Gene annotation
Transcriptome id Sobic.004G209800.1
Synonym Sb04g025540
Functional annotation calcium-binding mitochondrial protein anon-60Da, putative, expressed
UniProt C5XX93
Pfam PF07766
Panther DB PTHR14009 PTHR14009:SF12
NCBI CDD KOG1043; Ca2+-binding transmembrane protein LETM1/MRS7
KEGG Orthology K17800; LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G59820 : LETM1-like protein
RAP-DB (Rice) LOC_Os02g39550.1 : calcium-binding mitochondrial protein anon-60Da, putative, expressed
MaizeGDB (Corn) Zm00025a021226 , Zm00025a010812 , Zm00025a037228 , Zm00025a024374
Brachypodium KQK06415 , KQK00271 , KQK00272
Barley HORVU1Hr1G062470.9 , HORVU1Hr1G062470.2 , HORVU1Hr1G062470.3 , HORVU1Hr1G062470.1 , HORVU1Hr1G062470.6 , HORVU1Hr1G062470.7 , HORVU1Hr1G062470.4 , HORVU1Hr1G062470.5 , HORVU1Hr1G062470.8 , HORVU6Hr1G055750.6 , HORVU6Hr1G055750.7 , HORVU6Hr1G055750.4 , HORVU6Hr1G055750.5 , HORVU6Hr1G055750.2 , HORVU6Hr1G055750.3 , HORVU6Hr1G055750.1 , HORVU6Hr1G055750.8
Wheat TraesCS1A02G248400 , TraesCS1A02G248400 , TraesCS6A02G218100 , TraesCS6B02G247500 , TraesCS1D02G247800 , TraesCS6D02G200200 , TraesCS6D02G201300 , TraesCS1B02G259000
Populus PNT17195 , PNT23379 , PNT23378 , PNT23377 , PNT23380


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G016000 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
2 Sobic.004G178300 splicing factor U2AF, putative, expressed -
3 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
4 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
5 Sobic.002G156000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
6 Sobic.001G007100 expressed protein -
7 Sobic.004G223300 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
8 Sobic.001G413900 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
9 Sobic.001G375600 transmembrane protein, putative, expressed -
10 Sobic.008G092600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
11 Sobic.003G279900 bacterial transferase hexapeptide domain containing protein, expressed K00677: UDP-N-acetylglucosamine acyltransferase
12 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
13 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
14 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
15 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
16 Sobic.001G281100 START domain containing protein, expressed -
17 Sobic.004G147500 tetratricopeptide repeat domain containing protein, expressed K09667: protein O-GlcNAc transferase
18 Sobic.004G351300 protein binding protein, putative, expressed -
19 Sobic.008G099800 expressed protein -
20 Sobic.005G090300 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -


