Gene annotation
Transcriptome id Sobic.001G159600.1
Synonym Sb01g013910
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
transporter family protein, putative, expressed
UniProt C5WS29
Pfam PF00083
Panther DB PTHR24064 PTHR24064:SF287
NCBI CDD KOG0253; Synaptic vesicle transporter SV2 (major facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G13050 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os03g43720.1 : transporter family protein, putative, expressed
MaizeGDB (Corn) Zm00025a007329
Brachypodium PNT74396 , KQK14040 , KQK14048 , KQK14041 , KQK14042 , KQK14043 , KQK14044 , KQK14045 , KQK14046 , KQK14047 , KQK14039
Barley HORVU5Hr1G093350.12 , HORVU5Hr1G093350.11 , HORVU5Hr1G093350.10 , HORVU5Hr1G093350.15 , HORVU5Hr1G093350.14 , HORVU5Hr1G093350.19 , HORVU5Hr1G093350.16 , HORVU5Hr1G093350.3 , HORVU5Hr1G093350.2 , HORVU5Hr1G093350.6 , HORVU5Hr1G093350.5 , HORVU5Hr1G093350.4 , HORVU5Hr1G093350.9 , HORVU5Hr1G093350.8
Wheat TraesCS5A02G376900 , TraesCS5D02G386900 , TraesCS5D02G387000 , TraesCS5D02G387000 , TraesCS5D02G387000
Populus -


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cDNA sequences
Sobic.001G159600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G250200 4-amino-4-deoxychorismate synthase, putative, expressed K13950: para-aminobenzoate synthetase
2 Sobic.001G481900 SAC domain containing protein, putative, expressed -
3 Sobic.003G109100 decarboxylase, putative, expressed K01634: SGPL1, sphinganine-1-phosphate aldolase
4 Sobic.005G024200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.37 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
5 Sobic.006G090500 chloride channel C(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K05016: chloride channel 7
6 Sobic.001G382000 AGC_AGC_other_RS6K_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed K04688: ribosomal protein S6 kinase beta
7 Sobic.003G398100 antigen peptide transporter-like 1, chloroplast precursor, putative, expressed -
8 Sobic.006G087700 T-complex protein 11, putative, expressed -
9 Sobic.006G135600 Up-regulated by silicon application under drought stress (PubMedID : 24813726)@S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed K01611: speD, S-adenosylmethionine decarboxylase
10 Sobic.002G009700 AMP-binding domain containing protein, expressed -
11 Sobic.001G305500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.001G214100 expressed protein -
13 Sobic.004G261900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@diacylglycerol O-acyltransferase, putative, expressed K14457: MOGAT2, 2-acylglycerol O-acyltransferase 2
14 Sobic.002G130800 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
15 Sobic.003G247300 protein of unknown function DUF1296 domain containing protein, expressed -
16 Sobic.008G151100 protein kinase domain containing protein, expressed -
17 Sobic.003G238700 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.004G355000 SAC9, putative, expressed -
19 Sobic.004G053700 glyoxalase family protein, putative, expressed K00457: HPD, 4-hydroxyphenylpyruvate dioxygenase
20 Sobic.005G157000 expressed protein -


