Gene annotation
Transcriptome id Sobic.004G178300.2,Sobic.004G178300.1
Synonym
Functional annotation splicing factor U2AF, putative, expressed
UniProt A0A1Z5RNF9 , A0A1Z5RN03
Pfam PF13893 PF00642
Panther DB PTHR12620 PTHR12620:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT1G10320 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os02g35150.1 : splicing factor U2AF, putative, expressed
MaizeGDB (Corn) Zm00025a020690
Brachypodium PNT68835
Barley HORVU5Hr1G103280.22 , HORVU5Hr1G103280.19 , HORVU5Hr1G103280.18 , HORVU5Hr1G103280.13 , HORVU5Hr1G103280.12 , HORVU5Hr1G103280.11 , HORVU5Hr1G103280.10 , HORVU5Hr1G103280.17 , HORVU5Hr1G103280.16 , HORVU5Hr1G103280.15 , HORVU5Hr1G103280.14 , HORVU5Hr1G103280.21 , HORVU5Hr1G103280.27 , HORVU5Hr1G103280.9 , HORVU5Hr1G103280.8 , HORVU5Hr1G103280.3 , HORVU5Hr1G103280.2 , HORVU5Hr1G103280.1 , HORVU5Hr1G103280.7 , HORVU5Hr1G103280.6 , HORVU5Hr1G103280.5 , HORVU5Hr1G103280.4 , HORVU5Hr1G103280.23 , HORVU5Hr1G103280.20 , HORVU5Hr1G103280.26 , HORVU5Hr1G103280.24 , HORVU5Hr1G103280.25
Wheat TraesCS5D02G431900 , TraesCS5A02G423300 , TraesCS5A02G423300 , TraesCS5A02G423300 , TraesCS5B02G425300 , TraesCS5B02G425300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
2 Sobic.004G209800 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
3 Sobic.004G088501 - K17302: COPB2, coatomer subunit beta'
4 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
5 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
6 Sobic.001G281100 START domain containing protein, expressed -
7 Sobic.010G148932 - -
8 Sobic.010G279800 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
9 Sobic.003G229500 ZOS12-01 - C2H2 zinc finger protein, expressed -
10 Sobic.001G375600 transmembrane protein, putative, expressed -
11 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
12 Sobic.009G020500 expressed protein -
13 Sobic.009G126300 RING E3 ligase protein, putative, expressed K16279: E3 ubiquitin-protein ligase KEG
14 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
15 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
16 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
17 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
18 Sobic.002G179400 DNA binding protein, putative, expressed -
19 Sobic.005G090300 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
20 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin


Gene co-expression network
sample Sobic004G178300 Sobic004G178300 Sobic001G137000 Sobic001G137000 Sobic004G178300--Sobic001G137000 Sobic004G209800 Sobic004G209800 Sobic004G178300--Sobic004G209800 Sobic004G088501 Sobic004G088501 Sobic004G178300--Sobic004G088501 Sobic002G042600 Sobic002G042600 Sobic004G178300--Sobic002G042600 Sobic006G184900 Sobic006G184900 Sobic004G178300--Sobic006G184900 Sobic001G281100 Sobic001G281100 Sobic004G178300--Sobic001G281100 Sobic010G148932 Sobic010G148932 Sobic004G178300--Sobic010G148932 Sobic010G279800 Sobic010G279800 Sobic004G178300--Sobic010G279800 Sobic003G229500 Sobic003G229500 Sobic004G178300--Sobic003G229500 Sobic008G092600 Sobic008G092600 Sobic001G137000--Sobic008G092600 Sobic007G098500 Sobic007G098500 Sobic001G137000--Sobic007G098500 Sobic003G233400 Sobic003G233400 Sobic001G137000--Sobic003G233400 Sobic003G312100 Sobic003G312100 Sobic001G137000--Sobic003G312100 Sobic001G117200 Sobic001G117200 Sobic001G137000--Sobic001G117200 Sobic002G396500 Sobic002G396500 Sobic001G137000--Sobic002G396500 Sobic001G050600 Sobic001G050600 Sobic001G137000--Sobic001G050600 Sobic008G098900 Sobic008G098900 Sobic001G137000--Sobic008G098900 Sobic008G099800 Sobic008G099800 Sobic001G137000--Sobic008G099800 Sobic004G016000 Sobic004G016000 Sobic004G209800--Sobic004G016000 Sobic004G209800--Sobic004G178300 Sobic010G072800 