Gene annotation
Transcriptome id Sobic.002G395500.1
Synonym Sb02g041060
Functional annotation ATP12 ATPase, putative, expressed
UniProt C5X3Z3
Pfam PF07542
Panther DB PTHR21013
NCBI CDD KOG3015; F1-ATP synthase assembly protein
KEGG Orthology K07556; ATPeAF2, ATPAF2, ATP synthase mitochondrial F1 complex assembly factor 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G40660 : ATP12 protein-related
RAP-DB (Rice) LOC_Os07g44940.1 : ATP12 ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a048960
Brachypodium KQK14948
Barley HORVU1Hr1G037580.1 , HORVU1Hr1G037580.2 , HORVU2Hr1G025320.1 , HORVU2Hr1G025320.2
Wheat TraesCS2A02G142900 , TraesCS2B02G168000
Populus -


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cDNA sequences
Sobic.002G395500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G389200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
2 Sobic.008G168200 expressed protein -
3 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
4 Sobic.007G028500 expressed protein -
5 Sobic.003G190600 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
6 Sobic.006G012700 expressed protein -
7 Sobic.001G047600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
8 Sobic.004G254800 heat shock protein DnaJ, putative, expressed K19371: DnaJ homolog subfamily C member 25
9 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
10 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
11 Sobic.002G355800 calcium-binding protein, putative, expressed K08272: CAB39, calcium binding protein 39
12 Sobic.010G133400 pantothenate kinase 4, putative, expressed -
13 Sobic.004G263500 DnaK family protein, putative, expressed K09486: hypoxia up-regulated 1
14 Sobic.004G186900 RNA recognition motif containing protein, putative, expressed -
15 Sobic.001G378800 fumarate hydratase, mitochondrial precursor, putative, expressed K01679: E4.2.1.2B, fumC, fumarate hydratase, class II
16 Sobic.004G078700 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
17 Sobic.008G171400 phosphonate metabolism protein-related, putative, expressed -
18 Sobic.003G156400 OsPDIL2-2 protein disulfide isomerase PDIL2-2, expressed K09584: PDIA6, protein disulfide-isomerase A6
19 Sobic.004G060300 DNA binding protein, putative, expressed -
20 Sobic.007G172700 ECT5, putative, expressed -


