Gene annotation
Transcriptome id Sobic.002G028700.1,Sobic.002G028700.2
Synonym Sb02g002570, SDH1-1
Functional annotation succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed
UniProt A0A1B6Q8Y3 , A0A1B6Q8Y2
Pfam PF02910 PF00890
Panther DB PTHR11632 PTHR11632:SF54
NCBI CDD -
KEGG Orthology K00234; SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT5G66760 : succinate dehydrogenase 1-1
RAP-DB (Rice) LOC_Os07g04240.1 : succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a035832 , Zm00025a049351 , Zm00025a023704 , Zm00025a024436 , Zm00025a000407 , Zm00025a016214 , Zm00025a044974 , Zm00025a017331
Brachypodium KQK20981 , KQK12956
Barley HORVU2Hr1G061040.1 , HORVU2Hr1G061040.3 , HORVU2Hr1G061040.2 , HORVU2Hr1G061040.5 , HORVU2Hr1G061040.4 , HORVU2Hr1G061040.7 , HORVU2Hr1G061040.6 , HORVU2Hr1G061040.9 , HORVU2Hr1G061040.8 , HORVU2Hr1G061080.1 , HORVU0Hr1G013850.4 , HORVU0Hr1G013850.3 , HORVU2Hr1G061040.10 , HORVU2Hr1G061040.13 , HORVU2Hr1G061040.12 , HORVU2Hr1G061040.11 , HORVU0Hr1G013850.1 , HORVU0Hr1G013850.2
Wheat TraesCS5A02G411200 , TraesCS5B02G414900 , TraesCS2A02G255100 , TraesCS2A02G255100 , TraesCS5D02G420100 , TraesCS2D02G255500 , TraesCS2B02G267100
Populus PNT26756 , PNT26757 , PNT26754 , PNT26755 , PNT26752 , PNT26753


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cDNA sequences
Sobic.002G028700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G522100 transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
2 Sobic.004G100200 protein phosphatase 1 regulatory subunit SDS22, putative, expressed K17550: PPP1R7, protein phosphatase 1 regulatory subunit 7
3 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
4 Sobic.009G077600 glycosyl hydrolase family 47 domain contain protein, expressed K01230: MAN1A_C, mannosyl-oligosaccharide alpha-1,2-mannosidase
5 Sobic.007G075500 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00972: UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase
6 Sobic.003G346400 vacuolar ATP synthase 98 kDa subunit, putative, expressed K02154: ATPeV0A, V-type H+-transporting ATPase subunit a
7 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
8 Sobic.006G260500 expressed protein -
9 Sobic.006G077300 expressed protein K17637: EXOC2, exocyst complex component 2
10 Sobic.004G236200 SEC6, putative, expressed K06110: EXOC3, exocyst complex component 3
11 Sobic.007G005500 ECT protein, putative, expressed -
12 Sobic.004G207900 nucleotide-sugar transporter family protein, putative, expressed -
13 Sobic.004G261600 expressed protein -
14 Sobic.001G023100 ACBP4, putative, expressed -
15 Sobic.004G124500 transporter family protein, putative, expressed -
16 Sobic.003G227100 adaptin, putative, expressed -
17 Sobic.001G445500 coatomer subunit gamma-1, putative, expressed K17267: coatomer subunit gamma
18 Sobic.004G241900 OsDegp3 - Putative Deg protease homologue, expressed -
19 Sobic.007G173700 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN


