Gene annotation
Transcriptome id Sobic.004G003401.2,Sobic.004G003401.1
Synonym -
Functional annotation -
UniProt C5XRI9 , A0A1Z5RKP1
Pfam PF01486 PF00319
Panther DB PTHR34212 PTHR34212:SF1
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G45660 : AGAMOUS-like 20
RAP-DB (Rice) LOC_Os02g01365.1 : expressed protein
MaizeGDB (Corn) Zm00025a049936 , Zm00025a043140 , Zm00025a041962 , Zm00025a053064 , Zm00025a048701 , Zm00025a018640
Brachypodium PNT65319 , KQK15335 , KQK15334 , KQK15336 , PNT65321 , KQJ99121 , KQJ92793 , KQK16273 , KQJ91889 , PNT65320
Barley HORVU6Hr1G002230.1 , HORVU6Hr1G002230.2 , HORVU7Hr1G025700.7 , HORVU7Hr1G025700.6 , HORVU7Hr1G025700.5 , HORVU7Hr1G025700.4 , HORVU7Hr1G025700.3 , HORVU7Hr1G025700.2 , HORVU7Hr1G025700.1 , HORVU7Hr1G025700.8
Wheat TraesCS7D02G261600 , TraesCS7B02G020800 , TraesCS7D02G120500 , TraesCS7B02G158600 , TraesCS6D02G014600 , TraesCS2B02G200800 , TraesCS7A02G122000 , TraesCS2A02G174300 , TraesCS2D02G181400 , TraesCS7D02G261600 , TraesCS7A02G260600 , TraesCS7A02G260600 , TraesCS6A02G011700 , TraesCS6A02G011700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G228700 expressed protein -
2 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
3 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
4 Sobic.010G243400 expressed protein -
5 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
6 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
7 Sobic.001G114000 expressed protein -
8 Sobic.009G041700 Fibronectin type III domain containing protein, expressed -
9 Sobic.006G200600 expressed protein -
10 Sobic.004G003501 - -
11 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
12 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
13 Sobic.010G278200 expressed protein -
14 Sobic.004G094300 protein kinase domain containing protein, expressed K04424: ZAK, sterile alpha motif and leucine zipper containing kinase AZK
15 Sobic.001G413200 expressed protein -
16 Sobic.009G257200 CK1_CaseinKinase_1.8 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
17 Sobic.001G261436 - -
18 Sobic.008G173400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
19 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
20 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5


Gene co-expression network
sample Sobic004G003401 Sobic004G003401 Sobic009G228700 Sobic009G228700 Sobic004G003401--Sobic009G228700 Sobic002G303600 Sobic002G303600 Sobic004G003401--Sobic002G303600 Sobic001G091300 Sobic001G091300 Sobic004G003401--Sobic001G091300 Sobic010G243400 Sobic010G243400 Sobic004G003401--Sobic010G243400 Sobic006G180000 Sobic006G180000 Sobic004G003401--Sobic006G180000 Sobic003G312200 Sobic003G312200 Sobic004G003401--Sobic003G312200 Sobic001G114000 Sobic001G114000 Sobic004G003401--Sobic001G114000 Sobic009G041700 Sobic009G041700 Sobic004G003401--Sobic009G041700 Sobic006G200600 Sobic006G200600 Sobic004G003401--Sobic006G200600 Sobic004G066200 Sobic004G066200 Sobic009G228700--Sobic004G066200 Sobic009G207000 Sobic009G207000 Sobic009G228700--Sobic009G207000 Sobic009G228700--Sobic001G091300 Sobic001G323000 Sobic001G323000 Sobic009G228700--Sobic001G323000 Sobic001G356600 Sobic001G356600 Sobic009G228700--Sobic001G356600 Sobic006G249700 Sobic006G249700 Sobic009G228700--Sobic006G249700 Sobic006G148200 Sobic006G148200 Sobic009G228700--Sobic006G148200 Sobic009G228700--Sobic003G312200 Sobic001G124200 Sobic001G124200 Sobic009G228700--Sobic001G124200 Sobic010G261600 Sobic010G261600 Sobic002G303600--Sobic010G261600 Sobic004G323700 Sobic004G323700 Sobic002G303600--Sobic004G323700 Sobic004G178200 Sobic004G178200 Sobic002G303600--Sobic004G178200 Sobic002G303600--Sobic006G180000 Sobic007G218000 Sobic007G218000 Sobic002G303600--Sobic007G218000 Sobic004G028100 Sobic004G028100 