Gene annotation
Transcriptome id Sobic.003G115900.1,Sobic.003G115900.2
Synonym Sb03g009770, TPR2
Functional annotation lissencephaly type-1-like homology motif, putative, expressed
UniProt A0A1B6Q2Q4 , A0A1B6Q2N9
Pfam PF00400
Panther DB PTHR22847 PTHR22847:SF424
NCBI CDD KOG0266; WD40 repeat-containing protein KOG0318WD40 repeat stress protein/actin interacting protein KOG0319WD40-repeat-containing subunit of the 18S rRNA processing complex KOG0293WD40 repeat-containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G16830 : TOPLESS-related 2
RAP-DB (Rice) LOC_Os01g15020.1 : lissencephaly type-1-like homology motif, putative, expressed
MaizeGDB (Corn) Zm00025a037462 , Zm00025a010849 , Zm00025a035336 , Zm00025a023948
Brachypodium KQK03640 , KQK03641 , KQK03639
Barley HORVU3Hr1G035170.5 , HORVU3Hr1G035170.4 , HORVU3Hr1G035170.7 , HORVU3Hr1G035170.6 , HORVU3Hr1G035170.1 , HORVU3Hr1G035170.3 , HORVU3Hr1G035170.2 , HORVU3Hr1G035170.9 , HORVU3Hr1G035170.8 , HORVU0Hr1G014790.1 , HORVU6Hr1G002130.8 , HORVU6Hr1G002130.9 , HORVU6Hr1G002130.6 , HORVU6Hr1G002130.4 , HORVU6Hr1G002130.5 , HORVU6Hr1G002130.2 , HORVU6Hr1G002130.3 , HORVU6Hr1G002130.1 , HORVU3Hr1G035170.20 , HORVU3Hr1G035170.21 , HORVU5Hr1G114130.1 , HORVU5Hr1G114130.3 , HORVU5Hr1G114130.2 , HORVU0Hr1G014790.2 , HORVU3Hr1G035170.11 , HORVU3Hr1G035170.10 , HORVU3Hr1G035170.13 , HORVU3Hr1G035170.12 , HORVU3Hr1G035170.15 , HORVU3Hr1G035170.14 , HORVU3Hr1G035170.17 , HORVU3Hr1G035170.16 , HORVU3Hr1G035170.19 , HORVU3Hr1G035170.18 , HORVU6Hr1G036010.6 , HORVU6Hr1G036010.7 , HORVU6Hr1G036010.4 , HORVU6Hr1G036010.5 , HORVU6Hr1G036010.2 , HORVU6Hr1G036010.3 , HORVU6Hr1G036010.1 , HORVU6Hr1G036010.8 , HORVU6Hr1G036010.9 , HORVU6Hr1G002130.10 , HORVU4Hr1G034270.1
Wheat TraesCS6D02G082100 , TraesCS6D02G082100 , TraesCS6D02G082100 , TraesCS6D02G082100 , TraesCS6D02G082100 , TraesCS6D02G082100 , TraesCS6D02G082100 , TraesCS6D02G082100 , TraesCS3A02G173300 , TraesCS3A02G173300 , TraesCS3A02G173300 , TraesCS3A02G173300 , TraesCS3A02G173300 , TraesCS3D02G179800 , TraesCS3D02G179800 , TraesCSU02G071400 , TraesCSU02G071400 , TraesCS3B02G204200 , TraesCS3B02G204200 , TraesCS3B02G204200 , TraesCS3B02G204200 , TraesCS3B02G204200 , TraesCS3B02G204200 , TraesCS3D02G179800 , TraesCS3D02G179800 , TraesCS3D02G179800 , TraesCS6A02G100500 , TraesCS6A02G100500 , TraesCS6A02G100500 , TraesCS6A02G100500 , TraesCS6A02G100500 , TraesCS6A02G100500
Populus PNS94129 , PNT06097 , PNT06096 , PNS94130 , PNS94131


JBrowse

Open New Page


cDNA sequences
Sobic.003G115900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G187700 expressed protein -
2 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
3 Sobic.001G381600 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
4 Sobic.006G002300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.004G091100 nuclear protein ZAP-related, putative, expressed K17602: YLP motif-containing protein 1
6 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
7 Sobic.001G481900 SAC domain containing protein, putative, expressed -
8 Sobic.001G107600 - K18328: lariat debranching enzyme
9 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
10 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
11 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
12 Sobic.001G305500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
14 Sobic.003G372500 DUF803 domain containing, putative, expressed -
15 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
16 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
17 Sobic.001G050200 expressed protein -
18 Sobic.002G128200 Regulator of chromosome condensation (RCC1) family protein(PubMedID : 26465154)@Regulator of chromosome condensation domain containing protein, expressed -
19 Sobic.003G190400 rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed -
20 Sobic.009G191000 MATH domain containing protein, expressed -