Sobic010G072800 Sobic004G209800--Sobic010G072800 Sobic004G209800--Sobic001G137000 Sobic002G156000 Sobic002G156000 Sobic004G209800--Sobic002G156000 Sobic001G007100 Sobic001G007100 Sobic004G209800--Sobic001G007100 Sobic004G223300 Sobic004G223300 Sobic004G209800--Sobic004G223300 Sobic001G413900 Sobic001G413900 Sobic004G209800--Sobic001G413900 Sobic001G375600 Sobic001G375600 Sobic004G209800--Sobic001G375600 Sobic004G088450 Sobic004G088450 Sobic004G088501--Sobic004G088450 Sobic009G126300 Sobic009G126300 Sobic004G088501--Sobic009G126300 Sobic003G337300 Sobic003G337300 Sobic004G088501--Sobic003G337300 Sobic004G088501--Sobic004G178300 Sobic006G034500 Sobic006G034500 Sobic004G088501--Sobic006G034500 Sobic001G493700 Sobic001G493700 Sobic004G088501--Sobic001G493700 Sobic006G131000 Sobic006G131000 Sobic004G088501--Sobic006G131000 Sobic004G088501--Sobic001G281100 Sobic004G322400 Sobic004G322400 Sobic004G088501--Sobic004G322400 Sobic001G065100 Sobic001G065100 Sobic002G042600--Sobic001G065100 Sobic002G042600--Sobic006G184900 Sobic002G042600--Sobic008G098900 Sobic002G401500 Sobic002G401500 Sobic002G042600--Sobic002G401500 Sobic002G179400 Sobic002G179400 Sobic002G042600--Sobic002G179400 Sobic002G042600--Sobic004G322400 Sobic002G429300 Sobic002G429300 Sobic002G042600--Sobic002G429300 Sobic008G088872 Sobic008G088872 Sobic002G042600--Sobic008G088872 Sobic001G370900 Sobic001G370900 Sobic002G042600--Sobic001G370900 Sobic002G335600 Sobic002G335600 Sobic006G184900--Sobic002G335600 Sobic006G184900--Sobic002G429300 Sobic006G184900--Sobic008G088872 Sobic006G184900--Sobic002G042600 Sobic006G184900--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic006G184900--Sobic009G131300 Sobic006G184900--Sobic001G493700 Sobic006G184900--Sobic002G179400 Sobic005G062200 Sobic005G062200 Sobic006G184900--Sobic005G062200 Sobic001G534800 Sobic001G534800 Sobic001G281100--Sobic001G534800 Sobic004G004300 Sobic004G004300 Sobic001G281100--Sobic004G004300 Sobic001G065000 Sobic001G065000 Sobic001G281100--Sobic001G065000 Sobic005G026200 Sobic005G026200 Sobic001G281100--Sobic005G026200 Sobic001G281100--Sobic008G099800 Sobic001G281100--Sobic003G229500 Sobic006G012500 Sobic006G012500 Sobic001G281100--Sobic006G012500 Sobic004G072100 Sobic004G072100 Sobic001G281100--Sobic004G072100 Sobic010G275500 Sobic010G275500 Sobic001G281100--Sobic010G275500 Sobic010G148932--Sobic003G312100 Sobic010G148932--Sobic002G042600 Sobic010G148932--Sobic003G229500 Sobic002G397500 Sobic002G397500 Sobic010G148932--Sobic002G397500 Sobic010G148932--Sobic008G098900 Sobic010G148932--Sobic001G117200 Sobic010G148932--Sobic001G137000 Sobic007G062800 Sobic007G062800 Sobic010G148932--Sobic007G062800 Sobic001G457900 Sobic001G457900 Sobic010G148932--Sobic001G457900 Sobic010G279800--Sobic010G148932 Sobic010G279800--Sobic002G042600 Sobic010G279800--Sobic008G098900 Sobic002G430000 Sobic002G430000 Sobic010G279800--Sobic002G430000 Sobic010G279800--Sobic001G117200 Sobic010G279800--Sobic003G229500 Sobic010G279800--Sobic001G281100 Sobic006G040500 Sobic006G040500 Sobic010G279800--Sobic006G040500 Sobic004G135400 Sobic004G135400 Sobic010G279800--Sobic004G135400 Sobic008G132600 Sobic008G132600 Sobic003G229500--Sobic008G132600 Sobic003G229500--Sobic007G062800 Sobic003G101400 Sobic003G101400 Sobic003G229500--Sobic003G101400 Sobic001G196500 Sobic001G196500 Sobic003G229500--Sobic001G196500 Sobic003G229500--Sobic002G042600 Sobic001G363500 Sobic001G363500 Sobic003G229500--Sobic001G363500 Sobic001G347500 Sobic001G347500 Sobic003G229500--Sobic001G347500 Sobic003G072200 Sobic003G072200 Sobic003G229500--Sobic003G072200 Sobic001G540400 Sobic001G540400 Sobic003G229500--Sobic001G540400
Octagon: transcription factors


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