Gene annotation
Transcriptome id Sobic.001G374000.1,Sobic.001G374000.2
Synonym Sb01g035530
Functional annotation cation efflux family protein, putative, expressed
UniProt A0A1B6QNB7 , A0A1Z5SA44
Pfam PF16916 PF01545
Panther DB PTHR11562 PTHR11562:SF18
NCBI CDD KOG1485; Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0008324cation transmembrane transporter activity GO:0006812cation transport


Orthologs (automatic annotation)
TAIR AT2G47830 : Cation efflux family protein
RAP-DB (Rice) LOC_Os03g22550.1 : cation efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a002424
Brachypodium PNT77427 , KQK21720
Barley HORVU4Hr1G047690.14 , HORVU4Hr1G047690.15 , HORVU4Hr1G047690.16 , HORVU4Hr1G047690.17 , HORVU4Hr1G047690.10 , HORVU4Hr1G047690.11 , HORVU4Hr1G047690.12 , HORVU4Hr1G047690.13 , HORVU4Hr1G047690.18 , HORVU4Hr1G047690.19 , HORVU4Hr1G047690.28 , HORVU4Hr1G047690.21 , HORVU4Hr1G047690.20 , HORVU4Hr1G047690.23 , HORVU4Hr1G047690.22 , HORVU4Hr1G047690.25 , HORVU4Hr1G047690.24 , HORVU4Hr1G047690.27 , HORVU4Hr1G047690.26 , HORVU4Hr1G047690.8 , HORVU4Hr1G047690.9 , HORVU4Hr1G047690.6 , HORVU4Hr1G047690.7 , HORVU4Hr1G047690.4 , HORVU4Hr1G047690.5 , HORVU4Hr1G047690.2 , HORVU4Hr1G047690.3 , HORVU4Hr1G047690.1
Wheat TraesCS4D02G165500 , TraesCS4A02G139400 , TraesCS4D02G165500 , TraesCS4B02G154400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G445500 coatomer subunit gamma-1, putative, expressed K17267: coatomer subunit gamma
2 Sobic.010G171000 phospholipid-transporting ATPase 4, putative, expressed K01530: phospholipid-translocating ATPase
3 Sobic.001G356100 GPI-anchored wall transfer protein 1, putative, expressed K05283: glucosaminylphosphatidylinositol acyltransferase
4 Sobic.010G160300 RNA recognition motif containing protein, putative, expressed -
5 Sobic.009G040250 - -
6 Sobic.001G399700 exonuclease, putative, expressed -
7 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
8 Sobic.002G304700 RFT1, putative, expressed K06316: oligosaccharide translocation protein RFT1
9 Sobic.006G232800 expressed protein K17785: IMMT, FCJ1, mitofilin
10 Sobic.004G193300 phosphatidylinositolglycan class N family protein, expressed K05285: GPI ethanolamine phosphate transferase 1
11 Sobic.001G097900 expressed protein -
12 Sobic.004G263500 DnaK family protein, putative, expressed K09486: hypoxia up-regulated 1
13 Sobic.004G100200 protein phosphatase 1 regulatory subunit SDS22, putative, expressed K17550: PPP1R7, protein phosphatase 1 regulatory subunit 7
14 Sobic.010G133400 pantothenate kinase 4, putative, expressed -
15 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
16 Sobic.002G313100 STE_PAK_Ste20_MST_like.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08838: serine/threonine-protein kinase 24/25/MST4
17 Sobic.009G128500 CBS domain containing protein, expressed K16302: metal transporter CNNM
18 Sobic.001G455000 glycosyl hydrolase, family 31, putative, expressed K05546: mannosyl-oligosaccharide alpha-1,3-glucosidase
19 Sobic.001G501900 appr-1-p processing enzyme family protein, putative, expressed -
20 Sobic.002G301100 PQ loop repeat domain containing protein, expressed K09660: mannose-P-dolichol utilization defect 1


