Gene annotation
Transcriptome id Sobic.001G399700.1
Synonym
Functional annotation exonuclease, putative, expressed
UniProt A0A1B6QNR0
Pfam PF00929
Panther DB PTHR13058 PTHR13058:SF19
NCBI CDD KOG4793; Three prime repair exonuclease
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G26940 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os03g18940.1 : exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a002090
Brachypodium KQK22054
Barley HORVU4Hr1G054650.14 , HORVU4Hr1G054650.15 , HORVU4Hr1G054650.16 , HORVU4Hr1G054650.17 , HORVU4Hr1G054650.11 , HORVU4Hr1G054650.13 , HORVU4Hr1G054650.22 , HORVU4Hr1G054650.6 , HORVU4Hr1G054650.7 , HORVU4Hr1G054650.5 , HORVU4Hr1G054650.8 , HORVU4Hr1G054650.9
Wheat TraesCS4B02G187100 , TraesCS4B02G187100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G465400 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed K00658: DLST, 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)
2 Sobic.003G160500 thiamin pyrophosphokinase 1, putative, expressed K00949: thiN, TPK1, thiamine pyrophosphokinase
3 Sobic.002G355800 calcium-binding protein, putative, expressed K08272: CAB39, calcium binding protein 39
4 Sobic.004G096700 xaa-Pro dipeptidase, putative, expressed K14213: Xaa-Pro dipeptidase
5 Sobic.002G301100 PQ loop repeat domain containing protein, expressed K09660: mannose-P-dolichol utilization defect 1
6 Sobic.003G302200 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
7 Sobic.003G193500 CK1_CaseinKinase_1.2 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
8 Sobic.001G356100 GPI-anchored wall transfer protein 1, putative, expressed K05283: glucosaminylphosphatidylinositol acyltransferase
9 Sobic.004G000100 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
10 Sobic.003G058500 expressed protein -
11 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
12 Sobic.004G078700 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
13 Sobic.002G200000 zinc finger, C3HC4 type, putative, expressed -
14 Sobic.008G019532 - -
15 Sobic.001G374000 cation efflux family protein, putative, expressed -
16 Sobic.010G133400 pantothenate kinase 4, putative, expressed -
17 Sobic.006G012700 expressed protein -
18 Sobic.003G261800 expressed protein -
19 Sobic.006G128100 lipase, putative, expressed -
20 Sobic.007G173700 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic001G399700 Sobic001G399700 Sobic001G465400 Sobic001G465400 Sobic001G399700--Sobic001G465400 Sobic003G160500 Sobic003G160500 Sobic001G399700--Sobic003G160500 Sobic002G355800 Sobic002G355800 Sobic001G399700--Sobic002G355800 Sobic004G096700 Sobic004G096700 Sobic001G399700--Sobic004G096700 Sobic002G301100 Sobic002G301100 Sobic001G399700--Sobic002G301100 Sobic003G302200 Sobic003G302200 Sobic001G399700--Sobic003G302200 Sobic003G193500 Sobic003G193500 Sobic001G399700--Sobic003G193500 Sobic001G356100 Sobic001G356100 Sobic001G399700--Sobic001G356100 Sobic004G000100 Sobic004G000100 Sobic001G399700--Sobic004G000100 Sobic003G034900 Sobic003G034900 Sobic001G465400--Sobic003G034900 Sobic006G012700 Sobic006G012700 Sobic001G465400--Sobic006G012700 Sobic001G115700 Sobic001G115700 Sobic001G465400--Sobic001G115700 Sobic001G378200 Sobic001G378200 Sobic001G465400--Sobic001G378200 Sobic004G078700 Sobic004G078700 Sobic001G465400--Sobic004G078700 Sobic001G465400--Sobic004G000100 Sobic001G047600 Sobic001G047600 Sobic001G465400--Sobic001G047600 Sobic001G008100 Sobic001G008100 Sobic001G465400--Sobic001G008100 Sobic004G347600 Sobic004G347600 Sobic001G465400--Sobic004G347600 Sobic003G058500 Sobic003G058500 Sobic003G160500--Sobic003G058500 Sobic002G023100 Sobic002G023100 Sobic003G160500--Sobic002G023100 Sobic003G305900 Sobic003G305900 Sobic003G160500--Sobic003G305900 Sobic003G160500--Sobic001G399700 Sobic001G501900 Sobic001G501900 Sobic003G160500--Sobic001G501900 Sobic001G378800 Sobic001G378800 