Gene annotation
Transcriptome id Sobic.010G228400.1
Synonym Sb10g027165
Functional annotation zinc finger, C3HC4 type, domain containing protein, expressed
UniProt C5Z7U0
Pfam PF12906
Panther DB PTHR23012 PTHR23012:SF25
NCBI CDD KOG1609; Protein involved in mRNA turnover and stability
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G60580 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g46366.1 : zinc finger, C3HC4 type, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018047
Brachypodium KQK17125
Barley HORVU0Hr1G022270.11 , HORVU0Hr1G022270.10 , HORVU0Hr1G022270.12 , HORVU0Hr1G022270.9 , HORVU0Hr1G022270.8 , HORVU0Hr1G022270.1 , HORVU0Hr1G022270.3 , HORVU0Hr1G022270.5 , HORVU0Hr1G022270.4 , HORVU0Hr1G022270.7 , HORVU0Hr1G022270.6
Wheat TraesCS7B02G363900 , TraesCS7B02G363900 , TraesCS7A02G463200 , TraesCS7D02G451000 , TraesCS7D02G451000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G107600 - K18328: lariat debranching enzyme
2 Sobic.001G137100 homeodomain protein, putative, expressed -
3 Sobic.003G365300 sorting nexin 1, putative, expressed K17917: sorting nexin-1/2
4 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
5 Sobic.002G130800 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
6 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
8 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
9 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
10 Sobic.009G068500 expressed protein -
11 Sobic.004G118200 reticulon domain containing protein, putative, expressed -
12 Sobic.002G111000 peptidase, putative, expressed -
13 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
14 Sobic.001G203900 OsGrx_S17 - glutaredoxin subgroup II, expressed -
15 Sobic.003G115900 lissencephaly type-1-like homology motif, putative, expressed -
16 Sobic.006G082400 expressed protein -
17 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
18 Sobic.002G427050 - -
19 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
20 Sobic.004G091100 nuclear protein ZAP-related, putative, expressed K17602: YLP motif-containing protein 1


Gene co-expression network
sample Sobic010G228400 Sobic010G228400 Sobic001G107600 Sobic001G107600 Sobic010G228400--Sobic001G107600 Sobic001G137100 Sobic001G137100 Sobic010G228400--Sobic001G137100 Sobic003G365300 Sobic003G365300 Sobic010G228400--Sobic003G365300 Sobic001G390800 Sobic001G390800 Sobic010G228400--Sobic001G390800 Sobic002G130800 Sobic002G130800 Sobic010G228400--Sobic002G130800 Sobic001G268200 Sobic001G268200 Sobic010G228400--Sobic001G268200 Sobic001G007000 Sobic001G007000 Sobic010G228400--Sobic001G007000 Sobic010G147100 Sobic010G147100 Sobic010G228400--Sobic010G147100 Sobic008G089100 Sobic008G089100 Sobic010G228400--Sobic008G089100 Sobic001G050200 Sobic001G050200 Sobic001G107600--Sobic001G050200 Sobic001G107600--Sobic010G228400 Sobic001G107600--Sobic001G390800 Sobic001G107600--Sobic003G365300 Sobic006G115600 Sobic006G115600 Sobic001G107600--Sobic006G115600 Sobic004G264400 Sobic004G264400 Sobic001G107600--Sobic004G264400 Sobic002G427050 Sobic002G427050 Sobic001G107600--Sobic002G427050 Sobic003G372500 Sobic003G372500 Sobic001G107600--Sobic003G372500 Sobic010G227100 Sobic010G227100 Sobic001G107600--Sobic010G227100 Sobic001G137100--Sobic001G390800 Sobic007G024700 Sobic007G024700 Sobic001G137100--Sobic007G024700 Sobic001G137100--Sobic010G228400 Sobic002G132000 Sobic002G132000 Sobic001G137100--Sobic002G132000 Sobic001G270400 Sobic001G270400 Sobic001G137100--Sobic001G270400 Sobic001G137100--Sobic002G130800 