Gene annotation
Transcriptome id Sobic.008G059100.1
Synonym Sb08g004990, ATAAP3, AAP3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
amino acid transporter, putative, expressed
UniProt C5YT50
Pfam PF01490
Panther DB PTHR22950 PTHR22950:SF290
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G77380 : amino acid permease 3
RAP-DB (Rice) LOC_Os12g08130.1 : amino acid transporter, putative, expressed
MaizeGDB (Corn) Zm00025a025708 , Zm00025a030927 , Zm00025a054079 , Zm00025a034135 , Zm00025a009452 , Zm00025a026558 , Zm00025a054084 , Zm00025a025707 , Zm00025a054081 , Zm00025a054082 , Zm00025a037366
Brachypodium PNT76161 , PNT76162 , KQJ91992 , KQJ91991 , PNT71213 , PNT71214 , KQK18868 , KQK18866 , KQK18867 , KQJ89071 , KQK06164 , KQJ83307 , KQK10853 , KQK10901 , KQK18009 , KQK10902
Barley HORVU5Hr1G037660.9 , HORVU5Hr1G037660.8 , HORVU5Hr1G037660.5 , HORVU5Hr1G037660.4 , HORVU5Hr1G037660.6 , HORVU5Hr1G037660.1 , HORVU5Hr1G037660.3 , HORVU7Hr1G088560.6 , HORVU7Hr1G088560.7 , HORVU7Hr1G088560.4 , HORVU7Hr1G088560.5 , HORVU7Hr1G088560.2 , HORVU7Hr1G088560.3 , HORVU7Hr1G088560.1 , HORVU7Hr1G038330.8 , HORVU7Hr1G038330.1 , HORVU7Hr1G038330.2 , HORVU7Hr1G038330.3 , HORVU7Hr1G038330.4 , HORVU7Hr1G038330.5 , HORVU7Hr1G038330.6 , HORVU7Hr1G038330.7 , HORVU1Hr1G064970.11 , HORVU1Hr1G064970.10 , HORVU1Hr1G064970.12 , HORVU2Hr1G084800.1 , HORVU3Hr1G091020.1 , HORVU2Hr1G111140.8 , HORVU2Hr1G111140.1 , HORVU2Hr1G111140.2 , HORVU2Hr1G111140.3 , HORVU2Hr1G111140.4 , HORVU2Hr1G111140.5 , HORVU2Hr1G111140.6 , HORVU2Hr1G111140.7 , HORVU3Hr1G091120.1 , HORVU3Hr1G091120.2 , HORVU3Hr1G091120.3 , HORVU3Hr1G091120.4 , HORVU3Hr1G091120.5 , HORVU3Hr1G091120.6 , HORVU3Hr1G091120.7 , HORVU4Hr1G043680.1 , HORVU4Hr1G043680.3 , HORVU4Hr1G043680.2 , HORVU4Hr1G043680.5 , HORVU4Hr1G043680.4 , HORVU3Hr1G091020.3 , HORVU1Hr1G064970.9 , HORVU1Hr1G064970.8 , HORVU1Hr1G064970.1 , HORVU1Hr1G064970.3 , HORVU1Hr1G064970.2 , HORVU1Hr1G064970.5 , HORVU1Hr1G064970.4 , HORVU1Hr1G064970.7 , HORVU1Hr1G064970.6 , HORVU3Hr1G091020.2 , HORVU3Hr1G091020.5 , HORVU3Hr1G091020.4 , HORVU3Hr1G091020.6
Wheat TraesCS2D02G500000 , TraesCS4B02G100800 , TraesCS3B02G420700 , TraesCS1A02G264500 , TraesCS4D02G097400 , TraesCS3D02G402200 , TraesCS7A02G188200 , TraesCS2A02G499800 , TraesCS7D02G388300 , TraesCS3B02G441100 , TraesCS5B02G116100 , TraesCS7A02G356600 , TraesCS3D02G381500 , TraesCS3D02G402300 , TraesCS2B02G527800 , TraesCS1D02G264700 , TraesCS3B02G441200 , TraesCS7B02G271200 , TraesCS4A02G215300 , TraesCS3B02G441300 , TraesCS5A02G115100 , TraesCS3A02G406800 , TraesCS5D02G125700 , TraesCS3A02G406900 , TraesCS1B02G275200 , TraesCS7D02G366200 , TraesCS2B02G367000 , TraesCS2D02G347000 , TraesCS3A02G388000 , TraesCS7D02G189000 , TraesCS7B02G093200 , TraesCS3A02G407000 , TraesCS2A02G348600
Populus -


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cDNA sequences
Sobic.008G059100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G488700 sucrose transporter 2(PubMedID : 26465154)@sucrose transporter 2(PubMedID : 26465154)@sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
2 Sobic.002G187700 expressed protein -
