Gene annotation
Transcriptome id Sobic.004G100200.1
Synonym Sb04g008200
Functional annotation protein phosphatase 1 regulatory subunit SDS22, putative, expressed
UniProt C5XYJ2
Pfam PF12799
Panther DB PTHR24365
NCBI CDD -
KEGG Orthology K17550; PPP1R7, protein phosphatase 1 regulatory subunit 7
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G19680 : Leucine-rich repeat (LRR) family protein
RAP-DB (Rice) LOC_Os02g13640.1 : protein phosphatase 1 regulatory subunit SDS22, putative, expressed
MaizeGDB (Corn) Zm00025a034520
Brachypodium KQJ94137
Barley HORVU6Hr1G041650.2 , HORVU6Hr1G041650.3
Wheat TraesCS6D02G180200 , TraesCS6A02G190900 , TraesCS6B02G222000
Populus -


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cDNA sequences
Sobic.004G100200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G078700 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
2 Sobic.007G005500 ECT protein, putative, expressed -
3 Sobic.006G260500 expressed protein -
4 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
5 Sobic.009G077600 glycosyl hydrolase family 47 domain contain protein, expressed K01230: MAN1A_C, mannosyl-oligosaccharide alpha-1,2-mannosidase
6 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
7 Sobic.003G346400 vacuolar ATP synthase 98 kDa subunit, putative, expressed K02154: ATPeV0A, V-type H+-transporting ATPase subunit a
8 Sobic.004G207900 nucleotide-sugar transporter family protein, putative, expressed -
9 Sobic.004G241900 OsDegp3 - Putative Deg protease homologue, expressed -
10 Sobic.006G077300 expressed protein K17637: EXOC2, exocyst complex component 2
11 Sobic.005G022100 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
12 Sobic.003G302200 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
13 Sobic.009G128500 CBS domain containing protein, expressed K16302: metal transporter CNNM
14 Sobic.002G294100 DOMON domain containing protein, expressed -
15 Sobic.001G389200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
16 Sobic.002G028700 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
17 Sobic.005G177700 transmembrane protein 49, putative, expressed -
18 Sobic.004G254800 heat shock protein DnaJ, putative, expressed K19371: DnaJ homolog subfamily C member 25
19 Sobic.003G036500 fruit protein PKIWI502, putative, expressed -
20 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -


Gene co-expression network
sample Sobic004G100200 Sobic004G100200 Sobic004G078700 Sobic004G078700 Sobic004G100200--Sobic004G078700 Sobic007G005500 Sobic007G005500 Sobic004G100200--Sobic007G005500 Sobic006G260500 Sobic006G260500 Sobic004G100200--Sobic006G260500 Sobic003G209200 Sobic003G209200 Sobic004G100200--Sobic003G209200 Sobic009G077600 Sobic009G077600 Sobic004G100200--Sobic009G077600 Sobic010G169900 Sobic010G169900 Sobic004G100200--Sobic010G169900 Sobic003G346400 Sobic003G346400 Sobic004G100200--Sobic003G346400 Sobic004G207900 Sobic004G207900 Sobic004G100200--Sobic004G207900 Sobic004G241900 Sobic004G241900 Sobic004G100200--Sobic004G241900 Sobic001G389200 Sobic001G389200 Sobic004G078700--Sobic001G389200 Sobic001G465400 Sobic001G465400 Sobic004G078700--Sobic001G465400 Sobic004G078700--Sobic004G100200 Sobic010G223400 Sobic010G223400 Sobic004G078700--Sobic010G223400 Sobic002G355800 Sobic002G355800 Sobic004G078700--Sobic002G355800 Sobic004G254800 Sobic004G254800 Sobic004G078700--Sobic004G254800 Sobic007G118500 Sobic007G118500 Sobic004G078700--Sobic007G118500 Sobic001G378200 Sobic001G378200 Sobic004G078700--Sobic001G378200 Sobic003G316200 Sobic003G316200 Sobic004G078700--Sobic003G316200 Sobic007G005500--Sobic003G209200 Sobic007G005500--Sobic004G241900 Sobic005G062200 Sobic005G062200 Sobic007G005500--Sobic005G062200 Sobic007G005500--Sobic006G260500 Sobic006G021700 Sobic006G021700 Sobic007G005500--Sobic006G021700 Sobic007G005500--Sobic010G169900 Sobic010G000800 Sobic010G000800 Sobic007G005500--Sobic010G000800 Sobic004G261600 Sobic004G261600 Sobic007G005500--Sobic004G261600 Sobic006G077300 Sobic006G077300 Sobic007G005500--Sobic006G077300 Sobic003G114400 Sobic003G114400 Sobic006G260500--Sobic003G114400 Sobic006G260500--Sobic006G077300 Sobic006G260500--Sobic004G241900 Sobic006G260500--Sobic003G209200 Sobic010G223300 Sobic010G223300 Sobic006G260500--Sobic010G223300 Sobic006G260500--Sobic005G062200 Sobic006G260500--Sobic007G005500 Sobic007G075500 Sobic007G075500 Sobic006G260500--Sobic007G075500 Sobic006G260500--Sobic006G021700 Sobic003G209200--Sobic007G005500 Sobic003G209200--Sobic006G260500 Sobic003G209200--Sobic006G077300 Sobic003G209200--Sobic006G021700 Sobic003G209200--Sobic005G062200 Sobic003G209200--Sobic004G241900 Sobic003G209200--Sobic004G261600 Sobic005G110499 Sobic005G110499 Sobic003G209200--Sobic005G110499 Sobic003G209200--Sobic009G077600 Sobic009G077600--Sobic003G209200 Sobic008G055900 Sobic008G055900 Sobic009G077600--Sobic008G055900 Sobic009G077600--Sobic006G260500 Sobic009G077600--Sobic004G207900 Sobic009G077600--Sobic004G100200 Sobic006G239400 Sobic006G239400 Sobic009G077600--Sobic006G239400 Sobic009G077600--Sobic007G005500 Sobic003G050900 Sobic003G050900 Sobic009G077600--Sobic003G050900 Sobic009G077600--Sobic010G223300 Sobic001G308400 Sobic001G308400 Sobic010G169900--Sobic001G308400 Sobic002G079000 Sobic002G079000 Sobic010G169900--Sobic002G079000 Sobic009G128500 Sobic009G128500 Sobic010G169900--Sobic009G128500 Sobic010G169900--Sobic002G355800 Sobic002G227500 Sobic002G227500 Sobic010G169900--Sobic002G227500 Sobic006G128100 Sobic006G128100 Sobic010G169900--Sobic006G128100 Sobic009G194000 Sobic009G194000 Sobic010G169900--Sobic009G194000 Sobic010G169900--Sobic001G389200 Sobic001G490900 Sobic001G490900 Sobic010G169900--Sobic001G490900 Sobic003G346400--Sobic004G254800 Sobic003G346400--Sobic006G021700 Sobic004G060300 Sobic004G060300 Sobic003G346400--Sobic004G060300 Sobic003G394200 Sobic003G394200 Sobic003G346400--Sobic003G394200 Sobic006G203300 Sobic006G203300 Sobic003G346400--Sobic006G203300 Sobic001G445500 Sobic001G445500 Sobic003G346400--Sobic001G445500 Sobic003G346400--Sobic003G209200 Sobic001G161700 Sobic001G161700 Sobic003G346400--Sobic001G161700 Sobic001G012900 Sobic001G012900 Sobic003G346400--Sobic001G012900 Sobic004G207900--Sobic001G161700 Sobic004G207900--Sobic009G077600 Sobic004G207900--Sobic004G100200 Sobic001G023100 Sobic001G023100 Sobic004G207900--Sobic001G023100 Sobic004G207900--Sobic003G346400 Sobic004G025300 Sobic004G025300 Sobic004G207900--Sobic004G025300 Sobic002G141700 Sobic002G141700 Sobic004G207900--Sobic002G141700 Sobic008G129600 Sobic008G129600 Sobic004G207900--Sobic008G129600 Sobic002G294100 Sobic002G294100 Sobic004G207900--Sobic002G294100 Sobic004G241900--Sobic007G005500 Sobic004G241900--Sobic006G260500 Sobic004G241900--Sobic003G209200 Sobic004G241900--Sobic005G062200 Sobic004G241900--Sobic003G114400 Sobic006G196300 Sobic006G196300 Sobic004G241900--Sobic006G196300 Sobic006G277000 Sobic006G277000 Sobic004G241900--Sobic006G277000 Sobic001G263600 Sobic001G263600 Sobic004G241900--Sobic001G263600 Sobic004G241900--Sobic004G261600
Octagon: transcription factors


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