Gene annotation
Transcriptome id Sobic.004G088450.2,Sobic.004G088450.1
Synonym -
Functional annotation -
UniProt A0A1Z5RLR5 , A0A1Z5RML0
Pfam PF00400 PF04053
Panther DB PTHR19876 PTHR19876:SF6
NCBI CDD -
KEGG Orthology K17302; COPB2, coatomer subunit beta'
Gene Ontology GO:0005515; protein binding GO:0016192vesicle-mediated transport GO:0006886intracellular protein transport GO:0005198structural molecule activity


Orthologs (automatic annotation)
TAIR AT1G79990 : Coatomer, beta\' subunit,structural molecules
RAP-DB (Rice) LOC_Os02g11830.2 : coatomer subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a051254 , Zm00025a034592 , Zm00025a020227
Brachypodium KQJ93991 , KQJ93992
Barley -
Wheat TraesCS6A02G179300 , TraesCS6D02G165800 , TraesCS6D02G165800 , TraesCS6D02G165800 , TraesCS6A02G130600 , TraesCS6A02G179300 , TraesCS6A02G179300 , TraesCS6B02G206500 , TraesCS6B02G206500 , TraesCS6B02G206500 , TraesCS6B02G206500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G088501 - K17302: COPB2, coatomer subunit beta'
2 Sobic.004G004300 expressed protein -
3 Sobic.001G281100 START domain containing protein, expressed -
4 Sobic.004G358400 callose synthase-like enzyme(PubMedID : 25311645)@1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
5 Sobic.004G351100 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
6 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
7 Sobic.003G252100 DDT, putative, expressed -
8 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
9 Sobic.003G427600 villin protein, putative, expressed -
10 Sobic.004G344901 - K10357: myosin V
11 Sobic.004G091100 nuclear protein ZAP-related, putative, expressed K17602: YLP motif-containing protein 1
12 Sobic.004G322400 WD40-like, putative, expressed -
13 Sobic.010G118950 - -
14 Sobic.010G275500 EF hand family protein, putative, expressed -
15 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
16 Sobic.006G131000 expressed protein K11968: ariadne-1
17 Sobic.006G034500 elongation factor Tu, putative, expressed K03267: ERF3, peptide chain release factor subunit 3
18 Sobic.002G275600 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
19 Sobic.005G026200 HEAT repeat family protein, putative, expressed K11886: proteasome component ECM29
20 Sobic.003G093800 - K03254: translation initiation factor 3 subunit A