3 Sobic.001G409300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphatidylinositol transfer protein alpha isoform, putative, expressed -
4 Sobic.001G481900 SAC domain containing protein, putative, expressed -
5 Sobic.004G233200 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
6 Sobic.003G302800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
7 Sobic.009G190700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@jacalin-like lectin domain containing protein, expressed -
8 Sobic.007G164000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
9 Sobic.010G262500 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
10 Sobic.003G115900 lissencephaly type-1-like homology motif, putative, expressed -
11 Sobic.010G220000 MYB family transcription factor, putative, expressed -
12 Sobic.008G047400 OsFBT14 - F-box and tubby domain containing protein, expressed -
13 Sobic.001G500800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-coumarate--CoA ligase-like 7, putative, expressed K01904: 4-coumarate--CoA ligase
14 Sobic.004G179300 chloride channel protein, putative, expressed K05016: chloride channel 7
15 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
16 Sobic.006G135600 Up-regulated by silicon application under drought stress (PubMedID : 24813726)@S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed K01611: speD, S-adenosylmethionine decarboxylase
17 Sobic.003G242000 AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
18 Sobic.010G272200 leucine zipper protein-like, putative, expressed -
19 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
20 Sobic.001G298700 - -


Gene co-expression network
sample Sobic008G059100 Sobic008G059100 Sobic001G488700 Sobic001G488700 Sobic008G059100--Sobic001G488700 Sobic002G187700 Sobic002G187700 Sobic008G059100--Sobic002G187700 Sobic001G409300 Sobic001G409300 Sobic008G059100--Sobic001G409300 Sobic001G481900 Sobic001G481900 Sobic008G059100--Sobic001G481900 Sobic004G233200 Sobic004G233200 Sobic008G059100--Sobic004G233200 Sobic003G302800 Sobic003G302800 Sobic008G059100--Sobic003G302800 Sobic009G190700 Sobic009G190700 Sobic008G059100--Sobic009G190700 Sobic007G164000 Sobic007G164000 Sobic008G059100--Sobic007G164000 Sobic010G262500 Sobic010G262500 Sobic008G059100--Sobic010G262500 Sobic001G488700--Sobic008G059100 Sobic001G500800 Sobic001G500800 Sobic001G488700--Sobic001G500800 Sobic010G196500 Sobic010G196500 Sobic001G488700--Sobic010G196500 Sobic001G488700--Sobic002G187700 Sobic001G488700--Sobic004G233200 Sobic006G175800 Sobic006G175800 Sobic001G488700--Sobic006G175800 Sobic001G488700--Sobic003G302800 Sobic001G488700--Sobic001G481900 Sobic002G266000 Sobic002G266000 Sobic001G488700--Sobic002G266000 Sobic002G187700--Sobic001G481900 Sobic004G306500 Sobic004G306500 Sobic002G187700--Sobic004G306500 Sobic002G187700--Sobic008G059100 Sobic003G198800 Sobic003G198800 Sobic002G187700--Sobic003G198800 Sobic002G187700--Sobic001G488700 Sobic003G115900 Sobic003G115900 Sobic002G187700--Sobic003G115900 Sobic006G002300 Sobic006G002300 Sobic002G187700--Sobic006G002300 Sobic003G190400 Sobic003G190400 Sobic002G187700--Sobic003G190400 Sobic004G169000 Sobic004G169000 