Gene annotation
Transcriptome id Sobic.001G481900.1
Synonym Sb01g045110
Functional annotation SAC domain containing protein, putative, expressed
UniProt C5WVS0
Pfam PF02383
Panther DB PTHR11200 PTHR11200:SF122
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007033; vacuole organization


Orthologs (automatic annotation)
TAIR AT3G14205 : Phosphoinositide phosphatase family protein
RAP-DB (Rice) LOC_Os03g08430.2 : SAC domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a053264 , Zm00025a000936 , Zm00025a004874 , Zm00025a047507 , Zm00025a017344 , Zm00025a017492 , Zm00025a017493 , Zm00025a017494 , Zm00025a035291 , Zm00025a010824 , Zm00025a010825
Brachypodium KQK23291
Barley HORVU4Hr1G077220.12 , HORVU4Hr1G077220.13 , HORVU4Hr1G077220.10 , HORVU4Hr1G077220.11 , HORVU4Hr1G077220.8 , HORVU4Hr1G077220.9 , HORVU4Hr1G077220.4 , HORVU4Hr1G077220.5 , HORVU4Hr1G077220.6 , HORVU4Hr1G077220.7 , HORVU4Hr1G077220.1 , HORVU4Hr1G077220.2 , HORVU4Hr1G077220.3
Wheat TraesCS4A02G006200 , TraesCS4A02G006200 , TraesCS4A02G006200 , TraesCS4D02G297800 , TraesCS4D02G297800 , TraesCS4D02G297800 , TraesCS4D02G297800 , TraesCS4D02G297800 , TraesCS4D02G297800 , TraesCS4D02G297800 , TraesCS4D02G297800 , TraesCS4D02G297800 , TraesCS4B02G298900 , TraesCS4B02G298900 , TraesCS4B02G298900 , TraesCS4B02G298900 , TraesCS4B02G298900 , TraesCS4B02G298900 , TraesCS4D02G297800 , TraesCS4D02G297800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G481900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G187700 expressed protein -
2 Sobic.004G306500 OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
3 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
4 Sobic.003G372500 DUF803 domain containing, putative, expressed -
5 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
6 Sobic.003G115900 lissencephaly type-1-like homology motif, putative, expressed -
7 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
8 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
9 Sobic.007G164000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
10 Sobic.001G488700 sucrose transporter 2(PubMedID : 26465154)@sucrose transporter 2(PubMedID : 26465154)@sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
11 Sobic.007G020600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux protein, putative, expressed -
12 Sobic.006G087700 T-complex protein 11, putative, expressed -
13 Sobic.002G130800 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
14 Sobic.003G302800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
15 Sobic.003G190400 rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed -
16 Sobic.010G227100 BTB/POZ domain containing protein, putative, expressed -
17 Sobic.006G002300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G305500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.006G275100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15119: solute carrier family 25, member 39/40
20 Sobic.004G091100 nuclear protein ZAP-related, putative, expressed K17602: YLP motif-containing protein 1


Gene co-expression network
sample Sobic001G481900 Sobic001G481900 Sobic002G187700 Sobic002G187700 Sobic001G481900--Sobic002G187700 Sobic004G306500 Sobic004G306500 Sobic001G481900--Sobic004G306500 Sobic003G198800 Sobic003G198800 Sobic001G481900--Sobic003G198800 Sobic003G372500 Sobic003G372500 Sobic001G481900--Sobic003G372500 Sobic010G147100 Sobic010G147100 Sobic001G481900--Sobic010G147100 Sobic003G115900 Sobic003G115900 Sobic001G481900--Sobic003G115900 Sobic008G059100 Sobic008G059100 Sobic001G481900--Sobic008G059100 Sobic001G128300 Sobic001G128300 Sobic001G481900--Sobic001G128300 Sobic007G164000 Sobic007G164000 Sobic001G481900--Sobic007G164000 Sobic002G187700--Sobic001G481900 Sobic002G187700--Sobic004G306500 Sobic002G187700--Sobic008G059100 Sobic002G187700--Sobic003G198800 Sobic001G488700 Sobic001G488700 Sobic002G187700--Sobic001G488700 Sobic002G187700--Sobic003G115900 Sobic006G002300 Sobic006G002300 