Gene annotation
Transcriptome id Sobic.004G118200.3,Sobic.004G118200.4
Synonym RTNLB2, BTI2, Sb04g009850
Functional annotation reticulon domain containing protein, putative, expressed
UniProt A0A1Z5RM10 , A0A1Z5RME1
Pfam PF02453
Panther DB PTHR10994 PTHR10994:SF87
NCBI CDD KOG1792; Reticulon
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G11220 : VIRB2-interacting protein 2
RAP-DB (Rice) LOC_Os02g16620.1 : reticulon domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a019867
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G074300 smr domain containing protein, expressed -
2 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
3 Sobic.002G386100 expressed protein -
4 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.002G130800 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
6 Sobic.001G476700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
7 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
8 Sobic.010G013800 START domain containing protein, expressed -
9 Sobic.006G133900 NIN, putative, expressed -
10 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
11 Sobic.006G092400 calmodulin binding protein, putative, expressed -
12 Sobic.003G372500 DUF803 domain containing, putative, expressed -
13 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
14 Sobic.010G228400 zinc finger, C3HC4 type, domain containing protein, expressed -
15 Sobic.007G190000 expressed protein -
16 Sobic.003G221900 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
18 Sobic.007G198300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
19 Sobic.001G381200 vacuolar-sorting receptor precursor, putative, expressed -
20 Sobic.003G370700 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS1-18 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic004G118200 Sobic004G118200 Sobic010G074300 Sobic010G074300 Sobic004G118200--Sobic010G074300 Sobic003G229300 Sobic003G229300 Sobic004G118200--Sobic003G229300 Sobic002G386100 Sobic002G386100 Sobic004G118200--Sobic002G386100 Sobic001G268200 Sobic001G268200 Sobic004G118200--Sobic001G268200 Sobic002G130800 Sobic002G130800 Sobic004G118200--Sobic002G130800 Sobic001G476700 Sobic001G476700 Sobic004G118200--Sobic001G476700 Sobic010G147100 Sobic010G147100 Sobic004G118200--Sobic010G147100 Sobic010G013800 Sobic010G013800 Sobic004G118200--Sobic010G013800 Sobic006G133900 Sobic006G133900 Sobic004G118200--Sobic006G133900 Sobic010G074300--Sobic010G147100 Sobic010G074300--Sobic004G118200 Sobic007G190000 Sobic007G190000 Sobic010G074300--Sobic007G190000 Sobic001G080700 Sobic001G080700 Sobic010G074300--Sobic001G080700 Sobic002G311100 Sobic002G311100 Sobic010G074300--Sobic002G311100 Sobic010G131900 Sobic010G131900 Sobic010G074300--Sobic010G131900 Sobic009G074400 Sobic009G074400 Sobic010G074300--Sobic009G074400 Sobic003G316500 Sobic003G316500 Sobic010G074300--Sobic003G316500 Sobic010G074300--Sobic001G268200 Sobic003G191700 Sobic003G191700 Sobic003G229300--Sobic003G191700 Sobic010G176200 Sobic010G176200 Sobic003G229300--Sobic010G176200 Sobic003G229300--Sobic006G133900 Sobic004G042200 Sobic004G042200 Sobic003G229300--Sobic004G042200 Sobic001G169900 Sobic001G169900 Sobic003G229300--Sobic001G169900 Sobic008G115900 Sobic008G115900 Sobic003G229300--Sobic008G115900 Sobic007G198300 Sobic007G198300 Sobic003G229300--Sobic007G198300 Sobic003G262200 Sobic003G262200 Sobic003G229300--Sobic003G262200 Sobic003G222900 Sobic003G222900 Sobic003G229300--Sobic003G222900 Sobic004G179300 Sobic004G179300 