Sobic002G187700--Sobic004G169000 Sobic001G409300--Sobic008G059100 Sobic004G211900 Sobic004G211900 Sobic001G409300--Sobic004G211900 Sobic003G242000 Sobic003G242000 Sobic001G409300--Sobic003G242000 Sobic001G217400 Sobic001G217400 Sobic001G409300--Sobic001G217400 Sobic010G272200 Sobic010G272200 Sobic001G409300--Sobic010G272200 Sobic003G051600 Sobic003G051600 Sobic001G409300--Sobic003G051600 Sobic003G269800 Sobic003G269800 Sobic001G409300--Sobic003G269800 Sobic003G397500 Sobic003G397500 Sobic001G409300--Sobic003G397500 Sobic009G136100 Sobic009G136100 Sobic001G409300--Sobic009G136100 Sobic001G481900--Sobic002G187700 Sobic001G481900--Sobic004G306500 Sobic001G481900--Sobic003G198800 Sobic003G372500 Sobic003G372500 Sobic001G481900--Sobic003G372500 Sobic010G147100 Sobic010G147100 Sobic001G481900--Sobic010G147100 Sobic001G481900--Sobic003G115900 Sobic001G481900--Sobic008G059100 Sobic001G128300 Sobic001G128300 Sobic001G481900--Sobic001G128300 Sobic001G481900--Sobic007G164000 Sobic004G233200--Sobic001G488700 Sobic004G233200--Sobic010G147100 Sobic002G130800 Sobic002G130800 Sobic004G233200--Sobic002G130800 Sobic004G233200--Sobic008G059100 Sobic001G390800 Sobic001G390800 Sobic004G233200--Sobic001G390800 Sobic004G233200--Sobic002G187700 Sobic002G305000 Sobic002G305000 Sobic004G233200--Sobic002G305000 Sobic001G268200 Sobic001G268200 Sobic004G233200--Sobic001G268200 Sobic004G233200--Sobic004G306500 Sobic003G302800--Sobic008G059100 Sobic003G302800--Sobic002G187700 Sobic003G302800--Sobic001G488700 Sobic006G135600 Sobic006G135600 Sobic003G302800--Sobic006G135600 Sobic003G302800--Sobic001G481900 Sobic003G302800--Sobic001G500800 Sobic001G381200 Sobic001G381200 Sobic003G302800--Sobic001G381200 Sobic003G302800--Sobic007G164000 Sobic003G302800--Sobic004G306500 Sobic009G190700--Sobic008G059100 Sobic003G313900 Sobic003G313900 Sobic009G190700--Sobic003G313900 Sobic009G190700--Sobic007G164000 Sobic003G354900 Sobic003G354900 Sobic009G190700--Sobic003G354900 Sobic009G190700--Sobic001G409300 Sobic003G051000 Sobic003G051000 Sobic009G190700--Sobic003G051000 Sobic009G190700--Sobic002G187700 Sobic001G070000 Sobic001G070000 Sobic009G190700--Sobic001G070000 Sobic009G190700--Sobic003G242000 Sobic007G164000--Sobic003G051000 Sobic007G164000--Sobic002G187700 Sobic007G164000--Sobic001G481900 Sobic007G164000--Sobic003G190400 Sobic007G164000--Sobic001G128300 Sobic007G164000--Sobic008G059100 Sobic007G164000--Sobic003G198800 Sobic001G390200 Sobic001G390200 Sobic007G164000--Sobic001G390200 Sobic001G057700 Sobic001G057700 Sobic007G164000--Sobic001G057700 Sobic010G262500--Sobic006G175800 Sobic001G298700 Sobic001G298700 Sobic010G262500--Sobic001G298700 Sobic005G221250 Sobic005G221250 Sobic010G262500--Sobic005G221250 Sobic003G331300 Sobic003G331300 Sobic010G262500--Sobic003G331300 Sobic005G150350 Sobic005G150350 Sobic010G262500--Sobic005G150350 Sobic010G013200 Sobic010G013200 Sobic010G262500--Sobic010G013200 Sobic003G112800 Sobic003G112800 Sobic010G262500--Sobic003G112800 Sobic010G262500--Sobic008G059100 Sobic010G262500--Sobic001G488700
Octagon: transcription factors


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