Gene annotation
Transcriptome id Sobic.005G114800.2
Synonym CEF, Sb05g016000
Functional annotation protein transport protein, putative, expressed
UniProt A0A1Z5RIK7
Pfam PF04810 PF08033 PF04815 PF04811
Panther DB PTHR13803 PTHR13803:SF4
NCBI CDD -
KEGG Orthology K14007; protein transport protein SEC24
Gene Ontology GO:0008270; zinc ion binding GO:0006888endoplasmic reticulum to Golgi vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT4G32640 : Sec23/Sec24 protein transport family protein
RAP-DB (Rice) LOC_Os11g29200.1 : protein transport protein, putative, expressed
MaizeGDB (Corn) Zm00025a029751 , Zm00025a012665
Brachypodium KQJ86831 , KQJ88530
Barley HORVU4Hr1G016640.3 , HORVU4Hr1G016640.2 , HORVU4Hr1G016640.1 , HORVU4Hr1G016640.4
Wheat TraesCS4D02G103700 , TraesCS5D02G120300 , TraesCS5B02G111600 , TraesCS5B02G111600 , TraesCS5B02G111600 , TraesCS5B02G111600 , TraesCS5B02G111600 , TraesCS4B02G106800 , TraesCS5B02G111600 , TraesCS4A02G202700 , TraesCS5A02G106900
Populus PNT06541 , PNT06540 , PNT06542 , PNT06537 , PNT06538 , PNT06539


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cDNA sequences
Sobic.005G114800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G150900 protein transport protein-related, putative, expressed -
2 Sobic.009G166600 nucleoside-triphosphatase, putative, expressed -
3 Sobic.005G110499 - K14006: protein transport protein SEC23
4 Sobic.001G393700 expressed protein -
5 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
6 Sobic.001G103300 calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed K05853: P-type Ca2+ transporter type 2A
7 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
8 Sobic.001G445500 coatomer subunit gamma-1, putative, expressed K17267: coatomer subunit gamma
9 Sobic.006G224800 expressed protein -
10 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
11 Sobic.008G019532 - -
12 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
13 Sobic.006G203300 GPR89A, putative, expressed -
14 Sobic.005G133800 NEF1, putative, expressed -
15 Sobic.003G397900 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed K12667: SWP1, oligosaccharyltransferase complex subunit delta (ribophorin II)
16 Sobic.003G393200 expressed protein -
17 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
18 Sobic.007G146600 conserved oligomeric Golgi complex component 3, putative, expressed -
19 Sobic.003G189600 M16 domain containing zinc peptidase, putative, expressed -
20 Sobic.006G210700 potassium transporter, putative, expressed -