Gene co-expression network
sample Sobic001G159600 Sobic001G159600 Sobic010G250200 Sobic010G250200 Sobic001G159600--Sobic010G250200 Sobic001G481900 Sobic001G481900 Sobic001G159600--Sobic001G481900 Sobic003G109100 Sobic003G109100 Sobic001G159600--Sobic003G109100 Sobic005G024200 Sobic005G024200 Sobic001G159600--Sobic005G024200 Sobic006G090500 Sobic006G090500 Sobic001G159600--Sobic006G090500 Sobic001G382000 Sobic001G382000 Sobic001G159600--Sobic001G382000 Sobic003G398100 Sobic003G398100 Sobic001G159600--Sobic003G398100 Sobic006G087700 Sobic006G087700 Sobic001G159600--Sobic006G087700 Sobic006G135600 Sobic006G135600 Sobic001G159600--Sobic006G135600 Sobic010G250200--Sobic001G159600 Sobic004G295800 Sobic004G295800 Sobic010G250200--Sobic004G295800 Sobic010G250200--Sobic003G109100 Sobic001G474700 Sobic001G474700 Sobic010G250200--Sobic001G474700 Sobic001G373200 Sobic001G373200 Sobic010G250200--Sobic001G373200 Sobic009G094300 Sobic009G094300 Sobic010G250200--Sobic009G094300 Sobic007G024700 Sobic007G024700 Sobic010G250200--Sobic007G024700 Sobic002G424000 Sobic002G424000 Sobic010G250200--Sobic002G424000 Sobic010G250200--Sobic001G382000 Sobic002G187700 Sobic002G187700 Sobic001G481900--Sobic002G187700 Sobic004G306500 Sobic004G306500 Sobic001G481900--Sobic004G306500 Sobic003G198800 Sobic003G198800 Sobic001G481900--Sobic003G198800 Sobic003G372500 Sobic003G372500 Sobic001G481900--Sobic003G372500 Sobic010G147100 Sobic010G147100 Sobic001G481900--Sobic010G147100 Sobic003G115900 Sobic003G115900 Sobic001G481900--Sobic003G115900 Sobic008G059100 Sobic008G059100 Sobic001G481900--Sobic008G059100 Sobic001G128300 Sobic001G128300 Sobic001G481900--Sobic001G128300 Sobic007G164000 Sobic007G164000 Sobic001G481900--Sobic007G164000 Sobic004G052900 Sobic004G052900 Sobic003G109100--Sobic004G052900 Sobic003G109100--Sobic007G024700 Sobic001G270400 Sobic001G270400 Sobic003G109100--Sobic001G270400 Sobic003G100800 Sobic003G100800 Sobic003G109100--Sobic003G100800 Sobic003G109100--Sobic009G094300 Sobic006G245400 Sobic006G245400 Sobic003G109100--Sobic006G245400 Sobic001G137100 Sobic001G137100 Sobic003G109100--Sobic001G137100 Sobic002G340100 Sobic002G340100 Sobic003G109100--Sobic002G340100 Sobic010G205800 Sobic010G205800 Sobic003G109100--Sobic010G205800 Sobic005G024200--Sobic001G159600 Sobic003G302800 Sobic003G302800 Sobic005G024200--Sobic003G302800 Sobic004G266400 Sobic004G266400 Sobic005G024200--Sobic004G266400 Sobic005G024200--Sobic006G135600 Sobic004G071200 Sobic004G071200 Sobic005G024200--Sobic004G071200 Sobic003G365000 Sobic003G365000 Sobic005G024200--Sobic003G365000 Sobic005G024200--Sobic003G109100 Sobic009G034700 Sobic009G034700 Sobic005G024200--Sobic009G034700 Sobic005G024200--Sobic001G382000 Sobic002G130800 Sobic002G130800 Sobic006G090500--Sobic002G130800 Sobic001G350700 Sobic001G350700 Sobic006G090500--Sobic001G350700 Sobic006G090500--Sobic006G135600 Sobic006G090500--Sobic001G481900 Sobic008G093000 Sobic008G093000 Sobic006G090500--Sobic008G093000 Sobic004G005200 Sobic004G005200 Sobic006G090500--Sobic004G005200 Sobic001G070000 Sobic001G070000 Sobic006G090500--Sobic001G070000 Sobic004G233200 Sobic004G233200 Sobic006G090500--Sobic004G233200 Sobic006G090500--Sobic001G159600 Sobic001G382000--Sobic001G137100 Sobic001G382000--Sobic006G087700 Sobic009G249200 Sobic009G249200 Sobic001G382000--Sobic009G249200 Sobic001G382000--Sobic007G024700 Sobic001G382000--Sobic009G094300 Sobic001G382000--Sobic003G109100 Sobic001G382000--Sobic004G052900 Sobic001G382000--Sobic001G373200 Sobic008G070500 Sobic008G070500 Sobic001G382000--Sobic008G070500 Sobic006G199000 Sobic006G199000 Sobic003G398100--Sobic006G199000 Sobic008G153400 Sobic008G153400 Sobic003G398100--Sobic008G153400 Sobic009G207600 Sobic009G207600 Sobic003G398100--Sobic009G207600 Sobic001G504900 Sobic001G504900 Sobic003G398100--Sobic001G504900 Sobic003G257100 Sobic003G257100 Sobic003G398100--Sobic003G257100 Sobic001G496100 Sobic001G496100 Sobic003G398100--Sobic001G496100 Sobic003G355600 Sobic003G355600 Sobic003G398100--Sobic003G355600 Sobic003G322700 Sobic003G322700 Sobic003G398100--Sobic003G322700 Sobic001G150600 Sobic001G150600 Sobic003G398100--Sobic001G150600 Sobic007G075400 Sobic007G075400 Sobic006G087700--Sobic007G075400 Sobic006G087700--Sobic003G322700 Sobic006G233500 Sobic006G233500 Sobic006G087700--Sobic006G233500 Sobic010G139600 Sobic010G139600 Sobic006G087700--Sobic010G139600 Sobic003G301900 Sobic003G301900 Sobic006G087700--Sobic003G301900 Sobic003G320700 Sobic003G320700 Sobic006G087700--Sobic003G320700 Sobic006G204900 Sobic006G204900 Sobic006G087700--Sobic006G204900 Sobic002G128200 Sobic002G128200 Sobic006G087700--Sobic002G128200 Sobic006G043600 Sobic006G043600 Sobic006G087700--Sobic006G043600 Sobic006G135600--Sobic003G302800 Sobic002G305000 Sobic002G305000 Sobic006G135600--Sobic002G305000 Sobic006G135600--Sobic006G090500 Sobic001G016700 Sobic001G016700 Sobic006G135600--Sobic001G016700 Sobic006G135600--Sobic003G115900 Sobic006G135600--Sobic003G398100 Sobic006G135600--Sobic004G233200 Sobic006G135600--Sobic002G128200 Sobic001G488700 Sobic001G488700 Sobic006G135600--Sobic001G488700
Octagon: transcription factors


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