Sobic002G303600--Sobic004G028100 Sobic003G422900 Sobic003G422900 Sobic002G303600--Sobic003G422900 Sobic009G092400 Sobic009G092400 Sobic002G303600--Sobic009G092400 Sobic002G303600--Sobic004G003401 Sobic001G091300--Sobic009G228700 Sobic001G091300--Sobic003G312200 Sobic004G275700 Sobic004G275700 Sobic001G091300--Sobic004G275700 Sobic001G091300--Sobic004G066200 Sobic001G085100 Sobic001G085100 Sobic001G091300--Sobic001G085100 Sobic001G512300 Sobic001G512300 Sobic001G091300--Sobic001G512300 Sobic001G261436 Sobic001G261436 Sobic001G091300--Sobic001G261436 Sobic001G199100 Sobic001G199100 Sobic001G091300--Sobic001G199100 Sobic001G091300--Sobic002G303600 Sobic008G165000 Sobic008G165000 Sobic010G243400--Sobic008G165000 Sobic007G056100 Sobic007G056100 Sobic010G243400--Sobic007G056100 Sobic010G243400--Sobic010G261600 Sobic003G243700 Sobic003G243700 Sobic010G243400--Sobic003G243700 Sobic010G243400--Sobic009G041700 Sobic009G224000 Sobic009G224000 Sobic010G243400--Sobic009G224000 Sobic010G243400--Sobic004G003401 Sobic008G173400 Sobic008G173400 Sobic010G243400--Sobic008G173400 Sobic001G421400 Sobic001G421400 Sobic010G243400--Sobic001G421400 Sobic006G180000--Sobic002G303600 Sobic002G047700 Sobic002G047700 Sobic006G180000--Sobic002G047700 Sobic003G264100 Sobic003G264100 Sobic006G180000--Sobic003G264100 Sobic010G223300 Sobic010G223300 Sobic006G180000--Sobic010G223300 Sobic006G180000--Sobic009G092400 Sobic001G007000 Sobic001G007000 Sobic006G180000--Sobic001G007000 Sobic010G020400 Sobic010G020400 Sobic006G180000--Sobic010G020400 Sobic004G092500 Sobic004G092500 Sobic006G180000--Sobic004G092500 Sobic006G180000--Sobic004G028100 Sobic006G034000 Sobic006G034000 Sobic003G312200--Sobic006G034000 Sobic003G312200--Sobic001G091300 Sobic003G312200--Sobic001G323000 Sobic001G206900 Sobic001G206900 Sobic003G312200--Sobic001G206900 Sobic003G312200--Sobic009G228700 Sobic003G312200--Sobic001G261436 Sobic003G312200--Sobic001G085100 Sobic010G130000 Sobic010G130000 Sobic003G312200--Sobic010G130000 Sobic005G074500 Sobic005G074500 Sobic003G312200--Sobic005G074500 Sobic007G217000 Sobic007G217000 Sobic001G114000--Sobic007G217000 Sobic002G112700 Sobic002G112700 Sobic001G114000--Sobic002G112700 Sobic001G065000 Sobic001G065000 Sobic001G114000--Sobic001G065000 Sobic004G067700 Sobic004G067700 Sobic001G114000--Sobic004G067700 Sobic009G166300 Sobic009G166300 Sobic001G114000--Sobic009G166300 Sobic008G047800 Sobic008G047800 Sobic001G114000--Sobic008G047800 Sobic004G072100 Sobic004G072100 Sobic001G114000--Sobic004G072100 Sobic005G118600 Sobic005G118600 Sobic001G114000--Sobic005G118600 Sobic009G126400 Sobic009G126400 Sobic001G114000--Sobic009G126400 Sobic009G041700--Sobic001G114000 Sobic004G321100 Sobic004G321100 Sobic009G041700--Sobic004G321100 Sobic005G177700 Sobic005G177700 Sobic009G041700--Sobic005G177700 Sobic005G138300 Sobic005G138300 Sobic009G041700--Sobic005G138300 Sobic009G041700--Sobic007G218000 Sobic009G041700--Sobic010G243400 Sobic006G167600 Sobic006G167600 Sobic009G041700--Sobic006G167600 Sobic009G041700--Sobic004G067700 Sobic009G124700 Sobic009G124700 Sobic009G041700--Sobic009G124700 Sobic004G353200 Sobic004G353200 Sobic006G200600--Sobic004G353200 Sobic001G281600 Sobic001G281600 Sobic006G200600--Sobic001G281600 Sobic004G121100 Sobic004G121100 Sobic006G200600--Sobic004G121100 Sobic001G392300 Sobic001G392300 Sobic006G200600--Sobic001G392300 Sobic010G251000 Sobic010G251000 Sobic006G200600--Sobic010G251000 Sobic006G200600--Sobic008G047800 Sobic009G205200 Sobic009G205200 Sobic006G200600--Sobic009G205200 Sobic007G078600 Sobic007G078600 Sobic006G200600--Sobic007G078600 Sobic003G248200 Sobic003G248200 Sobic006G200600--Sobic003G248200
Octagon: transcription factors


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