Gene co-expression network
sample Sobic002G395500 Sobic002G395500 Sobic001G389200 Sobic001G389200 Sobic002G395500--Sobic001G389200 Sobic008G168200 Sobic008G168200 Sobic002G395500--Sobic008G168200 Sobic003G394500 Sobic003G394500 Sobic002G395500--Sobic003G394500 Sobic007G028500 Sobic007G028500 Sobic002G395500--Sobic007G028500 Sobic003G190600 Sobic003G190600 Sobic002G395500--Sobic003G190600 Sobic006G012700 Sobic006G012700 Sobic002G395500--Sobic006G012700 Sobic001G047600 Sobic001G047600 Sobic002G395500--Sobic001G047600 Sobic004G254800 Sobic004G254800 Sobic002G395500--Sobic004G254800 Sobic006G060000 Sobic006G060000 Sobic002G395500--Sobic006G060000 Sobic001G389200--Sobic006G060000 Sobic001G389200--Sobic008G168200 Sobic001G389200--Sobic002G395500 Sobic002G355800 Sobic002G355800 Sobic001G389200--Sobic002G355800 Sobic001G389200--Sobic004G254800 Sobic004G078700 Sobic004G078700 Sobic001G389200--Sobic004G078700 Sobic007G172700 Sobic007G172700 Sobic001G389200--Sobic007G172700 Sobic010G169900 Sobic010G169900 Sobic001G389200--Sobic010G169900 Sobic009G122500 Sobic009G122500 Sobic001G389200--Sobic009G122500 Sobic008G168200--Sobic001G389200 Sobic001G205100 Sobic001G205100 Sobic008G168200--Sobic001G205100 Sobic008G168200--Sobic002G395500 Sobic008G168200--Sobic006G060000 Sobic003G156400 Sobic003G156400 Sobic008G168200--Sobic003G156400 Sobic008G168200--Sobic003G394500 Sobic008G168200--Sobic006G012700 Sobic008G171400 Sobic008G171400 Sobic008G168200--Sobic008G171400 Sobic003G409900 Sobic003G409900 Sobic008G168200--Sobic003G409900 Sobic003G117800 Sobic003G117800 Sobic003G394500--Sobic003G117800 Sobic001G385000 Sobic001G385000 Sobic003G394500--Sobic001G385000 Sobic004G350700 Sobic004G350700 Sobic003G394500--Sobic004G350700 Sobic001G378800 Sobic001G378800 Sobic003G394500--Sobic001G378800 Sobic007G118500 Sobic007G118500 Sobic003G394500--Sobic007G118500 Sobic003G190200 Sobic003G190200 Sobic003G394500--Sobic003G190200 Sobic006G232800 Sobic006G232800 Sobic003G394500--Sobic006G232800 Sobic007G030100 Sobic007G030100 Sobic003G394500--Sobic007G030100 Sobic001G424800 Sobic001G424800 Sobic003G394500--Sobic001G424800 Sobic007G028500--Sobic002G395500 Sobic002G238400 Sobic002G238400 Sobic007G028500--Sobic002G238400 Sobic007G028500--Sobic003G156400 Sobic007G028500--Sobic002G355800 Sobic004G186900 Sobic004G186900 Sobic007G028500--Sobic004G186900 Sobic002G200000 Sobic002G200000 Sobic007G028500--Sobic002G200000 Sobic007G028500--Sobic006G012700 Sobic008G087900 Sobic008G087900 Sobic007G028500--Sobic008G087900 Sobic001G465400 Sobic001G465400 Sobic007G028500--Sobic001G465400 Sobic003G190600--Sobic002G395500 Sobic003G190600--Sobic001G389200 Sobic002G023100 Sobic002G023100 Sobic003G190600--Sobic002G023100 Sobic001G378200 Sobic001G378200 Sobic003G190600--Sobic001G378200 Sobic001G485300 Sobic001G485300 Sobic003G190600--Sobic001G485300 Sobic003G190600--Sobic007G118500 Sobic003G190600--Sobic006G012700 Sobic004G060300 Sobic004G060300 Sobic003G190600--Sobic004G060300 Sobic003G190600--Sobic001G047600 Sobic006G012700--Sobic001G465400 Sobic006G012700--Sobic001G378800 Sobic004G093600 Sobic004G093600 Sobic006G012700--Sobic004G093600 Sobic006G012700--Sobic001G047600 Sobic006G012700--Sobic003G156400 Sobic006G012700--Sobic001G378200 Sobic003G034900 Sobic003G034900 Sobic006G012700--Sobic003G034900 Sobic006G012700--Sobic002G395500 Sobic006G012700--Sobic001G389200 Sobic001G047600--Sobic004G093600 Sobic001G047600--Sobic001G378800 Sobic003G058500 Sobic003G058500 Sobic001G047600--Sobic003G058500 Sobic001G047600--Sobic003G034900 Sobic001G047600--Sobic006G012700 SobicK043400 SobicK043400 Sobic001G047600--SobicK043400 Sobic001G047600--Sobic003G156400 Sobic001G047600--Sobic001G465400 Sobic001G047600--Sobic007G118500 Sobic003G346400 Sobic003G346400 Sobic004G254800--Sobic003G346400 Sobic004G254800--Sobic001G389200 Sobic004G254800--Sobic004G078700 Sobic003G394200 Sobic003G394200 Sobic004G254800--Sobic003G394200 Sobic001G161700 Sobic001G161700 Sobic004G254800--Sobic001G161700 Sobic004G254800--Sobic009G122500 Sobic004G254800--Sobic004G060300 Sobic004G254800--Sobic002G395500 Sobic004G254800--Sobic003G394500 Sobic008G055500 Sobic008G055500 Sobic006G060000--Sobic008G055500 Sobic006G060000--Sobic004G350700 Sobic006G060000--Sobic007G172700 Sobic001G114200 Sobic001G114200 Sobic006G060000--Sobic001G114200 Sobic006G060000--Sobic003G394500 Sobic006G060000--Sobic001G389200 Sobic004G263500 Sobic004G263500 Sobic006G060000--Sobic004G263500 Sobic006G060000--Sobic003G117800 Sobic001G490900 Sobic001G490900 Sobic006G060000--Sobic001G490900
Octagon: transcription factors


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