Gene annotation
Transcriptome id Sobic.007G164000.1
Synonym GCN1, Sb07g023740, ATGCN1
Functional annotation ABC transporter, ATP-binding protein, putative, expressed
UniProt C5YMS9
Pfam PF12848 PF00005
Panther DB PTHR19211 PTHR19211:SF52
NCBI CDD -
KEGG Orthology K06185; ATP-binding cassette, subfamily F, member 2
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT5G60790 : ABC transporter family protein
RAP-DB (Rice) LOC_Os08g45010.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a054141 , Zm00025a030510 , Zm00025a024904
Brachypodium KQJ91656 , KQJ91655 , KQJ94694
Barley HORVU4Hr1G000620.2 , HORVU4Hr1G000620.3 , HORVU4Hr1G000620.1 , HORVU4Hr1G000620.6 , HORVU4Hr1G000620.4 , HORVU4Hr1G000620.5 , HORVU7Hr1G069230.6 , HORVU7Hr1G069230.5 , HORVU7Hr1G069230.4 , HORVU7Hr1G069230.3 , HORVU7Hr1G069230.2 , HORVU7Hr1G069230.1
Wheat TraesCS7A02G291300 , TraesCS7D02G290800 , TraesCS7D02G290800 , TraesCS4A02G000500 , TraesCS4B02G002700 , TraesCS6A02G356200 , TraesCS4D02G000500 , TraesCS7B02G181800 , TraesCS7B02G181800
Populus -


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cDNA sequences
Sobic.007G164000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G051000 expressed protein -
2 Sobic.002G187700 expressed protein -
3 Sobic.001G481900 SAC domain containing protein, putative, expressed -
4 Sobic.003G190400 rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed -
5 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
6 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
7 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
8 Sobic.001G390200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
9 Sobic.001G057700 heat stress transcription factor, putative, expressed K09419: heat shock transcription factor, other eukaryote
10 Sobic.003G302800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
11 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
12 Sobic.010G236300 "domain confirmed by Pfam database, expressed in root, expression induced BR treatment"(PubMedID : 20499123)@auxin response factor 18, putative, expressed -
13 Sobic.003G115900 lissencephaly type-1-like homology motif, putative, expressed -
14 Sobic.001G381600 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
15 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
16 Sobic.010G262500 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
17 Sobic.006G002300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.010G019000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized membrane protein, putative, expressed -
19 Sobic.001G303100 expressed protein -
20 Sobic.009G190700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@jacalin-like lectin domain containing protein, expressed -


