Gene annotation
Transcriptome id Sobic.002G426300.1
Synonym ATARP2, ARP2, WRM, Sb02g043680
Functional annotation actin, putative, expressed
UniProt C5X6C9
Pfam PF00022
Panther DB PTHR11937 PTHR11937:SF37
NCBI CDD -
KEGG Orthology K17260; ACTR2, actin-related protein 2
Gene Ontology GO:0007015; actin filament organization GO:0005885Arp2/3 protein complex GO:0005856cytoskeleton GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT3G27000 : actin related protein 2
RAP-DB (Rice) LOC_Os08g28190.1 : actin, putative, expressed
MaizeGDB (Corn) Zm00025a049233
Brachypodium PNT63624
Barley HORVU4Hr1G007240.11 , HORVU4Hr1G007240.10 , HORVU4Hr1G007240.13 , HORVU4Hr1G007240.12 , HORVU4Hr1G007240.9 , HORVU4Hr1G007240.8 , HORVU4Hr1G007240.1 , HORVU4Hr1G007240.3 , HORVU4Hr1G007240.2 , HORVU4Hr1G007240.5 , HORVU4Hr1G007240.4 , HORVU4Hr1G007240.7 , HORVU4Hr1G007240.6
Wheat TraesCS3B02G401300 , TraesCS3B02G401300 , TraesCS3A02G369400 , TraesCS3A02G369400 , TraesCS3D02G362400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G090300 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
2 Sobic.003G114400 expressed protein K05288: GPI ethanolamine phosphate transferase 3 subunit O
3 Sobic.010G273900 "SbeI(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659938)@transmembrane protein, putative, expressed -
4 Sobic.004G096700 xaa-Pro dipeptidase, putative, expressed K14213: Xaa-Pro dipeptidase
5 Sobic.006G260500 expressed protein -
6 Sobic.001G056800 GTP binding protein, putative, expressed -
7 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
8 Sobic.002G265300 acyl-coenzyme A thioesterase 10, mitochondrial precursor, putative, expressed K17361: acyl-coenzyme A thioesterase 9
9 Sobic.009G000100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
10 Sobic.004G241900 OsDegp3 - Putative Deg protease homologue, expressed -
11 Sobic.003G365100 hydrolase, alpha/beta fold family, putative, expressed -
12 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
13 Sobic.002G301100 PQ loop repeat domain containing protein, expressed K09660: mannose-P-dolichol utilization defect 1
14 Sobic.004G016000 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
15 Sobic.003G316200 transmembrane protein 49, putative, expressed -
16 Sobic.003G156400 OsPDIL2-2 protein disulfide isomerase PDIL2-2, expressed K09584: PDIA6, protein disulfide-isomerase A6
17 Sobic.001G301200 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
18 Sobic.006G077300 expressed protein K17637: EXOC2, exocyst complex component 2
19 Sobic.002G340900 ATMIN7, putative, expressed K13462: guanine nucleotide-exchange factor
20 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11


Gene co-expression network
sample Sobic002G426300 Sobic002G426300 Sobic005G090300 Sobic005G090300 Sobic002G426300--Sobic005G090300 Sobic003G114400 Sobic003G114400 Sobic002G426300--Sobic003G114400 Sobic010G273900 Sobic010G273900 Sobic002G426300--Sobic010G273900 Sobic004G096700 Sobic004G096700 Sobic002G426300--Sobic004G096700 Sobic006G260500 Sobic006G260500 Sobic002G426300--Sobic006G260500 Sobic001G056800 Sobic001G056800 Sobic002G426300--Sobic001G056800 Sobic005G062200 Sobic005G062200 Sobic002G426300--Sobic005G062200 Sobic002G265300 Sobic002G265300 Sobic002G426300--Sobic002G265300 Sobic009G000100 Sobic009G000100 Sobic002G426300--Sobic009G000100 Sobic005G090300--Sobic001G056800 Sobic005G090300--Sobic005G062200 Sobic005G090300--Sobic003G114400 Sobic001G263600 Sobic001G263600 Sobic005G090300--Sobic001G263600 Sobic004G223300 Sobic004G223300 Sobic005G090300--Sobic004G223300 Sobic002G301100 Sobic002G301100 Sobic005G090300--Sobic002G301100 Sobic002G241600 Sobic002G241600 Sobic005G090300--Sobic002G241600 Sobic008G088872 Sobic008G088872 Sobic005G090300--Sobic008G088872 Sobic003G365100 Sobic003G365100 