Gene co-expression network
sample Sobic004G209800 Sobic004G209800 Sobic004G016000 Sobic004G016000 Sobic004G209800--Sobic004G016000 Sobic004G178300 Sobic004G178300 Sobic004G209800--Sobic004G178300 Sobic010G072800 Sobic010G072800 Sobic004G209800--Sobic010G072800 Sobic001G137000 Sobic001G137000 Sobic004G209800--Sobic001G137000 Sobic002G156000 Sobic002G156000 Sobic004G209800--Sobic002G156000 Sobic001G007100 Sobic001G007100 Sobic004G209800--Sobic001G007100 Sobic004G223300 Sobic004G223300 Sobic004G209800--Sobic004G223300 Sobic001G413900 Sobic001G413900 Sobic004G209800--Sobic001G413900 Sobic001G375600 Sobic001G375600 Sobic004G209800--Sobic001G375600 Sobic004G351300 Sobic004G351300 Sobic004G016000--Sobic004G351300 Sobic004G016000--Sobic004G209800 Sobic004G016000--Sobic010G072800 Sobic004G016000--Sobic002G156000 Sobic005G059600 Sobic005G059600 Sobic004G016000--Sobic005G059600 Sobic007G075500 Sobic007G075500 Sobic004G016000--Sobic007G075500 Sobic002G270500 Sobic002G270500 Sobic004G016000--Sobic002G270500 Sobic009G133500 Sobic009G133500 Sobic004G016000--Sobic009G133500 Sobic003G089000 Sobic003G089000 Sobic004G016000--Sobic003G089000 Sobic004G178300--Sobic001G137000 Sobic004G178300--Sobic004G209800 Sobic004G088501 Sobic004G088501 Sobic004G178300--Sobic004G088501 Sobic002G042600 Sobic002G042600 Sobic004G178300--Sobic002G042600 Sobic006G184900 Sobic006G184900 Sobic004G178300--Sobic006G184900 Sobic001G281100 Sobic001G281100 Sobic004G178300--Sobic001G281100 Sobic010G148932 Sobic010G148932 Sobic004G178300--Sobic010G148932 Sobic010G279800 Sobic010G279800 Sobic004G178300--Sobic010G279800 Sobic003G229500 Sobic003G229500 Sobic004G178300--Sobic003G229500 Sobic010G072800--Sobic001G375600 Sobic006G271200 Sobic006G271200 Sobic010G072800--Sobic006G271200 Sobic002G430000 Sobic002G430000 Sobic010G072800--Sobic002G430000 Sobic001G207400 Sobic001G207400 Sobic010G072800--Sobic001G207400 Sobic010G072800--Sobic004G209800 Sobic010G072800--Sobic003G089000 Sobic007G060201 Sobic007G060201 Sobic010G072800--Sobic007G060201 Sobic006G204900 Sobic006G204900 Sobic010G072800--Sobic006G204900 Sobic004G269200 Sobic004G269200 Sobic010G072800--Sobic004G269200 Sobic008G092600 Sobic008G092600 Sobic001G137000--Sobic008G092600 Sobic007G098500 Sobic007G098500 Sobic001G137000--Sobic007G098500 Sobic003G233400 Sobic003G233400 Sobic001G137000--Sobic003G233400 Sobic003G312100 Sobic003G312100 Sobic001G137000--Sobic003G312100 Sobic001G117200 Sobic001G117200 Sobic001G137000--Sobic001G117200 Sobic002G396500 Sobic002G396500 Sobic001G137000--Sobic002G396500 Sobic001G050600 Sobic001G050600 Sobic001G137000--Sobic001G050600 Sobic008G098900 Sobic008G098900 Sobic001G137000--Sobic008G098900 Sobic008G099800 Sobic008G099800 Sobic001G137000--Sobic008G099800 Sobic002G156000--Sobic001G413900 Sobic002G156000--Sobic010G072800 Sobic002G156000--Sobic004G209800 Sobic004G004200 Sobic004G004200 Sobic002G156000--Sobic004G004200 Sobic004G261600 Sobic004G261600 Sobic002G156000--Sobic004G261600 Sobic004G236200 Sobic004G236200 Sobic002G156000--Sobic004G236200 Sobic002G156000--Sobic004G016000 Sobic002G156000--Sobic002G430000 Sobic002G156000--Sobic001G281100 Sobic001G007100--Sobic001G375600 Sobic009G027300 Sobic009G027300 Sobic001G007100--Sobic009G027300 Sobic002G045600 Sobic002G045600 Sobic001G007100--Sobic002G045600 Sobic007G075400 Sobic007G075400 Sobic001G007100--Sobic007G075400 Sobic001G313700 Sobic001G313700 Sobic001G007100--Sobic001G313700 Sobic001G007100--Sobic010G072800 Sobic010G139600 Sobic010G139600 Sobic001G007100--Sobic010G139600 Sobic004G065000 Sobic004G065000 Sobic001G007100--Sobic004G065000 Sobic001G007100--Sobic001G207400 Sobic004G147500 Sobic004G147500 Sobic004G223300--Sobic004G147500 Sobic002G340900 Sobic002G340900 Sobic004G223300--Sobic002G340900 Sobic001G065100 Sobic001G065100 Sobic004G223300--Sobic001G065100 Sobic004G223300--Sobic002G042600 Sobic008G124800 Sobic008G124800 Sobic004G223300--Sobic008G124800 Sobic005G062200 Sobic005G062200 Sobic004G223300--Sobic005G062200 Sobic003G039000 Sobic003G039000 Sobic004G223300--Sobic003G039000 Sobic001G382600 Sobic001G382600 Sobic004G223300--Sobic001G382600 Sobic002G401500 Sobic002G401500 Sobic004G223300--Sobic002G401500 Sobic001G534800 Sobic001G534800 Sobic001G413900--Sobic001G534800 Sobic001G413900--Sobic002G156000 Sobic001G413900--Sobic001G281100 Sobic004G002100 Sobic004G002100 Sobic001G413900--Sobic004G002100 Sobic001G413900--Sobic004G236200 Sobic001G413900--Sobic004G209800 Sobic001G065000 Sobic001G065000 Sobic001G413900--Sobic001G065000 Sobic001G056800 Sobic001G056800 Sobic001G413900--Sobic001G056800 Sobic001G413900--Sobic003G229500 Sobic001G375600--Sobic001G007100 Sobic001G375600--Sobic010G072800 Sobic009G165400 Sobic009G165400 Sobic001G375600--Sobic009G165400 Sobic001G273700 Sobic001G273700 Sobic001G375600--Sobic001G273700 Sobic007G088100 Sobic007G088100 Sobic001G375600--Sobic007G088100 Sobic001G375600--Sobic003G089000 Sobic001G375600--Sobic004G269200 Sobic003G259100 Sobic003G259100 Sobic001G375600--Sobic003G259100 Sobic001G375600--Sobic006G204900
Octagon: transcription factors


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