Sobic003G160500--Sobic001G378800 Sobic006G232800 Sobic006G232800 Sobic003G160500--Sobic006G232800 Sobic010G160300 Sobic010G160300 Sobic003G160500--Sobic010G160300 Sobic010G181600 Sobic010G181600 Sobic003G160500--Sobic010G181600 Sobic010G169900 Sobic010G169900 Sobic002G355800--Sobic010G169900 Sobic007G172700 Sobic007G172700 Sobic002G355800--Sobic007G172700 Sobic006G128100 Sobic006G128100 Sobic002G355800--Sobic006G128100 Sobic010G213500 Sobic010G213500 Sobic002G355800--Sobic010G213500 Sobic001G389200 Sobic001G389200 Sobic002G355800--Sobic001G389200 Sobic001G475300 Sobic001G475300 Sobic002G355800--Sobic001G475300 Sobic002G355800--Sobic003G058500 Sobic009G162100 Sobic009G162100 Sobic002G355800--Sobic009G162100 Sobic005G177700 Sobic005G177700 Sobic002G355800--Sobic005G177700 Sobic002G295700 Sobic002G295700 Sobic004G096700--Sobic002G295700 Sobic004G096700--Sobic001G399700 SobicK043400 SobicK043400 Sobic004G096700--SobicK043400 Sobic004G096700--Sobic002G301100 Sobic009G054600 Sobic009G054600 Sobic004G096700--Sobic009G054600 Sobic010G133400 Sobic010G133400 Sobic004G096700--Sobic010G133400 Sobic004G096700--Sobic001G501900 Sobic004G254800 Sobic004G254800 Sobic004G096700--Sobic004G254800 Sobic010G171000 Sobic010G171000 Sobic004G096700--Sobic010G171000 Sobic006G106300 Sobic006G106300 Sobic002G301100--Sobic006G106300 Sobic001G474400 Sobic001G474400 Sobic002G301100--Sobic001G474400 Sobic006G203300 Sobic006G203300 Sobic002G301100--Sobic006G203300 Sobic005G090300 Sobic005G090300 Sobic002G301100--Sobic005G090300 Sobic006G260500 Sobic006G260500 Sobic002G301100--Sobic006G260500 Sobic002G301100--Sobic001G399700 Sobic002G301100--Sobic004G096700 Sobic001G205100 Sobic001G205100 Sobic002G301100--Sobic001G205100 Sobic007G173700 Sobic007G173700 Sobic002G301100--Sobic007G173700 Sobic003G302200--Sobic003G193500 Sobic002G079000 Sobic002G079000 Sobic003G302200--Sobic002G079000 Sobic001G049400 Sobic001G049400 Sobic003G302200--Sobic001G049400 Sobic003G302200--Sobic010G169900 Sobic003G302200--Sobic002G355800 Sobic003G202600 Sobic003G202600 Sobic003G302200--Sobic003G202600 Sobic009G128500 Sobic009G128500 Sobic003G302200--Sobic009G128500 Sobic004G100200 Sobic004G100200 Sobic003G302200--Sobic004G100200 Sobic006G210700 Sobic006G210700 Sobic003G302200--Sobic006G210700 Sobic003G193500--Sobic003G302200 Sobic003G182300 Sobic003G182300 Sobic003G193500--Sobic003G182300 Sobic003G193500--Sobic009G128500 Sobic007G042900 Sobic007G042900 Sobic003G193500--Sobic007G042900 Sobic006G039400 Sobic006G039400 Sobic003G193500--Sobic006G039400 Sobic001G019800 Sobic001G019800 Sobic003G193500--Sobic001G019800 Sobic003G193500--Sobic010G169900 Sobic003G193500--Sobic002G079000 Sobic009G077600 Sobic009G077600 Sobic003G193500--Sobic009G077600 Sobic004G263500 Sobic004G263500 Sobic001G356100--Sobic004G263500 Sobic007G118500 Sobic007G118500 Sobic001G356100--Sobic007G118500 Sobic003G394500 Sobic003G394500 Sobic001G356100--Sobic003G394500 Sobic001G455000 Sobic001G455000 Sobic001G356100--Sobic001G455000 Sobic001G356100--Sobic006G232800 Sobic006G060000 Sobic006G060000 Sobic001G356100--Sobic006G060000 Sobic004G350700 Sobic004G350700 Sobic001G356100--Sobic004G350700 Sobic001G114200 Sobic001G114200 Sobic001G356100--Sobic001G114200 Sobic001G356100--Sobic010G133400 Sobic004G000100--Sobic007G173700 Sobic001G443200 Sobic001G443200 Sobic004G000100--Sobic001G443200 Sobic004G000100--Sobic001G465400 Sobic001G161700 Sobic001G161700 Sobic004G000100--Sobic001G161700 Sobic008G102600 Sobic008G102600 Sobic004G000100--Sobic008G102600 Sobic004G000100--Sobic004G347600 Sobic001G077900 Sobic001G077900 Sobic004G000100--Sobic001G077900 Sobic001G023100 Sobic001G023100 Sobic004G000100--Sobic001G023100 Sobic002G029300 Sobic002G029300 Sobic004G000100--Sobic002G029300
Octagon: transcription factors


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