Gene annotation
Transcriptome id Sobic.010G273900.1,Sobic.010G273900.2
Synonym Sb10g030780, LAZ1
Functional annotation "SbeI(Ortholog in maize:Jiang et al., 2013)" (PubMedID : 31659938)
transmembrane protein, putative, expressed
UniProt C5Z2J0
Pfam PF03619
Panther DB PTHR23423 PTHR23423:SF23
NCBI CDD KOG2641; Predicted seven transmembrane receptor - rhodopsin family
KEGG Orthology -
Gene Ontology GO:0009626; plant-type hypersensitive response


Orthologs (automatic annotation)
TAIR AT4G38360 : Protein of unknown function (DUF300)
RAP-DB (Rice) LOC_Os06g51100.1 : transmembrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a041696 , Zm00025a018539
Brachypodium PNT75307 , PNT75308 , KQK16666 , KQK16667 , KQK16665 , KQK16668 , KQK16669
Barley HORVU7Hr1G121830.2 , HORVU7Hr1G121830.3 , HORVU7Hr1G121830.1 , HORVU7Hr1G121830.4 , HORVU0Hr1G022830.3 , HORVU0Hr1G022830.2 , HORVU0Hr1G022830.1
Wheat TraesCS7B02G472700 , TraesCS7D02G535700 , TraesCS7A02G549400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G426300 actin, putative, expressed K17260: ACTR2, actin-related protein 2
2 Sobic.003G114400 expressed protein K05288: GPI ethanolamine phosphate transferase 3 subunit O
3 Sobic.004G016000 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
4 Sobic.004G209800 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
5 Sobic.002G156000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
6 Sobic.004G241900 OsDegp3 - Putative Deg protease homologue, expressed -
7 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
8 Sobic.005G090300 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
9 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
10 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
11 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
12 Sobic.002G429300 importin subunit beta, putative, expressed -
13 Sobic.004G068400 Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
14 Sobic.003G089000 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
15 Sobic.002G147600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
16 Sobic.006G260500 expressed protein -
17 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
18 Sobic.009G000100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
19 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.008G085300 hhH-GPD superfamily base excision DNA repair protein, expressed -