Gene co-expression network
sample Sobic004G088450 Sobic004G088450 Sobic004G088501 Sobic004G088501 Sobic004G088450--Sobic004G088501 Sobic004G004300 Sobic004G004300 Sobic004G088450--Sobic004G004300 Sobic001G281100 Sobic001G281100 Sobic004G088450--Sobic001G281100 Sobic004G358400 Sobic004G358400 Sobic004G088450--Sobic004G358400 Sobic004G351100 Sobic004G351100 Sobic004G088450--Sobic004G351100 Sobic001G251200 Sobic001G251200 Sobic004G088450--Sobic001G251200 Sobic003G252100 Sobic003G252100 Sobic004G088450--Sobic003G252100 Sobic001G441400 Sobic001G441400 Sobic004G088450--Sobic001G441400 Sobic003G427600 Sobic003G427600 Sobic004G088450--Sobic003G427600 Sobic004G088501--Sobic004G088450 Sobic009G126300 Sobic009G126300 Sobic004G088501--Sobic009G126300 Sobic003G337300 Sobic003G337300 Sobic004G088501--Sobic003G337300 Sobic004G178300 Sobic004G178300 Sobic004G088501--Sobic004G178300 Sobic006G034500 Sobic006G034500 Sobic004G088501--Sobic006G034500 Sobic001G493700 Sobic001G493700 Sobic004G088501--Sobic001G493700 Sobic006G131000 Sobic006G131000 Sobic004G088501--Sobic006G131000 Sobic004G088501--Sobic001G281100 Sobic004G322400 Sobic004G322400 Sobic004G088501--Sobic004G322400 Sobic004G004300--Sobic001G281100 Sobic005G026200 Sobic005G026200 Sobic004G004300--Sobic005G026200 Sobic001G534800 Sobic001G534800 Sobic004G004300--Sobic001G534800 Sobic006G126100 Sobic006G126100 Sobic004G004300--Sobic006G126100 Sobic001G117200 Sobic001G117200 Sobic004G004300--Sobic001G117200 Sobic004G004200 Sobic004G004200 Sobic004G004300--Sobic004G004200 Sobic001G415300 Sobic001G415300 Sobic004G004300--Sobic001G415300 Sobic010G275500 Sobic010G275500 Sobic004G004300--Sobic010G275500 Sobic005G003300 Sobic005G003300 Sobic004G004300--Sobic005G003300 Sobic001G281100--Sobic001G534800 Sobic001G281100--Sobic004G004300 Sobic001G065000 Sobic001G065000 Sobic001G281100--Sobic001G065000 Sobic001G281100--Sobic005G026200 Sobic008G099800 Sobic008G099800 Sobic001G281100--Sobic008G099800 Sobic003G229500 Sobic003G229500 Sobic001G281100--Sobic003G229500 Sobic006G012500 Sobic006G012500 Sobic001G281100--Sobic006G012500 Sobic004G072100 Sobic004G072100 Sobic001G281100--Sobic004G072100 Sobic001G281100--Sobic010G275500 Sobic004G358400--Sobic004G004300 Sobic004G358400--Sobic005G026200 Sobic004G358400--Sobic001G281100 Sobic004G358400--Sobic010G275500 Sobic004G358400--Sobic001G534800 Sobic003G331400 Sobic003G331400 Sobic004G358400--Sobic003G331400 Sobic004G344901 Sobic004G344901 Sobic004G358400--Sobic004G344901 Sobic001G196500 Sobic001G196500 Sobic004G358400--Sobic001G196500 Sobic004G358400--Sobic001G251200 Sobic010G118950 Sobic010G118950 Sobic004G351100--Sobic010G118950 Sobic010G276900 Sobic010G276900 Sobic004G351100--Sobic010G276900 Sobic004G351100--Sobic001G281100 Sobic004G351100--Sobic001G441400 Sobic007G207000 Sobic007G207000 Sobic004G351100--Sobic007G207000 Sobic004G091100 Sobic004G091100 Sobic004G351100--Sobic004G091100 Sobic010G116600 Sobic010G116600 Sobic004G351100--Sobic010G116600 Sobic004G351100--Sobic004G004300 Sobic001G050200 Sobic001G050200 Sobic004G351100--Sobic001G050200 Sobic003G362600 Sobic003G362600 Sobic001G251200--Sobic003G362600 Sobic001G128300 Sobic001G128300 Sobic001G251200--Sobic001G128300 Sobic009G165700 Sobic009G165700 Sobic001G251200--Sobic009G165700 Sobic001G251200--Sobic004G004300 Sobic004G261600 Sobic004G261600 Sobic001G251200--Sobic004G261600 Sobic001G451400 Sobic001G451400 Sobic001G251200--Sobic001G451400 Sobic001G043100 Sobic001G043100 Sobic001G251200--Sobic001G043100 Sobic001G251200--Sobic006G131000 Sobic001G251200--Sobic001G281100 Sobic004G314000 Sobic004G314000 Sobic003G252100--Sobic004G314000 Sobic004G065100 Sobic004G065100 Sobic003G252100--Sobic004G065100 Sobic003G401600 Sobic003G401600 Sobic003G252100--Sobic003G401600 Sobic002G299700 Sobic002G299700 Sobic003G252100--Sobic002G299700 Sobic004G023000 Sobic004G023000 Sobic003G252100--Sobic004G023000 Sobic005G008800 Sobic005G008800 Sobic003G252100--Sobic005G008800 Sobic004G242400 Sobic004G242400 Sobic003G252100--Sobic004G242400 Sobic002G211800 Sobic002G211800 Sobic003G252100--Sobic002G211800 Sobic010G139000 Sobic010G139000 Sobic003G252100--Sobic010G139000 Sobic001G441400--Sobic001G451400 Sobic003G404500 Sobic003G404500 Sobic001G441400--Sobic003G404500 Sobic006G252900 Sobic006G252900 Sobic001G441400--Sobic006G252900 Sobic005G027400 Sobic005G027400 Sobic001G441400--Sobic005G027400 Sobic001G441400--Sobic009G165700 Sobic001G363500 Sobic001G363500 Sobic001G441400--Sobic001G363500 Sobic003G102400 Sobic003G102400 Sobic001G441400--Sobic003G102400 Sobic001G441400--Sobic002G299700 Sobic001G441400--Sobic004G351100 Sobic009G229600 Sobic009G229600 Sobic003G427600--Sobic009G229600 Sobic003G427600--Sobic006G131000 Sobic003G270600 Sobic003G270600 Sobic003G427600--Sobic003G270600 Sobic004G236200 Sobic004G236200 Sobic003G427600--Sobic004G236200 Sobic001G369000 Sobic001G369000 Sobic003G427600--Sobic001G369000 Sobic003G427600--Sobic001G281100 Sobic006G077300 Sobic006G077300 Sobic003G427600--Sobic006G077300 Sobic003G427600--Sobic004G344901 Sobic009G049400 Sobic009G049400 Sobic003G427600--Sobic009G049400
Octagon: transcription factors


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