Gene co-expression network
sample Sobic002G028700 Sobic002G028700 Sobic001G522100 Sobic001G522100 Sobic002G028700--Sobic001G522100 Sobic004G100200 Sobic004G100200 Sobic002G028700--Sobic004G100200 Sobic003G209200 Sobic003G209200 Sobic002G028700--Sobic003G209200 Sobic009G077600 Sobic009G077600 Sobic002G028700--Sobic009G077600 Sobic007G075500 Sobic007G075500 Sobic002G028700--Sobic007G075500 Sobic003G346400 Sobic003G346400 Sobic002G028700--Sobic003G346400 Sobic004G228800 Sobic004G228800 Sobic002G028700--Sobic004G228800 Sobic006G260500 Sobic006G260500 Sobic002G028700--Sobic006G260500 Sobic006G077300 Sobic006G077300 Sobic002G028700--Sobic006G077300 Sobic001G522100--Sobic002G028700 Sobic004G261600 Sobic004G261600 Sobic001G522100--Sobic004G261600 Sobic001G399800 Sobic001G399800 Sobic001G522100--Sobic001G399800 Sobic001G522100--Sobic003G209200 Sobic007G180600 Sobic007G180600 Sobic001G522100--Sobic007G180600 Sobic001G251200 Sobic001G251200 Sobic001G522100--Sobic001G251200 Sobic001G522100--Sobic004G228800 Sobic001G522100--Sobic006G077300 Sobic007G005500 Sobic007G005500 Sobic001G522100--Sobic007G005500 Sobic004G078700 Sobic004G078700 Sobic004G100200--Sobic004G078700 Sobic004G100200--Sobic007G005500 Sobic004G100200--Sobic006G260500 Sobic004G100200--Sobic003G209200 Sobic004G100200--Sobic009G077600 Sobic010G169900 Sobic010G169900 Sobic004G100200--Sobic010G169900 Sobic004G100200--Sobic003G346400 Sobic004G207900 Sobic004G207900 Sobic004G100200--Sobic004G207900 Sobic004G241900 Sobic004G241900 Sobic004G100200--Sobic004G241900 Sobic003G209200--Sobic007G005500 Sobic003G209200--Sobic006G260500 Sobic003G209200--Sobic006G077300 Sobic006G021700 Sobic006G021700 Sobic003G209200--Sobic006G021700 Sobic005G062200 Sobic005G062200 Sobic003G209200--Sobic005G062200 Sobic003G209200--Sobic004G241900 Sobic003G209200--Sobic004G261600 Sobic005G110499 Sobic005G110499 Sobic003G209200--Sobic005G110499 Sobic003G209200--Sobic009G077600 Sobic009G077600--Sobic003G209200 Sobic008G055900 Sobic008G055900 Sobic009G077600--Sobic008G055900 Sobic009G077600--Sobic006G260500 Sobic009G077600--Sobic004G207900 Sobic009G077600--Sobic004G100200 Sobic006G239400 Sobic006G239400 Sobic009G077600--Sobic006G239400 Sobic009G077600--Sobic007G005500 Sobic003G050900 Sobic003G050900 Sobic009G077600--Sobic003G050900 Sobic010G223300 Sobic010G223300 Sobic009G077600--Sobic010G223300 Sobic007G075500--Sobic006G260500 Sobic007G075500--Sobic010G223300 Sobic002G008800 Sobic002G008800 Sobic007G075500--Sobic002G008800 Sobic008G003700 Sobic008G003700 Sobic007G075500--Sobic008G003700 Sobic007G075500--Sobic004G241900 Sobic003G087000 Sobic003G087000 Sobic007G075500--Sobic003G087000 Sobic003G338500 Sobic003G338500 Sobic007G075500--Sobic003G338500 Sobic007G075500--Sobic004G261600 Sobic002G020700 Sobic002G020700 Sobic007G075500--Sobic002G020700 Sobic004G254800 Sobic004G254800 Sobic003G346400--Sobic004G254800 Sobic003G346400--Sobic006G021700 Sobic004G060300 Sobic004G060300 Sobic003G346400--Sobic004G060300 Sobic003G394200 Sobic003G394200 Sobic003G346400--Sobic003G394200 Sobic006G203300 Sobic006G203300 Sobic003G346400--Sobic006G203300 Sobic001G445500 Sobic001G445500 Sobic003G346400--Sobic001G445500 Sobic003G346400--Sobic003G209200 Sobic001G161700 Sobic001G161700 Sobic003G346400--Sobic001G161700 Sobic001G012900 Sobic001G012900 Sobic003G346400--Sobic001G012900 Sobic004G228800--Sobic004G261600 Sobic010G261600 Sobic010G261600 Sobic004G228800--Sobic010G261600 Sobic004G323700 Sobic004G323700 Sobic004G228800--Sobic004G323700 Sobic010G278200 Sobic010G278200 Sobic004G228800--Sobic010G278200 Sobic004G236200 Sobic004G236200 Sobic004G228800--Sobic004G236200 Sobic006G131000 Sobic006G131000 Sobic004G228800--Sobic006G131000 Sobic005G177700 Sobic005G177700 Sobic004G228800--Sobic005G177700 Sobic007G056600 Sobic007G056600 Sobic004G228800--Sobic007G056600 Sobic003G126300 Sobic003G126300 Sobic004G228800--Sobic003G126300 Sobic003G114400 Sobic003G114400 Sobic006G260500--Sobic003G114400 Sobic006G260500--Sobic006G077300 Sobic006G260500--Sobic004G241900 Sobic006G260500--Sobic003G209200 Sobic006G260500--Sobic010G223300 Sobic006G260500--Sobic005G062200 Sobic006G260500--Sobic007G005500 Sobic006G260500--Sobic007G075500 Sobic006G260500--Sobic006G021700 Sobic006G077300--Sobic006G260500 Sobic006G077300--Sobic006G021700 Sobic006G077300--Sobic003G209200 Sobic001G056800 Sobic001G056800 Sobic006G077300--Sobic001G056800 Sobic002G401500 Sobic002G401500 Sobic006G077300--Sobic002G401500 Sobic006G077300--Sobic003G114400 Sobic006G077300--Sobic007G005500 Sobic006G077300--Sobic005G062200 Sobic002G042600 Sobic002G042600 Sobic006G077300--Sobic002G042600
Octagon: transcription factors


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