Gene annotation
Transcriptome id Sobic.002G187700.1,Sobic.002G187700.2
Synonym Sb02g023570
Functional annotation expressed protein
UniProt A0A1B6QCA0
Pfam -
Panther DB PTHR34464 PTHR34464:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G38060 : -
RAP-DB (Rice) LOC_Os08g31940.1 : expressed protein
MaizeGDB (Corn) Zm00025a013834 , Zm00025a046800
Brachypodium KQJ90084
Barley HORVU5Hr1G059140.1 , HORVU5Hr1G059140.3 , HORVU5Hr1G059140.6
Wheat TraesCS5D02G204100 , TraesCS5A02G198200
Populus -


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cDNA sequences
Sobic.002G187700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G481900 SAC domain containing protein, putative, expressed -
2 Sobic.004G306500 OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
3 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
4 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
5 Sobic.001G488700 sucrose transporter 2(PubMedID : 26465154)@sucrose transporter 2(PubMedID : 26465154)@sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
6 Sobic.003G115900 lissencephaly type-1-like homology motif, putative, expressed -
7 Sobic.006G002300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.003G190400 rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed -
9 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
10 Sobic.007G164000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
11 Sobic.010G196500 zinc-binding protein, putative, expressed -
12 Sobic.003G372500 DUF803 domain containing, putative, expressed -
13 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
14 Sobic.003G302800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
15 Sobic.004G233200 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
16 Sobic.004G179300 chloride channel protein, putative, expressed K05016: chloride channel 7
17 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
18 Sobic.002G386100 expressed protein -
19 Sobic.003G301900 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
20 Sobic.007G020600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux protein, putative, expressed -