Gene co-expression network
sample Sobic010G273900 Sobic010G273900 Sobic002G426300 Sobic002G426300 Sobic010G273900--Sobic002G426300 Sobic003G114400 Sobic003G114400 Sobic010G273900--Sobic003G114400 Sobic004G016000 Sobic004G016000 Sobic010G273900--Sobic004G016000 Sobic004G209800 Sobic004G209800 Sobic010G273900--Sobic004G209800 Sobic002G156000 Sobic002G156000 Sobic010G273900--Sobic002G156000 Sobic004G241900 Sobic004G241900 Sobic010G273900--Sobic004G241900 Sobic002G335600 Sobic002G335600 Sobic010G273900--Sobic002G335600 Sobic005G090300 Sobic005G090300 Sobic010G273900--Sobic005G090300 Sobic001G263600 Sobic001G263600 Sobic010G273900--Sobic001G263600 Sobic002G426300--Sobic005G090300 Sobic002G426300--Sobic003G114400 Sobic002G426300--Sobic010G273900 Sobic004G096700 Sobic004G096700 Sobic002G426300--Sobic004G096700 Sobic006G260500 Sobic006G260500 Sobic002G426300--Sobic006G260500 Sobic001G056800 Sobic001G056800 Sobic002G426300--Sobic001G056800 Sobic005G062200 Sobic005G062200 Sobic002G426300--Sobic005G062200 Sobic002G265300 Sobic002G265300 Sobic002G426300--Sobic002G265300 Sobic009G000100 Sobic009G000100 Sobic002G426300--Sobic009G000100 Sobic003G114400--Sobic006G260500 Sobic003G114400--Sobic005G062200 Sobic008G088872 Sobic008G088872 Sobic003G114400--Sobic008G088872 Sobic006G077300 Sobic006G077300 Sobic003G114400--Sobic006G077300 Sobic003G114400--Sobic005G090300 Sobic006G184900 Sobic006G184900 Sobic003G114400--Sobic006G184900 Sobic002G252400 Sobic002G252400 Sobic003G114400--Sobic002G252400 Sobic003G316200 Sobic003G316200 Sobic003G114400--Sobic003G316200 Sobic003G114400--Sobic004G241900 Sobic004G351300 Sobic004G351300 Sobic004G016000--Sobic004G351300 Sobic004G016000--Sobic004G209800 Sobic010G072800 Sobic010G072800 Sobic004G016000--Sobic010G072800 Sobic004G016000--Sobic002G156000 Sobic005G059600 Sobic005G059600 Sobic004G016000--Sobic005G059600 Sobic007G075500 Sobic007G075500 Sobic004G016000--Sobic007G075500 Sobic002G270500 Sobic002G270500 Sobic004G016000--Sobic002G270500 Sobic009G133500 Sobic009G133500 Sobic004G016000--Sobic009G133500 Sobic003G089000 Sobic003G089000 Sobic004G016000--Sobic003G089000 Sobic004G209800--Sobic004G016000 Sobic004G178300 Sobic004G178300 Sobic004G209800--Sobic004G178300 Sobic004G209800--Sobic010G072800 Sobic001G137000 Sobic001G137000 Sobic004G209800--Sobic001G137000 Sobic004G209800--Sobic002G156000 Sobic001G007100 Sobic001G007100 Sobic004G209800--Sobic001G007100 Sobic004G223300 Sobic004G223300 Sobic004G209800--Sobic004G223300 Sobic001G413900 Sobic001G413900 Sobic004G209800--Sobic001G413900 Sobic001G375600 Sobic001G375600 Sobic004G209800--Sobic001G375600 Sobic002G156000--Sobic001G413900 Sobic002G156000--Sobic010G072800 Sobic002G156000--Sobic004G209800 Sobic004G004200 Sobic004G004200 Sobic002G156000--Sobic004G004200 Sobic004G261600 Sobic004G261600 Sobic002G156000--Sobic004G261600 Sobic004G236200 Sobic004G236200 Sobic002G156000--Sobic004G236200 Sobic002G156000--Sobic004G016000 Sobic002G430000 Sobic002G430000 Sobic002G156000--Sobic002G430000 Sobic001G281100 Sobic001G281100 Sobic002G156000--Sobic001G281100 Sobic007G005500 Sobic007G005500 Sobic004G241900--Sobic007G005500 Sobic004G241900--Sobic006G260500 Sobic003G209200 Sobic003G209200 Sobic004G241900--Sobic003G209200 Sobic004G241900--Sobic005G062200 Sobic004G241900--Sobic003G114400 Sobic006G196300 Sobic006G196300 Sobic004G241900--Sobic006G196300 Sobic006G277000 Sobic006G277000 Sobic004G241900--Sobic006G277000 Sobic004G241900--Sobic001G263600 Sobic004G241900--Sobic004G261600 Sobic002G335600--Sobic006G184900 Sobic005G162500 Sobic005G162500 Sobic002G335600--Sobic005G162500 Sobic006G032300 Sobic006G032300 Sobic002G335600--Sobic006G032300 Sobic009G131300 Sobic009G131300 Sobic002G335600--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic002G335600--Sobic002G429300 Sobic001G493700 Sobic001G493700 Sobic002G335600--Sobic001G493700 Sobic002G335600--Sobic008G088872 Sobic004G040500 Sobic004G040500 Sobic002G335600--Sobic004G040500 Sobic004G053500 Sobic004G053500 Sobic002G335600--Sobic004G053500 Sobic005G090300--Sobic001G056800 Sobic005G090300--Sobic005G062200 Sobic005G090300--Sobic003G114400 Sobic005G090300--Sobic001G263600 Sobic005G090300--Sobic004G223300 Sobic002G301100 Sobic002G301100 Sobic005G090300--Sobic002G301100 Sobic002G241600 Sobic002G241600 Sobic005G090300--Sobic002G241600 Sobic005G090300--Sobic008G088872 Sobic003G365100 Sobic003G365100 Sobic005G090300--Sobic003G365100 Sobic001G263600--Sobic008G088872 Sobic001G263600--Sobic002G429300 Sobic002G142900 Sobic002G142900 Sobic001G263600--Sobic002G142900 Sobic001G263600--Sobic005G062200 Sobic008G098900 Sobic008G098900 Sobic001G263600--Sobic008G098900 Sobic002G042600 Sobic002G042600 Sobic001G263600--Sobic002G042600 Sobic001G273700 Sobic001G273700 Sobic001G263600--Sobic001G273700 Sobic003G072200 Sobic003G072200 Sobic001G263600--Sobic003G072200 Sobic001G263600--Sobic009G131300
Octagon: transcription factors


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