Gene annotation
Transcriptome id Sobic.004G306500.2,Sobic.004G306500.1
Synonym AGL22, Sb04g033930, SVP
Functional annotation OsMADS22 - MADS-box family gene with MIKCc type-box, expressed
UniProt A0A194YTJ1 , A0A194YSK3
Pfam PF01486 PF00319
Panther DB PTHR11945 PTHR11945:SF171
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G22540 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os02g52340.1 : OsMADS22 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a022199 , Zm00025a033110
Brachypodium KQK01785 , KQK23235 , KQK23234 , KQK23236 , KQK23233 , PNT76212
Barley HORVU7Hr1G036130.23 , HORVU7Hr1G036130.22 , HORVU7Hr1G036130.21 , HORVU7Hr1G036130.25 , HORVU7Hr1G036130.24 , HORVU4Hr1G077850.3 , HORVU4Hr1G077850.2 , HORVU4Hr1G077850.7 , HORVU4Hr1G077850.6 , HORVU4Hr1G077850.5 , HORVU4Hr1G077850.4 , HORVU4Hr1G077850.9 , HORVU4Hr1G077850.8 , HORVU6Hr1G077300.9 , HORVU6Hr1G077300.8 , HORVU6Hr1G077300.5 , HORVU6Hr1G077300.4 , HORVU6Hr1G077300.7 , HORVU6Hr1G077300.6 , HORVU6Hr1G077300.1 , HORVU6Hr1G077300.3 , HORVU6Hr1G077300.2 , HORVU4Hr1G077850.13 , HORVU4Hr1G077850.12 , HORVU4Hr1G077850.11 , HORVU4Hr1G077850.10 , HORVU4Hr1G077850.17 , HORVU4Hr1G077850.16 , HORVU4Hr1G077850.15 , HORVU4Hr1G077850.14 , HORVU6Hr1G077300.11 , HORVU6Hr1G077300.10
Wheat TraesCS7D02G176700 , TraesCS7B02G080300 , TraesCS7B02G080300 , TraesCS6A02G313800 , TraesCS6B02G343900 , TraesCS4D02G301100 , TraesCS6D02G293200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G481900 SAC domain containing protein, putative, expressed -
2 Sobic.002G187700 expressed protein -
3 Sobic.007G020600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux protein, putative, expressed -
4 Sobic.003G086900 C2 domain containing protein, putative, expressed -
5 Sobic.010G196500 zinc-binding protein, putative, expressed -
6 Sobic.009G161550 - -
7 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
8 Sobic.004G091100 nuclear protein ZAP-related, putative, expressed K17602: YLP motif-containing protein 1
9 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
10 Sobic.003G372500 DUF803 domain containing, putative, expressed -
11 Sobic.004G233200 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
12 Sobic.002G130800 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
13 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
14 Sobic.001G488700 sucrose transporter 2(PubMedID : 26465154)@sucrose transporter 2(PubMedID : 26465154)@sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
15 Sobic.001G100900 OsDegp14 - Putative Deg protease homologue, expressed -
16 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
17 Sobic.004G118200 reticulon domain containing protein, putative, expressed -
18 Sobic.005G182000 - -
19 Sobic.003G302800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
20 Sobic.003G221900 helix-loop-helix DNA-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic004G306500 Sobic004G306500 Sobic001G481900 Sobic001G481900 Sobic004G306500--Sobic001G481900 Sobic002G187700 Sobic002G187700 Sobic004G306500--Sobic002G187700 Sobic007G020600 Sobic007G020600 Sobic004G306500--Sobic007G020600 Sobic003G086900 Sobic003G086900 Sobic004G306500--Sobic003G086900 Sobic010G196500 Sobic010G196500 Sobic004G306500--Sobic010G196500 Sobic009G161550 Sobic009G161550 Sobic004G306500--Sobic009G161550 Sobic001G128300 Sobic001G128300 Sobic004G306500--Sobic001G128300 Sobic004G091100 Sobic004G091100 Sobic004G306500--Sobic004G091100 Sobic004G169000 Sobic004G169000 Sobic004G306500--Sobic004G169000 Sobic001G481900--Sobic002G187700 Sobic001G481900--Sobic004G306500 Sobic003G198800 Sobic003G198800 Sobic001G481900--Sobic003G198800 Sobic003G372500 Sobic003G372500 Sobic001G481900--Sobic003G372500 Sobic010G147100 Sobic010G147100 Sobic001G481900--Sobic010G147100 Sobic003G115900 Sobic003G115900 Sobic001G481900--Sobic003G115900 Sobic008G059100 Sobic008G059100 Sobic001G481900--Sobic008G059100 Sobic001G481900--Sobic001G128300 Sobic007G164000 Sobic007G164000 