Gene co-expression network
sample Sobic002G187700 Sobic002G187700 Sobic001G481900 Sobic001G481900 Sobic002G187700--Sobic001G481900 Sobic004G306500 Sobic004G306500 Sobic002G187700--Sobic004G306500 Sobic008G059100 Sobic008G059100 Sobic002G187700--Sobic008G059100 Sobic003G198800 Sobic003G198800 Sobic002G187700--Sobic003G198800 Sobic001G488700 Sobic001G488700 Sobic002G187700--Sobic001G488700 Sobic003G115900 Sobic003G115900 Sobic002G187700--Sobic003G115900 Sobic006G002300 Sobic006G002300 Sobic002G187700--Sobic006G002300 Sobic003G190400 Sobic003G190400 Sobic002G187700--Sobic003G190400 Sobic004G169000 Sobic004G169000 Sobic002G187700--Sobic004G169000 Sobic001G481900--Sobic002G187700 Sobic001G481900--Sobic004G306500 Sobic001G481900--Sobic003G198800 Sobic003G372500 Sobic003G372500 Sobic001G481900--Sobic003G372500 Sobic010G147100 Sobic010G147100 Sobic001G481900--Sobic010G147100 Sobic001G481900--Sobic003G115900 Sobic001G481900--Sobic008G059100 Sobic001G128300 Sobic001G128300 Sobic001G481900--Sobic001G128300 Sobic007G164000 Sobic007G164000 Sobic001G481900--Sobic007G164000 Sobic004G306500--Sobic001G481900 Sobic004G306500--Sobic002G187700 Sobic007G020600 Sobic007G020600 Sobic004G306500--Sobic007G020600 Sobic003G086900 Sobic003G086900 Sobic004G306500--Sobic003G086900 Sobic010G196500 Sobic010G196500 Sobic004G306500--Sobic010G196500 Sobic009G161550 Sobic009G161550 Sobic004G306500--Sobic009G161550 Sobic004G306500--Sobic001G128300 Sobic004G091100 Sobic004G091100 Sobic004G306500--Sobic004G091100 Sobic004G306500--Sobic004G169000 Sobic008G059100--Sobic001G488700 Sobic008G059100--Sobic002G187700 Sobic001G409300 Sobic001G409300 Sobic008G059100--Sobic001G409300 Sobic008G059100--Sobic001G481900 Sobic004G233200 Sobic004G233200 Sobic008G059100--Sobic004G233200 Sobic003G302800 Sobic003G302800 Sobic008G059100--Sobic003G302800 Sobic009G190700 Sobic009G190700 Sobic008G059100--Sobic009G190700 Sobic008G059100--Sobic007G164000 Sobic010G262500 Sobic010G262500 Sobic008G059100--Sobic010G262500 Sobic001G534700 Sobic001G534700 Sobic003G198800--Sobic001G534700 Sobic009G074400 Sobic009G074400 Sobic003G198800--Sobic009G074400 Sobic003G275700 Sobic003G275700 Sobic003G198800--Sobic003G275700 Sobic006G257800 Sobic006G257800 Sobic003G198800--Sobic006G257800 Sobic003G155100 Sobic003G155100 Sobic003G198800--Sobic003G155100 Sobic003G198800--Sobic001G128300 Sobic003G198800--Sobic001G481900 Sobic008G151100 Sobic008G151100 Sobic003G198800--Sobic008G151100 Sobic002G411600 Sobic002G411600 Sobic003G198800--Sobic002G411600 Sobic001G488700--Sobic008G059100 Sobic001G500800 Sobic001G500800 Sobic001G488700--Sobic001G500800 Sobic001G488700--Sobic010G196500 Sobic001G488700--Sobic002G187700 Sobic001G488700--Sobic004G233200 Sobic006G175800 Sobic006G175800 Sobic001G488700--Sobic006G175800 Sobic001G488700--Sobic003G302800 Sobic001G488700--Sobic001G481900 Sobic002G266000 Sobic002G266000 Sobic001G488700--Sobic002G266000 Sobic003G115900--Sobic002G187700 Sobic003G115900--Sobic003G198800 Sobic001G381600 Sobic001G381600 Sobic003G115900--Sobic001G381600 Sobic003G115900--Sobic006G002300 Sobic003G115900--Sobic004G091100 Sobic003G115900--Sobic009G074400 Sobic003G115900--Sobic001G481900 Sobic001G107600 Sobic001G107600 Sobic003G115900--Sobic001G107600 Sobic010G139600 Sobic010G139600 Sobic003G115900--Sobic010G139600 Sobic006G002300--Sobic003G198800 Sobic006G002300--Sobic001G381600 Sobic006G002300--Sobic002G187700 Sobic006G002300--Sobic003G115900 Sobic002G128200 Sobic002G128200 Sobic006G002300--Sobic002G128200 Sobic007G198300 Sobic007G198300 Sobic006G002300--Sobic007G198300 Sobic003G301900 Sobic003G301900 Sobic006G002300--Sobic003G301900 Sobic003G229300 Sobic003G229300 Sobic006G002300--Sobic003G229300 Sobic001G375100 Sobic001G375100 Sobic006G002300--Sobic001G375100 Sobic010G020800 Sobic010G020800 Sobic003G190400--Sobic010G020800 Sobic003G190400--Sobic003G301900 Sobic003G190400--Sobic002G187700 Sobic005G084500 Sobic005G084500 Sobic003G190400--Sobic005G084500 Sobic007G190000 Sobic007G190000 Sobic003G190400--Sobic007G190000 Sobic004G356700 Sobic004G356700 Sobic003G190400--Sobic004G356700 Sobic002G146300 Sobic002G146300 Sobic003G190400--Sobic002G146300 Sobic003G190400--Sobic004G169000 Sobic003G190400--Sobic006G002300 Sobic001G352400 Sobic001G352400 Sobic004G169000--Sobic001G352400 Sobic002G341000 Sobic002G341000 Sobic004G169000--Sobic002G341000 Sobic001G333800 Sobic001G333800 Sobic004G169000--Sobic001G333800 Sobic004G281800 Sobic004G281800 Sobic004G169000--Sobic004G281800 Sobic006G050700 Sobic006G050700 Sobic004G169000--Sobic006G050700 Sobic004G169000--Sobic006G175800 Sobic004G169000--Sobic003G229300 Sobic004G042200 Sobic004G042200 Sobic004G169000--Sobic004G042200 Sobic005G106600 Sobic005G106600 Sobic004G169000--Sobic005G106600
Octagon: transcription factors


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