Sobic002G386100--Sobic004G179300 Sobic002G386100--Sobic004G118200 Sobic010G196500 Sobic010G196500 Sobic002G386100--Sobic010G196500 Sobic002G386100--Sobic001G476700 Sobic002G187700 Sobic002G187700 Sobic002G386100--Sobic002G187700 Sobic002G386100--Sobic007G190000 Sobic003G372500 Sobic003G372500 Sobic002G386100--Sobic003G372500 Sobic002G128200 Sobic002G128200 Sobic002G386100--Sobic002G128200 Sobic001G488700 Sobic001G488700 Sobic002G386100--Sobic001G488700 Sobic001G390800 Sobic001G390800 Sobic001G268200--Sobic001G390800 Sobic010G013200 Sobic010G013200 Sobic001G268200--Sobic010G013200 Sobic001G268200--Sobic010G147100 Sobic003G313500 Sobic003G313500 Sobic001G268200--Sobic003G313500 Sobic001G121200 Sobic001G121200 Sobic001G268200--Sobic001G121200 Sobic010G139600 Sobic010G139600 Sobic001G268200--Sobic010G139600 Sobic001G085300 Sobic001G085300 Sobic001G268200--Sobic001G085300 Sobic001G194200 Sobic001G194200 Sobic001G268200--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic001G268200--Sobic009G053900 Sobic006G092400 Sobic006G092400 Sobic002G130800--Sobic006G092400 Sobic001G137100 Sobic001G137100 Sobic002G130800--Sobic001G137100 Sobic002G130800--Sobic004G118200 Sobic002G130800--Sobic010G147100 Sobic006G090500 Sobic006G090500 Sobic002G130800--Sobic006G090500 Sobic010G228400 Sobic010G228400 Sobic002G130800--Sobic010G228400 Sobic004G233200 Sobic004G233200 Sobic002G130800--Sobic004G233200 Sobic009G217100 Sobic009G217100 Sobic002G130800--Sobic009G217100 Sobic001G481900 Sobic001G481900 Sobic002G130800--Sobic001G481900 Sobic007G160700 Sobic007G160700 Sobic001G476700--Sobic007G160700 Sobic004G103000 Sobic004G103000 Sobic001G476700--Sobic004G103000 Sobic004G169000 Sobic004G169000 Sobic001G476700--Sobic004G169000 Sobic001G476700--Sobic004G118200 Sobic001G476700--Sobic003G229300 Sobic001G476700--Sobic007G190000 Sobic001G476700--Sobic010G074300 Sobic001G476700--Sobic002G386100 Sobic001G476700--Sobic004G179300 Sobic010G147100--Sobic003G316500 Sobic010G278200 Sobic010G278200 Sobic010G147100--Sobic010G278200 Sobic010G147100--Sobic010G074300 Sobic010G147100--Sobic003G313500 Sobic010G147100--Sobic001G390800 Sobic010G147100--Sobic002G311100 Sobic010G147100--Sobic009G053900 Sobic010G147100--Sobic001G268200 Sobic003G118200 Sobic003G118200 Sobic010G147100--Sobic003G118200 Sobic004G341900 Sobic004G341900 Sobic010G013800--Sobic004G341900 Sobic003G029700 Sobic003G029700 Sobic010G013800--Sobic003G029700 Sobic008G188900 Sobic008G188900 Sobic010G013800--Sobic008G188900 Sobic001G318432 Sobic001G318432 Sobic010G013800--Sobic001G318432 Sobic001G214300 Sobic001G214300 Sobic010G013800--Sobic001G214300 Sobic009G191000 Sobic009G191000 Sobic010G013800--Sobic009G191000 Sobic010G013800--Sobic003G229300 Sobic006G048600 Sobic006G048600 Sobic010G013800--Sobic006G048600 Sobic002G411600 Sobic002G411600 Sobic010G013800--Sobic002G411600 Sobic004G181600 Sobic004G181600 Sobic006G133900--Sobic004G181600 Sobic001G454500 Sobic001G454500 Sobic006G133900--Sobic001G454500 Sobic003G155100 Sobic003G155100 Sobic006G133900--Sobic003G155100 Sobic006G219600 Sobic006G219600 Sobic006G133900--Sobic006G219600 Sobic003G370700 Sobic003G370700 Sobic006G133900--Sobic003G370700 Sobic002G104100 Sobic002G104100 Sobic006G133900--Sobic002G104100 Sobic008G130100 Sobic008G130100 Sobic006G133900--Sobic008G130100 Sobic006G065600 Sobic006G065600 Sobic006G133900--Sobic006G065600 Sobic006G133900--Sobic003G191700
Octagon: transcription factors


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