Gene annotation
Transcriptome id Sobic.009G000100.2,Sobic.009G000100.1
Synonym ATSIN3, SNL3, Sb09g000200, SIN3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
transcriptional repressor, putative, expressed
UniProt C5YXW8 , A0A1B6P5W7
Pfam PF08295 PF02671 PF16879
Panther DB PTHR12346 PTHR12346:SF8
NCBI CDD KOG4204; Histone deacetylase complex, SIN3 component
KEGG Orthology K11644; paired amphipathic helix protein Sin3a
Gene Ontology GO:0006355; regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT1G24190 : SIN3-like 3
RAP-DB (Rice) LOC_Os05g01020.2 : transcriptional repressor, putative, expressed
MaizeGDB (Corn) Zm00025a041030 , Zm00025a025315 , Zm00025a035427 , Zm00025a025320
Brachypodium KQK02336 , KQK08163 , KQK08164
Barley HORVU1Hr1G000290.6 , HORVU1Hr1G000290.7 , HORVU1Hr1G000290.4 , HORVU1Hr1G000290.5 , HORVU1Hr1G000290.2 , HORVU1Hr1G000290.3 , HORVU1Hr1G000290.1 , HORVU1Hr1G000290.8 , HORVU1Hr1G000290.9 , HORVU1Hr1G000290.14 , HORVU1Hr1G000290.15 , HORVU1Hr1G000290.16 , HORVU1Hr1G000290.17 , HORVU1Hr1G000290.10 , HORVU1Hr1G000290.11 , HORVU1Hr1G000290.12 , HORVU1Hr1G000290.13
Wheat TraesCS3B02G005900 , TraesCSU02G039900 , TraesCSU02G039900 , TraesCS1A02G002700 , TraesCS1B02G002000 , TraesCS1B02G002000 , TraesCS3B02G005900 , TraesCS1D02G004900 , TraesCS1D02G004900 , TraesCS1D02G004900 , TraesCS1D02G004900 , TraesCS1D02G004900 , TraesCS3D02G007600 , TraesCS3D02G007600 , TraesCS3B02G005900
Populus PNT25579 , PNT25578 , PNT25580 , PNT14573 , PNT14572 , PNT14571 , PNT14570 , PNT14576 , PNT14575 , PNT14574


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G426300 actin, putative, expressed K17260: ACTR2, actin-related protein 2
2 Sobic.001G445500 coatomer subunit gamma-1, putative, expressed K17267: coatomer subunit gamma
3 Sobic.006G203300 GPR89A, putative, expressed -
4 Sobic.001G030000 FG-GAP repeat-containing protein, putative, expressed -
5 Sobic.006G239400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11366: USP22_27_51, ubiquitin carboxyl-terminal hydrolase 22/27/51
6 Sobic.001G097900 expressed protein -
7 Sobic.009G166600 nucleoside-triphosphatase, putative, expressed -
8 Sobic.002G340900 ATMIN7, putative, expressed K13462: guanine nucleotide-exchange factor
9 Sobic.002G241600 - -
10 Sobic.001G103300 calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed K05853: P-type Ca2+ transporter type 2A
11 Sobic.003G397900 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed K12667: SWP1, oligosaccharyltransferase complex subunit delta (ribophorin II)
12 Sobic.003G043000 expressed protein -
13 Sobic.003G114400 expressed protein K05288: GPI ethanolamine phosphate transferase 3 subunit O
14 Sobic.005G090300 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
15 Sobic.001G501900 appr-1-p processing enzyme family protein, putative, expressed -
16 Sobic.004G096700 xaa-Pro dipeptidase, putative, expressed K14213: Xaa-Pro dipeptidase
17 Sobic.001G374000 cation efflux family protein, putative, expressed -
18 Sobic.001G056800 GTP binding protein, putative, expressed -
19 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
20 Sobic.004G147500 tetratricopeptide repeat domain containing protein, expressed K09667: protein O-GlcNAc transferase