Sobic005G090300--Sobic003G365100 Sobic003G114400--Sobic006G260500 Sobic003G114400--Sobic005G062200 Sobic003G114400--Sobic008G088872 Sobic006G077300 Sobic006G077300 Sobic003G114400--Sobic006G077300 Sobic003G114400--Sobic005G090300 Sobic006G184900 Sobic006G184900 Sobic003G114400--Sobic006G184900 Sobic002G252400 Sobic002G252400 Sobic003G114400--Sobic002G252400 Sobic003G316200 Sobic003G316200 Sobic003G114400--Sobic003G316200 Sobic004G241900 Sobic004G241900 Sobic003G114400--Sobic004G241900 Sobic010G273900--Sobic002G426300 Sobic010G273900--Sobic003G114400 Sobic004G016000 Sobic004G016000 Sobic010G273900--Sobic004G016000 Sobic004G209800 Sobic004G209800 Sobic010G273900--Sobic004G209800 Sobic002G156000 Sobic002G156000 Sobic010G273900--Sobic002G156000 Sobic010G273900--Sobic004G241900 Sobic002G335600 Sobic002G335600 Sobic010G273900--Sobic002G335600 Sobic010G273900--Sobic005G090300 Sobic010G273900--Sobic001G263600 Sobic002G295700 Sobic002G295700 Sobic004G096700--Sobic002G295700 Sobic001G399700 Sobic001G399700 Sobic004G096700--Sobic001G399700 SobicK043400 SobicK043400 Sobic004G096700--SobicK043400 Sobic004G096700--Sobic002G301100 Sobic009G054600 Sobic009G054600 Sobic004G096700--Sobic009G054600 Sobic010G133400 Sobic010G133400 Sobic004G096700--Sobic010G133400 Sobic001G501900 Sobic001G501900 Sobic004G096700--Sobic001G501900 Sobic004G254800 Sobic004G254800 Sobic004G096700--Sobic004G254800 Sobic010G171000 Sobic010G171000 Sobic004G096700--Sobic010G171000 Sobic006G260500--Sobic003G114400 Sobic006G260500--Sobic006G077300 Sobic006G260500--Sobic004G241900 Sobic003G209200 Sobic003G209200 Sobic006G260500--Sobic003G209200 Sobic010G223300 Sobic010G223300 Sobic006G260500--Sobic010G223300 Sobic006G260500--Sobic005G062200 Sobic007G005500 Sobic007G005500 Sobic006G260500--Sobic007G005500 Sobic007G075500 Sobic007G075500 Sobic006G260500--Sobic007G075500 Sobic006G021700 Sobic006G021700 Sobic006G260500--Sobic006G021700 Sobic001G056800--Sobic006G077300 Sobic001G056800--Sobic005G090300 Sobic004G236200 Sobic004G236200 Sobic001G056800--Sobic004G236200 Sobic001G056800--Sobic003G209200 Sobic001G056800--Sobic006G021700 Sobic002G340900 Sobic002G340900 Sobic001G056800--Sobic002G340900 Sobic003G394200 Sobic003G394200 Sobic001G056800--Sobic003G394200 Sobic006G203300 Sobic006G203300 Sobic001G056800--Sobic006G203300 Sobic001G056800--Sobic002G156000 Sobic005G062200--Sobic008G088872 Sobic005G062200--Sobic001G263600 Sobic002G401500 Sobic002G401500 Sobic005G062200--Sobic002G401500 Sobic005G062200--Sobic006G184900 Sobic002G042600 Sobic002G042600 Sobic005G062200--Sobic002G042600 Sobic005G062200--Sobic003G209200 Sobic005G062200--Sobic003G114400 Sobic001G065100 Sobic001G065100 Sobic005G062200--Sobic001G065100 Sobic005G062200--Sobic002G335600 Sobic003G377000 Sobic003G377000 Sobic002G265300--Sobic003G377000 Sobic002G007800 Sobic002G007800 Sobic002G265300--Sobic002G007800 Sobic002G265300--Sobic004G096700 Sobic002G431000 Sobic002G431000 Sobic002G265300--Sobic002G431000 Sobic002G265300--Sobic002G426300 Sobic002G265300--Sobic010G171000 Sobic009G241000 Sobic009G241000 Sobic002G265300--Sobic009G241000 Sobic010G184300 Sobic010G184300 Sobic002G265300--Sobic010G184300 Sobic009G025200 Sobic009G025200 Sobic002G265300--Sobic009G025200 Sobic009G000100--Sobic002G426300 Sobic001G445500 Sobic001G445500 Sobic009G000100--Sobic001G445500 Sobic009G000100--Sobic006G203300 Sobic001G030000 Sobic001G030000 Sobic009G000100--Sobic001G030000 Sobic006G239400 Sobic006G239400 Sobic009G000100--Sobic006G239400 Sobic001G097900 Sobic001G097900 Sobic009G000100--Sobic001G097900 Sobic009G166600 Sobic009G166600 Sobic009G000100--Sobic009G166600 Sobic009G000100--Sobic002G340900 Sobic009G000100--Sobic002G241600
Octagon: transcription factors


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