Gene co-expression network
sample Sobic001G374000 Sobic001G374000 Sobic001G445500 Sobic001G445500 Sobic001G374000--Sobic001G445500 Sobic010G171000 Sobic010G171000 Sobic001G374000--Sobic010G171000 Sobic001G356100 Sobic001G356100 Sobic001G374000--Sobic001G356100 Sobic010G160300 Sobic010G160300 Sobic001G374000--Sobic010G160300 Sobic009G040250 Sobic009G040250 Sobic001G374000--Sobic009G040250 Sobic001G399700 Sobic001G399700 Sobic001G374000--Sobic001G399700 Sobic001G114200 Sobic001G114200 Sobic001G374000--Sobic001G114200 Sobic002G304700 Sobic002G304700 Sobic001G374000--Sobic002G304700 Sobic006G232800 Sobic006G232800 Sobic001G374000--Sobic006G232800 Sobic003G346400 Sobic003G346400 Sobic001G445500--Sobic003G346400 Sobic001G097900 Sobic001G097900 Sobic001G445500--Sobic001G097900 Sobic001G455000 Sobic001G455000 Sobic001G445500--Sobic001G455000 Sobic003G397900 Sobic003G397900 Sobic001G445500--Sobic003G397900 Sobic006G203300 Sobic006G203300 Sobic001G445500--Sobic006G203300 Sobic001G445500--Sobic010G171000 Sobic003G130900 Sobic003G130900 Sobic001G445500--Sobic003G130900 Sobic001G445500--Sobic001G374000 Sobic005G114800 Sobic005G114800 Sobic001G445500--Sobic005G114800 Sobic010G171000--Sobic001G445500 Sobic010G065200 Sobic010G065200 Sobic010G171000--Sobic010G065200 Sobic008G019532 Sobic008G019532 Sobic010G171000--Sobic008G019532 Sobic010G171000--Sobic001G455000 Sobic010G171000--Sobic001G374000 Sobic002G117600 Sobic002G117600 Sobic010G171000--Sobic002G117600 Sobic010G171000--Sobic010G160300 Sobic010G171000--Sobic001G114200 Sobic010G171000--Sobic003G346400 Sobic004G263500 Sobic004G263500 Sobic001G356100--Sobic004G263500 Sobic007G118500 Sobic007G118500 Sobic001G356100--Sobic007G118500 Sobic003G394500 Sobic003G394500 Sobic001G356100--Sobic003G394500 Sobic001G356100--Sobic001G455000 Sobic001G356100--Sobic006G232800 Sobic006G060000 Sobic006G060000 Sobic001G356100--Sobic006G060000 Sobic004G350700 Sobic004G350700 Sobic001G356100--Sobic004G350700 Sobic001G356100--Sobic001G114200 Sobic010G133400 Sobic010G133400 Sobic001G356100--Sobic010G133400 Sobic010G160300--Sobic002G304700 Sobic001G280500 Sobic001G280500 Sobic010G160300--Sobic001G280500 Sobic005G063200 Sobic005G063200 Sobic010G160300--Sobic005G063200 Sobic010G160300--Sobic001G114200 Sobic001G501900 Sobic001G501900 Sobic010G160300--Sobic001G501900 Sobic010G160300--Sobic004G350700 Sobic002G007800 Sobic002G007800 Sobic010G160300--Sobic002G007800 Sobic003G117800 Sobic003G117800 Sobic010G160300--Sobic003G117800 Sobic001G149000 Sobic001G149000 Sobic010G160300--Sobic001G149000 Sobic009G040325 Sobic009G040325 Sobic009G040250--Sobic009G040325 Sobic005G087300 Sobic005G087300 Sobic009G040250--Sobic005G087300 Sobic003G021600 Sobic003G021600 Sobic009G040250--Sobic003G021600 Sobic006G012300 Sobic006G012300 Sobic009G040250--Sobic006G012300 Sobic002G147200 Sobic002G147200 Sobic009G040250--Sobic002G147200 Sobic009G040250--Sobic010G160300 Sobic001G043200 Sobic001G043200 Sobic009G040250--Sobic001G043200 Sobic009G040250--Sobic002G304700 Sobic006G191000 Sobic006G191000 Sobic009G040250--Sobic006G191000 Sobic001G465400 Sobic001G465400 Sobic001G399700--Sobic001G465400 Sobic003G160500 Sobic003G160500 Sobic001G399700--Sobic003G160500 Sobic002G355800 Sobic002G355800 Sobic001G399700--Sobic002G355800 Sobic004G096700 Sobic004G096700 Sobic001G399700--Sobic004G096700 Sobic002G301100 Sobic002G301100 Sobic001G399700--Sobic002G301100 Sobic003G302200 Sobic003G302200 Sobic001G399700--Sobic003G302200 Sobic003G193500 Sobic003G193500 Sobic001G399700--Sobic003G193500 Sobic001G399700--Sobic001G356100 Sobic004G000100 Sobic004G000100 Sobic001G399700--Sobic004G000100 Sobic001G114200--Sobic004G350700 Sobic001G114200--Sobic006G060000 Sobic001G114200--Sobic010G160300 Sobic001G114200--Sobic003G117800 Sobic001G114200--Sobic003G394500 Sobic006G210700 Sobic006G210700 Sobic001G114200--Sobic006G210700 Sobic001G490900 Sobic001G490900 Sobic001G114200--Sobic001G490900 Sobic007G030100 Sobic007G030100 Sobic001G114200--Sobic007G030100 Sobic007G218600 Sobic007G218600 Sobic001G114200--Sobic007G218600 Sobic002G304700--Sobic010G160300 Sobic006G156400 Sobic006G156400 Sobic002G304700--Sobic006G156400 Sobic002G304700--Sobic001G280500 Sobic003G385300 Sobic003G385300 Sobic002G304700--Sobic003G385300 Sobic002G304700--Sobic001G149000 Sobic004G077300 Sobic004G077300 Sobic002G304700--Sobic004G077300 Sobic002G304700--Sobic002G007800 Sobic009G106700 Sobic009G106700 Sobic002G304700--Sobic009G106700 Sobic002G304700--Sobic005G063200 Sobic001G378800 Sobic001G378800 Sobic006G232800--Sobic001G378800 Sobic001G385000 Sobic001G385000 Sobic006G232800--Sobic001G385000 Sobic006G232800--Sobic003G394500 Sobic006G232800--Sobic001G149000 Sobic010G086300 Sobic010G086300 Sobic006G232800--Sobic010G086300 Sobic006G232800--Sobic001G280500 Sobic002G313100 Sobic002G313100 Sobic006G232800--Sobic002G313100 Sobic002G392400 Sobic002G392400 Sobic006G232800--Sobic002G392400 Sobic006G265800 Sobic006G265800 Sobic006G232800--Sobic006G265800
Octagon: transcription factors


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