Sobic001G481900--Sobic007G164000 Sobic002G187700--Sobic001G481900 Sobic002G187700--Sobic004G306500 Sobic002G187700--Sobic008G059100 Sobic002G187700--Sobic003G198800 Sobic001G488700 Sobic001G488700 Sobic002G187700--Sobic001G488700 Sobic002G187700--Sobic003G115900 Sobic006G002300 Sobic006G002300 Sobic002G187700--Sobic006G002300 Sobic003G190400 Sobic003G190400 Sobic002G187700--Sobic003G190400 Sobic002G187700--Sobic004G169000 Sobic007G020600--Sobic004G306500 Sobic007G020600--Sobic003G372500 Sobic007G020600--Sobic001G481900 Sobic007G020600--Sobic001G128300 Sobic007G020600--Sobic002G187700 Sobic003G029700 Sobic003G029700 Sobic007G020600--Sobic003G029700 Sobic009G191000 Sobic009G191000 Sobic007G020600--Sobic009G191000 Sobic007G020600--Sobic003G198800 Sobic010G141800 Sobic010G141800 Sobic007G020600--Sobic010G141800 Sobic007G193700 Sobic007G193700 Sobic003G086900--Sobic007G193700 Sobic006G225900 Sobic006G225900 Sobic003G086900--Sobic006G225900 Sobic003G086900--Sobic010G196500 Sobic004G174200 Sobic004G174200 Sobic003G086900--Sobic004G174200 Sobic001G016700 Sobic001G016700 Sobic003G086900--Sobic001G016700 Sobic001G390800 Sobic001G390800 Sobic003G086900--Sobic001G390800 Sobic001G268200 Sobic001G268200 Sobic003G086900--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic003G086900--Sobic001G121200 Sobic003G422500 Sobic003G422500 Sobic003G086900--Sobic003G422500 Sobic010G196500--Sobic001G488700 Sobic001G500800 Sobic001G500800 Sobic010G196500--Sobic001G500800 Sobic010G196500--Sobic003G086900 Sobic002G193100 Sobic002G193100 Sobic010G196500--Sobic002G193100 Sobic007G084300 Sobic007G084300 Sobic010G196500--Sobic007G084300 Sobic002G386100 Sobic002G386100 Sobic010G196500--Sobic002G386100 Sobic008G146900 Sobic008G146900 Sobic010G196500--Sobic008G146900 Sobic001G381200 Sobic001G381200 Sobic010G196500--Sobic001G381200 Sobic010G196500--Sobic002G187700 Sobic009G139000 Sobic009G139000 Sobic009G161550--Sobic009G139000 Sobic009G161550--Sobic004G174200 Sobic009G161550--Sobic010G141800 Sobic005G182000 Sobic005G182000 Sobic009G161550--Sobic005G182000 Sobic009G161550--Sobic004G091100 Sobic004G263600 Sobic004G263600 Sobic009G161550--Sobic004G263600 Sobic002G034100 Sobic002G034100 Sobic009G161550--Sobic002G034100 Sobic001G365900 Sobic001G365900 Sobic009G161550--Sobic001G365900 Sobic006G142775 Sobic006G142775 Sobic009G161550--Sobic006G142775 Sobic009G165700 Sobic009G165700 Sobic001G128300--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic001G128300--Sobic001G451400 Sobic001G251200 Sobic001G251200 Sobic001G128300--Sobic001G251200 Sobic001G128300--Sobic004G091100 Sobic001G043100 Sobic001G043100 Sobic001G128300--Sobic001G043100 Sobic009G109925 Sobic009G109925 Sobic001G128300--Sobic009G109925 Sobic001G128300--Sobic003G198800 Sobic001G441400 Sobic001G441400 Sobic001G128300--Sobic001G441400 Sobic002G211800 Sobic002G211800 Sobic001G128300--Sobic002G211800 Sobic004G091100--Sobic009G165700 Sobic004G091100--Sobic001G451400 Sobic010G118950 Sobic010G118950 Sobic004G091100--Sobic010G118950 Sobic004G091100--Sobic009G191000 Sobic008G087866 Sobic008G087866 Sobic004G091100--Sobic008G087866 Sobic004G091100--Sobic001G128300 Sobic001G534700 Sobic001G534700 Sobic004G091100--Sobic001G534700 Sobic004G091100--Sobic003G422500 Sobic001G050200 Sobic001G050200 Sobic004G091100--Sobic001G050200 Sobic001G352400 Sobic001G352400 Sobic004G169000--Sobic001G352400 Sobic002G341000 Sobic002G341000 Sobic004G169000--Sobic002G341000 Sobic001G333800 Sobic001G333800 Sobic004G169000--Sobic001G333800 Sobic004G281800 Sobic004G281800 Sobic004G169000--Sobic004G281800 Sobic006G050700 Sobic006G050700 Sobic004G169000--Sobic006G050700 Sobic006G175800 Sobic006G175800 Sobic004G169000--Sobic006G175800 Sobic003G229300 Sobic003G229300 Sobic004G169000--Sobic003G229300 Sobic004G042200 Sobic004G042200 Sobic004G169000--Sobic004G042200 Sobic005G106600 Sobic005G106600 Sobic004G169000--Sobic005G106600
Octagon: transcription factors


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