Gene annotation
Transcriptome id Sobic.004G088501.3,Sobic.004G088501.2,Sobic.004G088501.1
Synonym -
Functional annotation -
UniProt A0A194YNJ6 , A0A194YNK5
Pfam PF00400 PF04053
Panther DB PTHR19876 PTHR19876:SF6
NCBI CDD -
KEGG Orthology K17302; COPB2, coatomer subunit beta'
Gene Ontology GO:0005515; protein binding GO:0016192vesicle-mediated transport GO:0006886intracellular protein transport GO:0005198structural molecule activity


Orthologs (automatic annotation)
TAIR AT1G79990 : Coatomer, beta\' subunit,structural molecules
RAP-DB (Rice) LOC_Os02g11830.2 : coatomer subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a051254 , Zm00025a034592 , Zm00025a020227
Brachypodium KQJ93991 , KQJ93992
Barley -
Wheat TraesCS4A02G388200 , TraesCS4A02G388200 , TraesCS4A02G388200 , TraesCS4A02G388200 , TraesCS6A02G179300 , TraesCS6D02G165800 , TraesCS6D02G165800 , TraesCS6D02G165800 , TraesCS6A02G179300 , TraesCS6A02G179300 , TraesCS6B02G206500 , TraesCS6B02G206500 , TraesCS6B02G206500 , TraesCS6B02G206500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G088450 - K17302: COPB2, coatomer subunit beta'
2 Sobic.009G126300 RING E3 ligase protein, putative, expressed K16279: E3 ubiquitin-protein ligase KEG
3 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
4 Sobic.004G178300 splicing factor U2AF, putative, expressed -
5 Sobic.006G034500 elongation factor Tu, putative, expressed K03267: ERF3, peptide chain release factor subunit 3
6 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
7 Sobic.006G131000 expressed protein K11968: ariadne-1
8 Sobic.001G281100 START domain containing protein, expressed -
9 Sobic.004G322400 WD40-like, putative, expressed -
10 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
11 Sobic.003G093800 - K03254: translation initiation factor 3 subunit A
12 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
13 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
14 Sobic.003G252100 DDT, putative, expressed -
15 Sobic.002G179400 DNA binding protein, putative, expressed -
16 Sobic.010G275500 EF hand family protein, putative, expressed -
17 Sobic.002G299700 ATGRIP/GRIP, putative, expressed -
18 Sobic.009G020500 expressed protein -
19 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
20 Sobic.004G004300 expressed protein -