Gene co-expression network
sample Sobic005G114800 Sobic005G114800 Sobic003G150900 Sobic003G150900 Sobic005G114800--Sobic003G150900 Sobic009G166600 Sobic009G166600 Sobic005G114800--Sobic009G166600 Sobic005G110499 Sobic005G110499 Sobic005G114800--Sobic005G110499 Sobic001G393700 Sobic001G393700 Sobic005G114800--Sobic001G393700 Sobic001G474400 Sobic001G474400 Sobic005G114800--Sobic001G474400 Sobic001G103300 Sobic001G103300 Sobic005G114800--Sobic001G103300 Sobic003G394200 Sobic003G394200 Sobic005G114800--Sobic003G394200 Sobic001G445500 Sobic001G445500 Sobic005G114800--Sobic001G445500 Sobic006G224800 Sobic006G224800 Sobic005G114800--Sobic006G224800 Sobic003G150900--Sobic005G114800 Sobic003G150900--Sobic009G166600 Sobic001G005600 Sobic001G005600 Sobic003G150900--Sobic001G005600 Sobic006G139100 Sobic006G139100 Sobic003G150900--Sobic006G139100 Sobic001G042200 Sobic001G042200 Sobic003G150900--Sobic001G042200 Sobic007G146600 Sobic007G146600 Sobic003G150900--Sobic007G146600 Sobic008G021000 Sobic008G021000 Sobic003G150900--Sobic008G021000 Sobic010G077500 Sobic010G077500 Sobic003G150900--Sobic010G077500 Sobic009G160600 Sobic009G160600 Sobic003G150900--Sobic009G160600 Sobic002G313900 Sobic002G313900 Sobic009G166600--Sobic002G313900 Sobic009G166600--Sobic005G114800 Sobic006G210700 Sobic006G210700 Sobic009G166600--Sobic006G210700 Sobic005G197100 Sobic005G197100 Sobic009G166600--Sobic005G197100 Sobic009G249700 Sobic009G249700 Sobic009G166600--Sobic009G249700 Sobic009G166600--Sobic008G021000 Sobic009G166600--Sobic003G394200 Sobic002G292900 Sobic002G292900 Sobic009G166600--Sobic002G292900 Sobic006G128100 Sobic006G128100 Sobic009G166600--Sobic006G128100 Sobic003G189600 Sobic003G189600 Sobic005G110499--Sobic003G189600 Sobic005G110499--Sobic001G474400 Sobic001G308400 Sobic001G308400 Sobic005G110499--Sobic001G308400 Sobic005G110499--Sobic003G394200 Sobic004G053500 Sobic004G053500 Sobic005G110499--Sobic004G053500 Sobic002G401500 Sobic002G401500 Sobic005G110499--Sobic002G401500 Sobic006G021700 Sobic006G021700 Sobic005G110499--Sobic006G021700 Sobic002G371700 Sobic002G371700 Sobic005G110499--Sobic002G371700 Sobic003G209200 Sobic003G209200 Sobic005G110499--Sobic003G209200 Sobic002G430300 Sobic002G430300 Sobic001G393700--Sobic002G430300 Sobic001G145400 Sobic001G145400 Sobic001G393700--Sobic001G145400 Sobic010G099800 Sobic010G099800 Sobic001G393700--Sobic010G099800 Sobic001G393700--Sobic005G114800 Sobic001G393700--Sobic006G224800 Sobic001G393700--Sobic001G103300 Sobic003G405500 Sobic003G405500 Sobic001G393700--Sobic003G405500 Sobic003G240700 Sobic003G240700 Sobic001G393700--Sobic003G240700 Sobic009G045200 Sobic009G045200 Sobic001G393700--Sobic009G045200 Sobic001G474400--Sobic005G110499 Sobic003G397900 Sobic003G397900 Sobic001G474400--Sobic003G397900 Sobic007G145400 Sobic007G145400 Sobic001G474400--Sobic007G145400 Sobic001G097900 Sobic001G097900 Sobic001G474400--Sobic001G097900 Sobic005G114500 Sobic005G114500 Sobic001G474400--Sobic005G114500 Sobic005G106200 Sobic005G106200 Sobic001G474400--Sobic005G106200 Sobic010G223400 Sobic010G223400 Sobic001G474400--Sobic010G223400 Sobic001G467100 Sobic001G467100 Sobic001G474400--Sobic001G467100 Sobic006G265600 Sobic006G265600 Sobic001G474400--Sobic006G265600 Sobic001G103300--Sobic001G393700 Sobic001G103300--Sobic005G114800 Sobic005G133800 Sobic005G133800 Sobic001G103300--Sobic005G133800 Sobic001G103300--Sobic001G474400 Sobic001G103300--Sobic006G224800 Sobic001G103300--Sobic002G430300 Sobic002G340900 Sobic002G340900 Sobic001G103300--Sobic002G340900 Sobic006G166200 Sobic006G166200 Sobic001G103300--Sobic006G166200 Sobic002G075900 Sobic002G075900 Sobic001G103300--Sobic002G075900 Sobic004G084500 Sobic004G084500 Sobic003G394200--Sobic004G084500 Sobic006G203300 Sobic006G203300 Sobic003G394200--Sobic006G203300 Sobic003G394200--Sobic006G128100 Sobic003G394200--Sobic010G223400 Sobic003G394200--Sobic001G308400 Sobic009G049400 Sobic009G049400 Sobic003G394200--Sobic009G049400 Sobic003G270600 Sobic003G270600 Sobic003G394200--Sobic003G270600 Sobic003G394200--Sobic003G189600 Sobic001G369000 Sobic001G369000 Sobic003G394200--Sobic001G369000 Sobic003G346400 Sobic003G346400 Sobic001G445500--Sobic003G346400 Sobic001G445500--Sobic001G097900 Sobic001G455000 Sobic001G455000 Sobic001G445500--Sobic001G455000 Sobic001G445500--Sobic003G397900 Sobic001G445500--Sobic006G203300 Sobic010G171000 Sobic010G171000 Sobic001G445500--Sobic010G171000 Sobic003G130900 Sobic003G130900 Sobic001G445500--Sobic003G130900 Sobic001G374000 Sobic001G374000 Sobic001G445500--Sobic001G374000 Sobic001G445500--Sobic005G114800 Sobic003G062300 Sobic003G062300 Sobic006G224800--Sobic003G062300 Sobic003G416700 Sobic003G416700 Sobic006G224800--Sobic003G416700 Sobic006G224800--Sobic006G166200 Sobic006G224800--Sobic003G189600 Sobic006G224800--Sobic004G053500 Sobic006G224800--Sobic009G249700 Sobic004G051200 Sobic004G051200 Sobic006G224800--Sobic004G051200 Sobic002G295500 Sobic002G295500 Sobic006G224800--Sobic002G295500 Sobic006G224800--Sobic002G430300
Octagon: transcription factors


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