Gene annotation
Transcriptome id Sobic.008G019532.1
Synonym -
Functional annotation -
UniProt C5YQR0
Pfam PF00742
Panther DB PTHR21499 PTHR21499:SF33
NCBI CDD KOG0455; Homoserine dehydrogenase
KEGG Orthology -
Gene Ontology GO:0006520; cellular amino acid metabolic process


Orthologs (automatic annotation)
TAIR AT5G21060 : Glyceraldehyde-3-phosphate dehydrogenase-like family protein
RAP-DB (Rice) LOC_Os11g03470.1 : bifunctional aspartokinase/homoserine dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a053733
Brachypodium PNT65523
Barley HORVU5Hr1G045450.3 , HORVU5Hr1G045450.2 , HORVU5Hr1G045450.1 , HORVU5Hr1G045450.4
Wheat TraesCS5B02G141000 , TraesCS5B02G141000 , TraesCS5D02G149900 , TraesCS5A02G142200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G455000 glycosyl hydrolase, family 31, putative, expressed K05546: mannosyl-oligosaccharide alpha-1,3-glucosidase
2 Sobic.002G322400 OsPDIL5-4 protein disulfide isomerase PDIL5-4, expressed -
3 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
4 Sobic.010G171000 phospholipid-transporting ATPase 4, putative, expressed K01530: phospholipid-translocating ATPase
5 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
6 Sobic.001G097900 expressed protein -
7 Sobic.002G076500 protein Kinase-associated protein phosphatase, putative, expressed K01090: protein phosphatase
8 Sobic.001G356100 GPI-anchored wall transfer protein 1, putative, expressed K05283: glucosaminylphosphatidylinositol acyltransferase
9 Sobic.005G114800 protein transport protein, putative, expressed K14007: protein transport protein SEC24
10 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
11 Sobic.007G153500 metal cation transporter, putative, expressed K14713: SLC39A7, KE4, solute carrier family 39 (zinc transporter), member 7
12 Sobic.006G232800 expressed protein K17785: IMMT, FCJ1, mitofilin
13 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
14 Sobic.004G151200 RNA-binding protein-like, putative, expressed -
15 Sobic.005G087300 protein kinase family protein, putative, expressed -
16 Sobic.002G193500 malonyl-CoA decarboxylase, mitochondrial precursor, putative, expressed K01578: malonyl-CoA decarboxylase
17 Sobic.006G198400 phosphoenolpyruvate carboxykinase, putative, expressed -
18 Sobic.001G445500 coatomer subunit gamma-1, putative, expressed K17267: coatomer subunit gamma
19 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
20 Sobic.007G146600 conserved oligomeric Golgi complex component 3, putative, expressed -