Gene co-expression network
sample Sobic004G088501 Sobic004G088501 Sobic004G088450 Sobic004G088450 Sobic004G088501--Sobic004G088450 Sobic009G126300 Sobic009G126300 Sobic004G088501--Sobic009G126300 Sobic003G337300 Sobic003G337300 Sobic004G088501--Sobic003G337300 Sobic004G178300 Sobic004G178300 Sobic004G088501--Sobic004G178300 Sobic006G034500 Sobic006G034500 Sobic004G088501--Sobic006G034500 Sobic001G493700 Sobic001G493700 Sobic004G088501--Sobic001G493700 Sobic006G131000 Sobic006G131000 Sobic004G088501--Sobic006G131000 Sobic001G281100 Sobic001G281100 Sobic004G088501--Sobic001G281100 Sobic004G322400 Sobic004G322400 Sobic004G088501--Sobic004G322400 Sobic004G088450--Sobic004G088501 Sobic004G004300 Sobic004G004300 Sobic004G088450--Sobic004G004300 Sobic004G088450--Sobic001G281100 Sobic004G358400 Sobic004G358400 Sobic004G088450--Sobic004G358400 Sobic004G351100 Sobic004G351100 Sobic004G088450--Sobic004G351100 Sobic001G251200 Sobic001G251200 Sobic004G088450--Sobic001G251200 Sobic003G252100 Sobic003G252100 Sobic004G088450--Sobic003G252100 Sobic001G441400 Sobic001G441400 Sobic004G088450--Sobic001G441400 Sobic003G427600 Sobic003G427600 Sobic004G088450--Sobic003G427600 Sobic009G182600 Sobic009G182600 Sobic009G126300--Sobic009G182600 Sobic009G126300--Sobic001G493700 Sobic007G168300 Sobic007G168300 Sobic009G126300--Sobic007G168300 Sobic001G137000 Sobic001G137000 Sobic009G126300--Sobic001G137000 Sobic002G179400 Sobic002G179400 Sobic009G126300--Sobic002G179400 Sobic009G126300--Sobic004G088501 Sobic009G255600 Sobic009G255600 Sobic009G126300--Sobic009G255600 Sobic001G117200 Sobic001G117200 Sobic009G126300--Sobic001G117200 Sobic002G388500 Sobic002G388500 Sobic009G126300--Sobic002G388500 Sobic003G104000 Sobic003G104000 Sobic003G337300--Sobic003G104000 Sobic010G004100 Sobic010G004100 Sobic003G337300--Sobic010G004100 Sobic002G137400 Sobic002G137400 Sobic003G337300--Sobic002G137400 Sobic004G039600 Sobic004G039600 Sobic003G337300--Sobic004G039600 Sobic003G337300--Sobic006G131000 Sobic004G344901 Sobic004G344901 Sobic003G337300--Sobic004G344901 Sobic003G337300--Sobic004G322400 Sobic003G332500 Sobic003G332500 Sobic003G337300--Sobic003G332500 Sobic001G415300 Sobic001G415300 Sobic003G337300--Sobic001G415300 Sobic004G178300--Sobic001G137000 Sobic004G209800 Sobic004G209800 Sobic004G178300--Sobic004G209800 Sobic004G178300--Sobic004G088501 Sobic002G042600 Sobic002G042600 Sobic004G178300--Sobic002G042600 Sobic006G184900 Sobic006G184900 Sobic004G178300--Sobic006G184900 Sobic004G178300--Sobic001G281100 Sobic010G148932 Sobic010G148932 Sobic004G178300--Sobic010G148932 Sobic010G279800 Sobic010G279800 Sobic004G178300--Sobic010G279800 Sobic003G229500 Sobic003G229500 Sobic004G178300--Sobic003G229500 Sobic004G145000 Sobic004G145000 Sobic006G034500--Sobic004G145000 Sobic001G440800 Sobic001G440800 Sobic006G034500--Sobic001G440800 Sobic006G034500--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic006G034500--Sobic002G256700 Sobic009G201700 Sobic009G201700 Sobic006G034500--Sobic009G201700 Sobic008G055900 Sobic008G055900 Sobic006G034500--Sobic008G055900 Sobic002G142900 Sobic002G142900 Sobic006G034500--Sobic002G142900 Sobic006G034500--Sobic004G088501 Sobic004G261600 Sobic004G261600 Sobic006G034500--Sobic004G261600 Sobic001G493700--Sobic002G179400 Sobic005G162500 Sobic005G162500 Sobic001G493700--Sobic005G162500 Sobic001G493700--Sobic006G184900 Sobic002G133300 Sobic002G133300 Sobic001G493700--Sobic002G133300 Sobic009G131300 Sobic009G131300 Sobic001G493700--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic001G493700--Sobic002G429300 Sobic001G493700--Sobic002G042600 Sobic002G335600 Sobic002G335600 Sobic001G493700--Sobic002G335600 Sobic006G088200 Sobic006G088200 Sobic001G493700--Sobic006G088200 Sobic007G218000 Sobic007G218000 Sobic006G131000--Sobic007G218000 Sobic007G132100 Sobic007G132100 Sobic006G131000--Sobic007G132100 Sobic006G163800 Sobic006G163800 Sobic006G131000--Sobic006G163800 Sobic006G131000--Sobic004G039600 Sobic001G096000 Sobic001G096000 Sobic006G131000--Sobic001G096000 Sobic006G174850 Sobic006G174850 Sobic006G131000--Sobic006G174850 Sobic010G275500 Sobic010G275500 Sobic006G131000--Sobic010G275500 Sobic001G369000 Sobic001G369000 Sobic006G131000--Sobic001G369000 Sobic004G178200 Sobic004G178200 Sobic006G131000--Sobic004G178200 Sobic001G534800 Sobic001G534800 Sobic001G281100--Sobic001G534800 Sobic001G281100--Sobic004G004300 Sobic001G065000 Sobic001G065000 Sobic001G281100--Sobic001G065000 Sobic005G026200 Sobic005G026200 Sobic001G281100--Sobic005G026200 Sobic008G099800 Sobic008G099800 Sobic001G281100--Sobic008G099800 Sobic001G281100--Sobic003G229500 Sobic006G012500 Sobic006G012500 Sobic001G281100--Sobic006G012500 Sobic004G072100 Sobic004G072100 Sobic001G281100--Sobic004G072100 Sobic001G281100--Sobic010G275500 Sobic002G401500 Sobic002G401500 Sobic004G322400--Sobic002G401500 Sobic004G322400--Sobic002G042600 Sobic004G322400--Sobic009G131300 Sobic010G223100 Sobic010G223100 Sobic004G322400--Sobic010G223100 Sobic008G124800 Sobic008G124800 Sobic004G322400--Sobic008G124800 Sobic004G322400--Sobic002G179400 Sobic010G059500 Sobic010G059500 Sobic004G322400--Sobic010G059500 Sobic001G065100 Sobic001G065100 Sobic004G322400--Sobic001G065100 Sobic004G322400--Sobic010G275500
Octagon: transcription factors


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