Gene co-expression network
sample Sobic009G000100 Sobic009G000100 Sobic002G426300 Sobic002G426300 Sobic009G000100--Sobic002G426300 Sobic001G445500 Sobic001G445500 Sobic009G000100--Sobic001G445500 Sobic006G203300 Sobic006G203300 Sobic009G000100--Sobic006G203300 Sobic001G030000 Sobic001G030000 Sobic009G000100--Sobic001G030000 Sobic006G239400 Sobic006G239400 Sobic009G000100--Sobic006G239400 Sobic001G097900 Sobic001G097900 Sobic009G000100--Sobic001G097900 Sobic009G166600 Sobic009G166600 Sobic009G000100--Sobic009G166600 Sobic002G340900 Sobic002G340900 Sobic009G000100--Sobic002G340900 Sobic002G241600 Sobic002G241600 Sobic009G000100--Sobic002G241600 Sobic005G090300 Sobic005G090300 Sobic002G426300--Sobic005G090300 Sobic003G114400 Sobic003G114400 Sobic002G426300--Sobic003G114400 Sobic010G273900 Sobic010G273900 Sobic002G426300--Sobic010G273900 Sobic004G096700 Sobic004G096700 Sobic002G426300--Sobic004G096700 Sobic006G260500 Sobic006G260500 Sobic002G426300--Sobic006G260500 Sobic001G056800 Sobic001G056800 Sobic002G426300--Sobic001G056800 Sobic005G062200 Sobic005G062200 Sobic002G426300--Sobic005G062200 Sobic002G265300 Sobic002G265300 Sobic002G426300--Sobic002G265300 Sobic002G426300--Sobic009G000100 Sobic003G346400 Sobic003G346400 Sobic001G445500--Sobic003G346400 Sobic001G445500--Sobic001G097900 Sobic001G455000 Sobic001G455000 Sobic001G445500--Sobic001G455000 Sobic003G397900 Sobic003G397900 Sobic001G445500--Sobic003G397900 Sobic001G445500--Sobic006G203300 Sobic010G171000 Sobic010G171000 Sobic001G445500--Sobic010G171000 Sobic003G130900 Sobic003G130900 Sobic001G445500--Sobic003G130900 Sobic001G374000 Sobic001G374000 Sobic001G445500--Sobic001G374000 Sobic005G114800 Sobic005G114800 Sobic001G445500--Sobic005G114800 Sobic003G394200 Sobic003G394200 Sobic006G203300--Sobic003G394200 Sobic006G203300--Sobic003G346400 Sobic010G169900 Sobic010G169900 Sobic006G203300--Sobic010G169900 Sobic004G236200 Sobic004G236200 Sobic006G203300--Sobic004G236200 Sobic006G203300--Sobic001G445500 Sobic004G254800 Sobic004G254800 Sobic006G203300--Sobic004G254800 Sobic001G308400 Sobic001G308400 Sobic006G203300--Sobic001G308400 Sobic001G474400 Sobic001G474400 Sobic006G203300--Sobic001G474400 Sobic003G036500 Sobic003G036500 Sobic006G203300--Sobic003G036500 Sobic001G030000--Sobic001G308400 Sobic004G141800 Sobic004G141800 Sobic001G030000--Sobic004G141800 Sobic001G030000--Sobic010G169900 Sobic003G043000 Sobic003G043000 Sobic001G030000--Sobic003G043000 Sobic004G265500 Sobic004G265500 Sobic001G030000--Sobic004G265500 Sobic002G227500 Sobic002G227500 Sobic001G030000--Sobic002G227500 Sobic005G110499 Sobic005G110499 Sobic001G030000--Sobic005G110499 Sobic003G405500 Sobic003G405500 Sobic001G030000--Sobic003G405500 Sobic003G163200 Sobic003G163200 Sobic001G030000--Sobic003G163200 Sobic003G209200 Sobic003G209200 Sobic006G239400--Sobic003G209200 Sobic009G077600 Sobic009G077600 Sobic006G239400--Sobic009G077600 Sobic009G128500 Sobic009G128500 Sobic006G239400--Sobic009G128500 Sobic007G005500 Sobic007G005500 Sobic006G239400--Sobic007G005500 Sobic006G077300 Sobic006G077300 Sobic006G239400--Sobic006G077300 Sobic006G239400--Sobic006G203300 Sobic010G223400 Sobic010G223400 Sobic006G239400--Sobic010G223400 Sobic006G021700 Sobic006G021700 Sobic006G239400--Sobic006G021700 Sobic006G239400--Sobic001G308400 Sobic010G192600 Sobic010G192600 Sobic001G097900--Sobic010G192600 Sobic001G097900--Sobic001G474400 Sobic001G097900--Sobic001G445500 Sobic006G106300 Sobic006G106300 Sobic001G097900--Sobic006G106300 Sobic001G097900--Sobic005G110499 Sobic001G097900--Sobic002G227500 Sobic001G097900--Sobic001G308400 Sobic009G040250 Sobic009G040250 Sobic001G097900--Sobic009G040250 Sobic005G114500 Sobic005G114500 Sobic001G097900--Sobic005G114500 Sobic002G313900 Sobic002G313900 Sobic009G166600--Sobic002G313900 Sobic009G166600--Sobic005G114800 Sobic006G210700 Sobic006G210700 Sobic009G166600--Sobic006G210700 Sobic005G197100 Sobic005G197100 Sobic009G166600--Sobic005G197100 Sobic009G249700 Sobic009G249700 Sobic009G166600--Sobic009G249700 Sobic008G021000 Sobic008G021000 Sobic009G166600--Sobic008G021000 Sobic009G166600--Sobic003G394200 Sobic002G292900 Sobic002G292900 Sobic009G166600--Sobic002G292900 Sobic006G128100 Sobic006G128100 Sobic009G166600--Sobic006G128100 Sobic008G124800 Sobic008G124800 Sobic002G340900--Sobic008G124800 Sobic001G437400 Sobic001G437400 Sobic002G340900--Sobic001G437400 Sobic002G340900--Sobic006G021700 Sobic004G053500 Sobic004G053500 Sobic002G340900--Sobic004G053500 Sobic001G117800 Sobic001G117800 Sobic002G340900--Sobic001G117800 Sobic009G118900 Sobic009G118900 Sobic002G340900--Sobic009G118900 Sobic003G029600 Sobic003G029600 Sobic002G340900--Sobic003G029600 Sobic004G223300 Sobic004G223300 Sobic002G340900--Sobic004G223300 Sobic002G340900--Sobic001G474400 Sobic002G241600--Sobic005G090300 Sobic002G241600--Sobic001G308400 Sobic002G241600--Sobic004G223300 Sobic001G014300 Sobic001G014300 Sobic002G241600--Sobic001G014300 Sobic004G147500 Sobic004G147500 Sobic002G241600--Sobic004G147500 Sobic002G241600--Sobic005G062200 Sobic001G255800 Sobic001G255800 Sobic002G241600--Sobic001G255800 Sobic002G241600--Sobic003G114400 Sobic002G241600--Sobic001G097900
Octagon: transcription factors


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