Gene co-expression network
sample Sobic008G019532 Sobic008G019532 Sobic001G455000 Sobic001G455000 Sobic008G019532--Sobic001G455000 Sobic002G322400 Sobic002G322400 Sobic008G019532--Sobic002G322400 Sobic010G192600 Sobic010G192600 Sobic008G019532--Sobic010G192600 Sobic010G171000 Sobic010G171000 Sobic008G019532--Sobic010G171000 Sobic001G114200 Sobic001G114200 Sobic008G019532--Sobic001G114200 Sobic001G097900 Sobic001G097900 Sobic008G019532--Sobic001G097900 Sobic002G076500 Sobic002G076500 Sobic008G019532--Sobic002G076500 Sobic001G356100 Sobic001G356100 Sobic008G019532--Sobic001G356100 Sobic005G114800 Sobic005G114800 Sobic008G019532--Sobic005G114800 Sobic004G151200 Sobic004G151200 Sobic001G455000--Sobic004G151200 Sobic003G397900 Sobic003G397900 Sobic001G455000--Sobic003G397900 Sobic007G118500 Sobic007G118500 Sobic001G455000--Sobic007G118500 Sobic001G455000--Sobic008G019532 Sobic001G455000--Sobic001G356100 Sobic003G130900 Sobic003G130900 Sobic001G455000--Sobic003G130900 Sobic001G455000--Sobic001G114200 Sobic001G445500 Sobic001G445500 Sobic001G455000--Sobic001G445500 Sobic003G394500 Sobic003G394500 Sobic001G455000--Sobic003G394500 Sobic002G274700 Sobic002G274700 Sobic002G322400--Sobic002G274700 Sobic007G153500 Sobic007G153500 Sobic002G322400--Sobic007G153500 Sobic002G322400--Sobic001G455000 Sobic004G198300 Sobic004G198300 Sobic002G322400--Sobic004G198300 Sobic006G100266 Sobic006G100266 Sobic002G322400--Sobic006G100266 Sobic002G322400--Sobic008G019532 Sobic005G087300 Sobic005G087300 Sobic002G322400--Sobic005G087300 Sobic002G313100 Sobic002G313100 Sobic002G322400--Sobic002G313100 Sobic002G392400 Sobic002G392400 Sobic002G322400--Sobic002G392400 Sobic010G192600--Sobic001G097900 Sobic001G474400 Sobic001G474400 Sobic010G192600--Sobic001G474400 Sobic001G358500 Sobic001G358500 Sobic010G192600--Sobic001G358500 Sobic010G192600--Sobic007G118500 Sobic008G085700 Sobic008G085700 Sobic010G192600--Sobic008G085700 Sobic005G110499 Sobic005G110499 Sobic010G192600--Sobic005G110499 Sobic002G364900 Sobic002G364900 Sobic010G192600--Sobic002G364900 Sobic001G115700 Sobic001G115700 Sobic010G192600--Sobic001G115700 Sobic003G304400 Sobic003G304400 Sobic010G192600--Sobic003G304400 Sobic010G171000--Sobic001G445500 Sobic010G065200 Sobic010G065200 Sobic010G171000--Sobic010G065200 Sobic010G171000--Sobic008G019532 Sobic010G171000--Sobic001G455000 Sobic001G374000 Sobic001G374000 Sobic010G171000--Sobic001G374000 Sobic002G117600 Sobic002G117600 Sobic010G171000--Sobic002G117600 Sobic010G160300 Sobic010G160300 Sobic010G171000--Sobic010G160300 Sobic010G171000--Sobic001G114200 Sobic003G346400 Sobic003G346400 Sobic010G171000--Sobic003G346400 Sobic004G350700 Sobic004G350700 Sobic001G114200--Sobic004G350700 Sobic006G060000 Sobic006G060000 Sobic001G114200--Sobic006G060000 Sobic001G114200--Sobic010G160300 Sobic003G117800 Sobic003G117800 Sobic001G114200--Sobic003G117800 Sobic001G114200--Sobic003G394500 Sobic006G210700 Sobic006G210700 Sobic001G114200--Sobic006G210700 Sobic001G490900 Sobic001G490900 Sobic001G114200--Sobic001G490900 Sobic007G030100 Sobic007G030100 Sobic001G114200--Sobic007G030100 Sobic007G218600 Sobic007G218600 Sobic001G114200--Sobic007G218600 Sobic001G097900--Sobic010G192600 Sobic001G097900--Sobic001G474400 Sobic001G097900--Sobic001G445500 Sobic006G106300 Sobic006G106300 Sobic001G097900--Sobic006G106300 Sobic001G097900--Sobic005G110499 Sobic002G227500 Sobic002G227500 Sobic001G097900--Sobic002G227500 Sobic001G308400 Sobic001G308400 Sobic001G097900--Sobic001G308400 Sobic009G040250 Sobic009G040250 Sobic001G097900--Sobic009G040250 Sobic005G114500 Sobic005G114500 Sobic001G097900--Sobic005G114500 Sobic002G076500--Sobic007G153500 Sobic008G116700 Sobic008G116700 Sobic002G076500--Sobic008G116700 Sobic003G432800 Sobic003G432800 Sobic002G076500--Sobic003G432800 Sobic002G076500--Sobic002G322400 Sobic002G076500--Sobic006G210700 Sobic002G076500--Sobic008G019532 Sobic002G076500--Sobic005G087300 Sobic004G172500 Sobic004G172500 Sobic002G076500--Sobic004G172500 Sobic001G051400 Sobic001G051400 Sobic002G076500--Sobic001G051400 Sobic004G263500 Sobic004G263500 Sobic001G356100--Sobic004G263500 Sobic001G356100--Sobic007G118500 Sobic001G356100--Sobic003G394500 Sobic001G356100--Sobic001G455000 Sobic006G232800 Sobic006G232800 Sobic001G356100--Sobic006G232800 Sobic001G356100--Sobic006G060000 Sobic001G356100--Sobic004G350700 Sobic001G356100--Sobic001G114200 Sobic010G133400 Sobic010G133400 Sobic001G356100--Sobic010G133400 Sobic003G150900 Sobic003G150900 Sobic005G114800--Sobic003G150900 Sobic009G166600 Sobic009G166600 Sobic005G114800--Sobic009G166600 Sobic005G114800--Sobic005G110499 Sobic001G393700 Sobic001G393700 Sobic005G114800--Sobic001G393700 Sobic005G114800--Sobic001G474400 Sobic001G103300 Sobic001G103300 Sobic005G114800--Sobic001G103300 Sobic003G394200 Sobic003G394200 Sobic005G114800--Sobic003G394200 Sobic005G114800--Sobic001G445500 Sobic006G224800 Sobic006G224800 Sobic005G114800--Sobic006G224800
Octagon: transcription factors


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