Sobic002G187700--Sobic006G002300 Sobic003G190400 Sobic003G190400 Sobic002G187700--Sobic003G190400 Sobic004G169000 Sobic004G169000 Sobic002G187700--Sobic004G169000 Sobic004G306500--Sobic001G481900 Sobic004G306500--Sobic002G187700 Sobic007G020600 Sobic007G020600 Sobic004G306500--Sobic007G020600 Sobic003G086900 Sobic003G086900 Sobic004G306500--Sobic003G086900 Sobic010G196500 Sobic010G196500 Sobic004G306500--Sobic010G196500 Sobic009G161550 Sobic009G161550 Sobic004G306500--Sobic009G161550 Sobic004G306500--Sobic001G128300 Sobic004G091100 Sobic004G091100 Sobic004G306500--Sobic004G091100 Sobic004G306500--Sobic004G169000 Sobic001G534700 Sobic001G534700 Sobic003G198800--Sobic001G534700 Sobic009G074400 Sobic009G074400 Sobic003G198800--Sobic009G074400 Sobic003G275700 Sobic003G275700 Sobic003G198800--Sobic003G275700 Sobic006G257800 Sobic006G257800 Sobic003G198800--Sobic006G257800 Sobic003G155100 Sobic003G155100 Sobic003G198800--Sobic003G155100 Sobic003G198800--Sobic001G128300 Sobic003G198800--Sobic001G481900 Sobic008G151100 Sobic008G151100 Sobic003G198800--Sobic008G151100 Sobic002G411600 Sobic002G411600 Sobic003G198800--Sobic002G411600 Sobic007G075400 Sobic007G075400 Sobic003G372500--Sobic007G075400 Sobic003G372500--Sobic010G147100 Sobic003G316500 Sobic003G316500 Sobic003G372500--Sobic003G316500 Sobic001G050200 Sobic001G050200 Sobic003G372500--Sobic001G050200 Sobic009G191000 Sobic009G191000 Sobic003G372500--Sobic009G191000 Sobic010G227100 Sobic010G227100 Sobic003G372500--Sobic010G227100 Sobic003G372500--Sobic001G534700 Sobic003G313500 Sobic003G313500 Sobic003G372500--Sobic003G313500 Sobic001G390800 Sobic001G390800 Sobic003G372500--Sobic001G390800 Sobic010G147100--Sobic003G316500 Sobic010G278200 Sobic010G278200 Sobic010G147100--Sobic010G278200 Sobic010G074300 Sobic010G074300 Sobic010G147100--Sobic010G074300 Sobic010G147100--Sobic003G313500 Sobic010G147100--Sobic001G390800 Sobic002G311100 Sobic002G311100 Sobic010G147100--Sobic002G311100 Sobic009G053900 Sobic009G053900 Sobic010G147100--Sobic009G053900 Sobic001G268200 Sobic001G268200 Sobic010G147100--Sobic001G268200 Sobic003G118200 Sobic003G118200 Sobic010G147100--Sobic003G118200 Sobic003G115900--Sobic002G187700 Sobic003G115900--Sobic003G198800 Sobic001G381600 Sobic001G381600 Sobic003G115900--Sobic001G381600 Sobic003G115900--Sobic006G002300 Sobic003G115900--Sobic004G091100 Sobic003G115900--Sobic009G074400 Sobic003G115900--Sobic001G481900 Sobic001G107600 Sobic001G107600 Sobic003G115900--Sobic001G107600 Sobic010G139600 Sobic010G139600 Sobic003G115900--Sobic010G139600 Sobic008G059100--Sobic001G488700 Sobic008G059100--Sobic002G187700 Sobic001G409300 Sobic001G409300 Sobic008G059100--Sobic001G409300 Sobic008G059100--Sobic001G481900 Sobic004G233200 Sobic004G233200 Sobic008G059100--Sobic004G233200 Sobic003G302800 Sobic003G302800 Sobic008G059100--Sobic003G302800 Sobic009G190700 Sobic009G190700 Sobic008G059100--Sobic009G190700 Sobic008G059100--Sobic007G164000 Sobic010G262500 Sobic010G262500 Sobic008G059100--Sobic010G262500 Sobic009G165700 Sobic009G165700 Sobic001G128300--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic001G128300--Sobic001G451400 Sobic001G251200 Sobic001G251200 Sobic001G128300--Sobic001G251200 Sobic001G128300--Sobic004G091100 Sobic001G043100 Sobic001G043100 Sobic001G128300--Sobic001G043100 Sobic009G109925 Sobic009G109925 Sobic001G128300--Sobic009G109925 Sobic001G128300--Sobic003G198800 Sobic001G441400 Sobic001G441400 Sobic001G128300--Sobic001G441400 Sobic002G211800 Sobic002G211800 Sobic001G128300--Sobic002G211800 Sobic003G051000 Sobic003G051000 Sobic007G164000--Sobic003G051000 Sobic007G164000--Sobic002G187700 Sobic007G164000--Sobic001G481900 Sobic007G164000--Sobic003G190400 Sobic007G164000--Sobic001G128300 Sobic007G164000--Sobic008G059100 Sobic007G164000--Sobic003G198800 Sobic001G390200 Sobic001G390200 Sobic007G164000--Sobic001G390200 Sobic001G057700 Sobic001G057700 Sobic007G164000--Sobic001G057700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.