sobic010G139600 Sobic002G147600 Sobic002G147600 Sobic009G133500--Sobic002G147600 Sobic004G136300 Sobic004G136300 Sobic009G133500--Sobic004G136300 Sobic008G092600 Sobic008G092600 Sobic009G133500--Sobic008G092600 Sobic004G329400 Sobic004G329400 Sobic009G133500--Sobic004G329400 Sobic007G004500 Sobic007G004500 Sobic009G133500--Sobic007G004500 Sobic007G075400 Sobic007G075400 Sobic009G133500--Sobic007G075400 Sobic003G089000--Sobic004G177300 Sobic006G032300 Sobic006G032300 Sobic003G089000--Sobic006G032300 Sobic002G335600 Sobic002G335600 Sobic003G089000--Sobic002G335600 Sobic003G089000--Sobic010G072800 Sobic003G089000--Sobic001G273700 Sobic002G142900 Sobic002G142900 Sobic003G089000--Sobic002G142900 Sobic001G263600 Sobic001G263600 Sobic003G089000--Sobic001G263600 Sobic003G089000--Sobic001G375600 Sobic007G000200 Sobic007G000200 Sobic003G089000--Sobic007G000200
Octagon: transcription factors


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