Gene co-expression network
sample Sobic007G164000 Sobic007G164000 Sobic003G051000 Sobic003G051000 Sobic007G164000--Sobic003G051000 Sobic002G187700 Sobic002G187700 Sobic007G164000--Sobic002G187700 Sobic001G481900 Sobic001G481900 Sobic007G164000--Sobic001G481900 Sobic003G190400 Sobic003G190400 Sobic007G164000--Sobic003G190400 Sobic001G128300 Sobic001G128300 Sobic007G164000--Sobic001G128300 Sobic008G059100 Sobic008G059100 Sobic007G164000--Sobic008G059100 Sobic003G198800 Sobic003G198800 Sobic007G164000--Sobic003G198800 Sobic001G390200 Sobic001G390200 Sobic007G164000--Sobic001G390200 Sobic001G057700 Sobic001G057700 Sobic007G164000--Sobic001G057700 Sobic003G051000--Sobic007G164000 Sobic003G051000--Sobic001G057700 Sobic004G169000 Sobic004G169000 Sobic003G051000--Sobic004G169000 Sobic005G084800 Sobic005G084800 Sobic003G051000--Sobic005G084800 Sobic010G236300 Sobic010G236300 Sobic003G051000--Sobic010G236300 Sobic001G498000 Sobic001G498000 Sobic003G051000--Sobic001G498000 Sobic003G043300 Sobic003G043300 Sobic003G051000--Sobic003G043300 Sobic003G051000--Sobic002G187700 Sobic003G355900 Sobic003G355900 Sobic003G051000--Sobic003G355900 Sobic002G187700--Sobic001G481900 Sobic004G306500 Sobic004G306500 Sobic002G187700--Sobic004G306500 Sobic002G187700--Sobic008G059100 Sobic002G187700--Sobic003G198800 Sobic001G488700 Sobic001G488700 Sobic002G187700--Sobic001G488700 Sobic003G115900 Sobic003G115900 Sobic002G187700--Sobic003G115900 Sobic006G002300 Sobic006G002300 Sobic002G187700--Sobic006G002300 Sobic002G187700--Sobic003G190400 Sobic002G187700--Sobic004G169000 Sobic001G481900--Sobic002G187700 Sobic001G481900--Sobic004G306500 Sobic001G481900--Sobic003G198800 Sobic003G372500 Sobic003G372500 Sobic001G481900--Sobic003G372500 Sobic010G147100 Sobic010G147100 Sobic001G481900--Sobic010G147100 Sobic001G481900--Sobic003G115900 Sobic001G481900--Sobic008G059100 Sobic001G481900--Sobic001G128300 Sobic001G481900--Sobic007G164000 Sobic010G020800 Sobic010G020800 Sobic003G190400--Sobic010G020800 Sobic003G301900 Sobic003G301900 Sobic003G190400--Sobic003G301900 Sobic003G190400--Sobic002G187700 Sobic005G084500 Sobic005G084500 Sobic003G190400--Sobic005G084500 Sobic007G190000 Sobic007G190000 Sobic003G190400--Sobic007G190000 Sobic004G356700 Sobic004G356700 Sobic003G190400--Sobic004G356700 Sobic002G146300 Sobic002G146300 Sobic003G190400--Sobic002G146300 Sobic003G190400--Sobic004G169000 Sobic003G190400--Sobic006G002300 Sobic009G165700 Sobic009G165700 Sobic001G128300--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic001G128300--Sobic001G451400 Sobic001G251200 Sobic001G251200 Sobic001G128300--Sobic001G251200 Sobic004G091100 Sobic004G091100 Sobic001G128300--Sobic004G091100 Sobic001G043100 Sobic001G043100 Sobic001G128300--Sobic001G043100 Sobic009G109925 Sobic009G109925 Sobic001G128300--Sobic009G109925 Sobic001G128300--Sobic003G198800 Sobic001G441400 Sobic001G441400 Sobic001G128300--Sobic001G441400 Sobic002G211800 Sobic002G211800 Sobic001G128300--Sobic002G211800 Sobic008G059100--Sobic001G488700 Sobic008G059100--Sobic002G187700 Sobic001G409300 Sobic001G409300 Sobic008G059100--Sobic001G409300 Sobic008G059100--Sobic001G481900 Sobic004G233200 Sobic004G233200 Sobic008G059100--Sobic004G233200 Sobic003G302800 Sobic003G302800 Sobic008G059100--Sobic003G302800 Sobic009G190700 Sobic009G190700 Sobic008G059100--Sobic009G190700 Sobic008G059100--Sobic007G164000 Sobic010G262500 Sobic010G262500 Sobic008G059100--Sobic010G262500 Sobic001G534700 Sobic001G534700 Sobic003G198800--Sobic001G534700 Sobic009G074400 Sobic009G074400 Sobic003G198800--Sobic009G074400 Sobic003G275700 Sobic003G275700 Sobic003G198800--Sobic003G275700 Sobic006G257800 Sobic006G257800 Sobic003G198800--Sobic006G257800 Sobic003G155100 Sobic003G155100 Sobic003G198800--Sobic003G155100 Sobic003G198800--Sobic001G128300 Sobic003G198800--Sobic001G481900 Sobic008G151100 Sobic008G151100 Sobic003G198800--Sobic008G151100 Sobic002G411600 Sobic002G411600 Sobic003G198800--Sobic002G411600 Sobic001G390200--Sobic007G164000 Sobic001G390200--Sobic001G128300 Sobic010G019000 Sobic010G019000 Sobic001G390200--Sobic010G019000 Sobic001G390200--Sobic003G198800 Sobic001G381600 Sobic001G381600 Sobic001G390200--Sobic001G381600 Sobic008G152600 Sobic008G152600 Sobic001G390200--Sobic008G152600 Sobic008G047400 Sobic008G047400 Sobic001G390200--Sobic008G047400 Sobic003G242000 Sobic003G242000 Sobic001G390200--Sobic003G242000 Sobic001G064200 Sobic001G064200 Sobic001G390200--Sobic001G064200 Sobic007G146400 Sobic007G146400 Sobic001G057700--Sobic007G146400 Sobic003G381700 Sobic003G381700 Sobic001G057700--Sobic003G381700 Sobic001G057700--Sobic003G051000 Sobic003G264800 Sobic003G264800 Sobic001G057700--Sobic003G264800 Sobic007G079400 Sobic007G079400 Sobic001G057700--Sobic007G079400 Sobic008G187100 Sobic008G187100 Sobic001G057700--Sobic008G187100 Sobic003G339700 Sobic003G339700 Sobic001G057700--Sobic003G339700 Sobic004G355700 Sobic004G355700 Sobic001G057700--Sobic004G355700 Sobic005G132000 Sobic005G132000 Sobic001G057700--Sobic005G132000
Octagon: transcription factors


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