Gene annotation
Transcriptome id Sobic.003G036500.1,Sobic.003G036500.2
Synonym Sb03g003260
Functional annotation fruit protein PKIWI502, putative, expressed
UniProt A0A1W0VVK0 , C5XM03
Pfam PF00175
Panther DB PTHR19370 PTHR19370:SF125
NCBI CDD KOG0534; NADH-cytochrome b-5 reductase
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G15140 : FAD/NAD(P)-binding oxidoreductase
RAP-DB (Rice) LOC_Os01g03050.1 : fruit protein PKIWI502, putative, expressed
MaizeGDB (Corn) Zm00025a023067
Brachypodium KQK02454
Barley HORVU3Hr1G006200.5 , HORVU3Hr1G006200.4 , HORVU3Hr1G006200.1 , HORVU3Hr1G006200.3 , HORVU3Hr1G006200.2
Wheat TraesCS3A02G024600 , TraesCS3B02G020200
Populus -


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cDNA sequences
Sobic.003G036500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G203300 GPR89A, putative, expressed -
2 Sobic.004G254800 heat shock protein DnaJ, putative, expressed K19371: DnaJ homolog subfamily C member 25
3 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
4 Sobic.009G122500 expressed protein -
5 Sobic.003G409900 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
6 Sobic.004G263500 DnaK family protein, putative, expressed K09486: hypoxia up-regulated 1
7 Sobic.009G128500 CBS domain containing protein, expressed K16302: metal transporter CNNM
8 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
9 Sobic.004G100200 protein phosphatase 1 regulatory subunit SDS22, putative, expressed K17550: PPP1R7, protein phosphatase 1 regulatory subunit 7
10 Sobic.001G389200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
11 Sobic.003G346400 vacuolar ATP synthase 98 kDa subunit, putative, expressed K02154: ATPeV0A, V-type H+-transporting ATPase subunit a
12 Sobic.001G490900 growth regulator related protein, putative, expressed -
13 Sobic.003G392550 - -
14 Sobic.004G241900 OsDegp3 - Putative Deg protease homologue, expressed -
15 Sobic.002G294100 DOMON domain containing protein, expressed -
16 Sobic.002G355800 calcium-binding protein, putative, expressed K08272: CAB39, calcium binding protein 39
17 Sobic.002G395500 ATP12 ATPase, putative, expressed K07556: ATPeAF2, ATPAF2, ATP synthase mitochondrial F1 complex assembly factor 2
18 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
19 Sobic.007G056600 expressed protein -
20 Sobic.007G005500 ECT protein, putative, expressed -