Sobic009G094300 Sobic009G094300 Sobic001G137100--Sobic009G094300 Sobic002G111000 Sobic002G111000 Sobic001G137100--Sobic002G111000 Sobic001G137100--Sobic002G427050 Sobic003G365300--Sobic001G390800 Sobic006G002000 Sobic006G002000 Sobic003G365300--Sobic006G002000 Sobic006G082400 Sobic006G082400 Sobic003G365300--Sobic006G082400 Sobic004G275700 Sobic004G275700 Sobic003G365300--Sobic004G275700 Sobic003G365300--Sobic002G111000 Sobic001G203900 Sobic001G203900 Sobic003G365300--Sobic001G203900 Sobic009G068500 Sobic009G068500 Sobic003G365300--Sobic009G068500 Sobic003G006300 Sobic003G006300 Sobic003G365300--Sobic003G006300 Sobic003G365300--Sobic001G107600 Sobic001G390800--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic001G390800--Sobic001G121200 Sobic003G313500 Sobic003G313500 Sobic001G390800--Sobic003G313500 Sobic010G205800 Sobic010G205800 Sobic001G390800--Sobic010G205800 Sobic001G085300 Sobic001G085300 Sobic001G390800--Sobic001G085300 Sobic001G390800--Sobic010G147100 Sobic007G075400 Sobic007G075400 Sobic001G390800--Sobic007G075400 Sobic010G139600 Sobic010G139600 Sobic001G390800--Sobic010G139600 Sobic001G390800--Sobic001G050200 Sobic006G092400 Sobic006G092400 Sobic002G130800--Sobic006G092400 Sobic002G130800--Sobic001G137100 Sobic004G118200 Sobic004G118200 Sobic002G130800--Sobic004G118200 Sobic002G130800--Sobic010G147100 Sobic006G090500 Sobic006G090500 Sobic002G130800--Sobic006G090500 Sobic002G130800--Sobic010G228400 Sobic004G233200 Sobic004G233200 Sobic002G130800--Sobic004G233200 Sobic009G217100 Sobic009G217100 Sobic002G130800--Sobic009G217100 Sobic001G481900 Sobic001G481900 Sobic002G130800--Sobic001G481900 Sobic001G268200--Sobic001G390800 Sobic010G013200 Sobic010G013200 Sobic001G268200--Sobic010G013200 Sobic001G268200--Sobic010G147100 Sobic001G268200--Sobic003G313500 Sobic001G268200--Sobic001G121200 Sobic001G268200--Sobic010G139600 Sobic001G268200--Sobic001G085300 Sobic001G194200 Sobic001G194200 Sobic001G268200--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic001G268200--Sobic009G053900 Sobic001G007000--Sobic009G068500 Sobic010G251000 Sobic010G251000 Sobic001G007000--Sobic010G251000 Sobic001G392300 Sobic001G392300 Sobic001G007000--Sobic001G392300 Sobic002G359400 Sobic002G359400 Sobic001G007000--Sobic002G359400 Sobic004G353200 Sobic004G353200 Sobic001G007000--Sobic004G353200 Sobic001G007000--Sobic010G205800 Sobic008G046500 Sobic008G046500 Sobic001G007000--Sobic008G046500 Sobic001G080700 Sobic001G080700 Sobic001G007000--Sobic001G080700 Sobic001G031100 Sobic001G031100 Sobic001G007000--Sobic001G031100 Sobic003G316500 Sobic003G316500 Sobic010G147100--Sobic003G316500 Sobic010G278200 Sobic010G278200 Sobic010G147100--Sobic010G278200 Sobic010G074300 Sobic010G074300 Sobic010G147100--Sobic010G074300 Sobic010G147100--Sobic003G313500 Sobic010G147100--Sobic001G390800 Sobic002G311100 Sobic002G311100 Sobic010G147100--Sobic002G311100 Sobic010G147100--Sobic009G053900 Sobic010G147100--Sobic001G268200 Sobic003G118200 Sobic003G118200 Sobic010G147100--Sobic003G118200 Sobic002G045600 Sobic002G045600 Sobic008G089100--Sobic002G045600 Sobic001G207000 Sobic001G207000 Sobic008G089100--Sobic001G207000 Sobic008G089100--Sobic001G392300 Sobic003G408600 Sobic003G408600 Sobic008G089100--Sobic003G408600 Sobic008G089100--Sobic003G313500 Sobic008G089100--Sobic001G194200 Sobic008G089100--Sobic001G390800 Sobic004G135400 Sobic004G135400 Sobic008G089100--Sobic004G135400 Sobic003G164200 Sobic003G164200 Sobic008G089100--Sobic003G164200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.