Gene co-expression network
sample Sobic003G036500 Sobic003G036500 Sobic006G203300 Sobic006G203300 Sobic003G036500--Sobic006G203300 Sobic004G254800 Sobic004G254800 Sobic003G036500--Sobic004G254800 Sobic010G169900 Sobic010G169900 Sobic003G036500--Sobic010G169900 Sobic009G122500 Sobic009G122500 Sobic003G036500--Sobic009G122500 Sobic003G409900 Sobic003G409900 Sobic003G036500--Sobic003G409900 Sobic004G263500 Sobic004G263500 Sobic003G036500--Sobic004G263500 Sobic009G128500 Sobic009G128500 Sobic003G036500--Sobic009G128500 Sobic006G060000 Sobic006G060000 Sobic003G036500--Sobic006G060000 Sobic004G100200 Sobic004G100200 Sobic003G036500--Sobic004G100200 Sobic003G394200 Sobic003G394200 Sobic006G203300--Sobic003G394200 Sobic003G346400 Sobic003G346400 Sobic006G203300--Sobic003G346400 Sobic006G203300--Sobic010G169900 Sobic004G236200 Sobic004G236200 Sobic006G203300--Sobic004G236200 Sobic001G445500 Sobic001G445500 Sobic006G203300--Sobic001G445500 Sobic006G203300--Sobic004G254800 Sobic001G308400 Sobic001G308400 Sobic006G203300--Sobic001G308400 Sobic001G474400 Sobic001G474400 Sobic006G203300--Sobic001G474400 Sobic006G203300--Sobic003G036500 Sobic004G254800--Sobic003G346400 Sobic001G389200 Sobic001G389200 Sobic004G254800--Sobic001G389200 Sobic004G078700 Sobic004G078700 Sobic004G254800--Sobic004G078700 Sobic004G254800--Sobic003G394200 Sobic001G161700 Sobic001G161700 Sobic004G254800--Sobic001G161700 Sobic004G254800--Sobic009G122500 Sobic004G060300 Sobic004G060300 Sobic004G254800--Sobic004G060300 Sobic002G395500 Sobic002G395500 Sobic004G254800--Sobic002G395500 Sobic003G394500 Sobic003G394500 Sobic004G254800--Sobic003G394500 Sobic010G169900--Sobic001G308400 Sobic002G079000 Sobic002G079000 Sobic010G169900--Sobic002G079000 Sobic010G169900--Sobic009G128500 Sobic002G355800 Sobic002G355800 Sobic010G169900--Sobic002G355800 Sobic002G227500 Sobic002G227500 Sobic010G169900--Sobic002G227500 Sobic006G128100 Sobic006G128100 Sobic010G169900--Sobic006G128100 Sobic009G194000 Sobic009G194000 Sobic010G169900--Sobic009G194000 Sobic010G169900--Sobic001G389200 Sobic001G490900 Sobic001G490900 Sobic010G169900--Sobic001G490900 Sobic001G335000 Sobic001G335000 Sobic009G122500--Sobic001G335000 Sobic009G122500--Sobic004G060300 Sobic001G156900 Sobic001G156900 Sobic009G122500--Sobic001G156900 Sobic004G122900 Sobic004G122900 Sobic009G122500--Sobic004G122900 Sobic010G223400 Sobic010G223400 Sobic009G122500--Sobic010G223400 Sobic009G122500--Sobic001G308400 Sobic009G122500--Sobic003G394200 Sobic009G122500--Sobic001G389200 Sobic001G118000 Sobic001G118000 Sobic009G122500--Sobic001G118000 Sobic006G106300 Sobic006G106300 Sobic003G409900--Sobic006G106300 Sobic003G409900--Sobic001G389200 Sobic003G409900--Sobic006G060000 Sobic003G409900--Sobic009G122500 Sobic003G021600 Sobic003G021600 Sobic003G409900--Sobic003G021600 Sobic003G409900--Sobic010G223400 Sobic003G409900--Sobic004G254800 Sobic001G015400 Sobic001G015400 Sobic003G409900--Sobic001G015400 Sobic003G409900--Sobic009G128500 Sobic001G356100 Sobic001G356100 Sobic004G263500--Sobic001G356100 Sobic004G263500--Sobic006G060000 Sobic004G263500--Sobic003G394500 Sobic008G055500 Sobic008G055500 Sobic004G263500--Sobic008G055500 Sobic001G378800 Sobic001G378800 Sobic004G263500--Sobic001G378800 Sobic010G133400 Sobic010G133400 Sobic004G263500--Sobic010G133400 Sobic004G350700 Sobic004G350700 Sobic004G263500--Sobic004G350700 Sobic007G118500 Sobic007G118500 Sobic004G263500--Sobic007G118500 Sobic004G263500--Sobic001G389200 Sobic009G128500--Sobic010G169900 Sobic009G128500--Sobic001G308400 Sobic003G193500 Sobic003G193500 Sobic009G128500--Sobic003G193500 Sobic009G128500--Sobic009G122500 Sobic009G128500--Sobic002G355800 Sobic009G116900 Sobic009G116900 Sobic009G128500--Sobic009G116900 Sobic009G128500--Sobic010G223400 Sobic009G128500--Sobic003G021600 Sobic009G128500--Sobic001G490900 Sobic006G060000--Sobic008G055500 Sobic006G060000--Sobic004G350700 Sobic007G172700 Sobic007G172700 Sobic006G060000--Sobic007G172700 Sobic001G114200 Sobic001G114200 Sobic006G060000--Sobic001G114200 Sobic006G060000--Sobic003G394500 Sobic006G060000--Sobic001G389200 Sobic006G060000--Sobic004G263500 Sobic003G117800 Sobic003G117800 Sobic006G060000--Sobic003G117800 Sobic006G060000--Sobic001G490900 Sobic004G100200--Sobic004G078700 Sobic007G005500 Sobic007G005500 Sobic004G100200--Sobic007G005500 Sobic006G260500 Sobic006G260500 Sobic004G100200--Sobic006G260500 Sobic003G209200 Sobic003G209200 Sobic004G100200--Sobic003G209200 Sobic009G077600 Sobic009G077600 Sobic004G100200--Sobic009G077600 Sobic004G100200--Sobic010G169900 Sobic004G100200--Sobic003G346400 Sobic004G207900 Sobic004G207900 Sobic004G100200--Sobic004G207900 Sobic004G241900 Sobic004G241900 Sobic004G100200--Sobic004G241900
Octagon: transcription factors


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