Gene co-expression network
sample Sobic003G115900 Sobic003G115900 Sobic002G187700 Sobic002G187700 Sobic003G115900--Sobic002G187700 Sobic003G198800 Sobic003G198800 Sobic003G115900--Sobic003G198800 Sobic001G381600 Sobic001G381600 Sobic003G115900--Sobic001G381600 Sobic006G002300 Sobic006G002300 Sobic003G115900--Sobic006G002300 Sobic004G091100 Sobic004G091100 Sobic003G115900--Sobic004G091100 Sobic009G074400 Sobic009G074400 Sobic003G115900--Sobic009G074400 Sobic001G481900 Sobic001G481900 Sobic003G115900--Sobic001G481900 Sobic001G107600 Sobic001G107600 Sobic003G115900--Sobic001G107600 Sobic010G139600 Sobic010G139600 Sobic003G115900--Sobic010G139600 Sobic002G187700--Sobic001G481900 Sobic004G306500 Sobic004G306500 Sobic002G187700--Sobic004G306500 Sobic008G059100 Sobic008G059100 Sobic002G187700--Sobic008G059100 Sobic002G187700--Sobic003G198800 Sobic001G488700 Sobic001G488700 Sobic002G187700--Sobic001G488700 Sobic002G187700--Sobic003G115900 Sobic002G187700--Sobic006G002300 Sobic003G190400 Sobic003G190400 Sobic002G187700--Sobic003G190400 Sobic004G169000 Sobic004G169000 Sobic002G187700--Sobic004G169000 Sobic001G534700 Sobic001G534700 Sobic003G198800--Sobic001G534700 Sobic003G198800--Sobic009G074400 Sobic003G275700 Sobic003G275700 Sobic003G198800--Sobic003G275700 Sobic006G257800 Sobic006G257800 Sobic003G198800--Sobic006G257800 Sobic003G155100 Sobic003G155100 Sobic003G198800--Sobic003G155100 Sobic001G128300 Sobic001G128300 Sobic003G198800--Sobic001G128300 Sobic003G198800--Sobic001G481900 Sobic008G151100 Sobic008G151100 Sobic003G198800--Sobic008G151100 Sobic002G411600 Sobic002G411600 Sobic003G198800--Sobic002G411600 Sobic001G381600--Sobic008G151100 Sobic009G201300 Sobic009G201300 Sobic001G381600--Sobic009G201300 Sobic007G198300 Sobic007G198300 Sobic001G381600--Sobic007G198300 Sobic001G381600--Sobic006G002300 Sobic001G381600--Sobic003G115900 Sobic001G212300 Sobic001G212300 Sobic001G381600--Sobic001G212300 Sobic009G038900 Sobic009G038900 Sobic001G381600--Sobic009G038900 Sobic001G381600--Sobic003G198800 Sobic001G381600--Sobic003G155100 Sobic006G002300--Sobic003G198800 Sobic006G002300--Sobic001G381600 Sobic006G002300--Sobic002G187700 Sobic006G002300--Sobic003G115900 Sobic002G128200 Sobic002G128200 Sobic006G002300--Sobic002G128200 Sobic006G002300--Sobic007G198300 Sobic003G301900 Sobic003G301900 Sobic006G002300--Sobic003G301900 Sobic003G229300 Sobic003G229300 Sobic006G002300--Sobic003G229300 Sobic001G375100 Sobic001G375100 Sobic006G002300--Sobic001G375100 Sobic009G165700 Sobic009G165700 Sobic004G091100--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic004G091100--Sobic001G451400 Sobic010G118950 Sobic010G118950 Sobic004G091100--Sobic010G118950 Sobic009G191000 Sobic009G191000 Sobic004G091100--Sobic009G191000 Sobic008G087866 Sobic008G087866 Sobic004G091100--Sobic008G087866 Sobic004G091100--Sobic001G128300 Sobic004G091100--Sobic001G534700 Sobic003G422500 Sobic003G422500 Sobic004G091100--Sobic003G422500 Sobic001G050200 Sobic001G050200 Sobic004G091100--Sobic001G050200 Sobic003G316500 Sobic003G316500 Sobic009G074400--Sobic003G316500 Sobic009G074400--Sobic001G534700 Sobic009G074400--Sobic003G155100 Sobic009G074400--Sobic003G198800 Sobic002G311100 Sobic002G311100 Sobic009G074400--Sobic002G311100 Sobic006G051800 Sobic006G051800 Sobic009G074400--Sobic006G051800 Sobic006G219600 Sobic006G219600 Sobic009G074400--Sobic006G219600 Sobic008G001200 Sobic008G001200 Sobic009G074400--Sobic008G001200 Sobic004G001500 Sobic004G001500 Sobic009G074400--Sobic004G001500 Sobic001G481900--Sobic002G187700 Sobic001G481900--Sobic004G306500 Sobic001G481900--Sobic003G198800 Sobic003G372500 Sobic003G372500 Sobic001G481900--Sobic003G372500 Sobic010G147100 Sobic010G147100 Sobic001G481900--Sobic010G147100 Sobic001G481900--Sobic003G115900 Sobic001G481900--Sobic008G059100 Sobic001G481900--Sobic001G128300 Sobic007G164000 Sobic007G164000 Sobic001G481900--Sobic007G164000 Sobic001G107600--Sobic001G050200 Sobic010G228400 Sobic010G228400 Sobic001G107600--Sobic010G228400 Sobic001G390800 Sobic001G390800 Sobic001G107600--Sobic001G390800 Sobic003G365300 Sobic003G365300 Sobic001G107600--Sobic003G365300 Sobic006G115600 Sobic006G115600 Sobic001G107600--Sobic006G115600 Sobic004G264400 Sobic004G264400 Sobic001G107600--Sobic004G264400 Sobic002G427050 Sobic002G427050 Sobic001G107600--Sobic002G427050 Sobic001G107600--Sobic003G372500 Sobic010G227100 Sobic010G227100 Sobic001G107600--Sobic010G227100 Sobic007G075400 Sobic007G075400 Sobic010G139600--Sobic007G075400 Sobic002G146300 Sobic002G146300 Sobic010G139600--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic010G139600--Sobic003G205200 Sobic008G098900 Sobic008G098900 Sobic010G139600--Sobic008G098900 Sobic003G313500 Sobic003G313500 Sobic010G139600--Sobic003G313500 Sobic005G001000 Sobic005G001000 Sobic010G139600--Sobic005G001000 Sobic001G194200 Sobic001G194200 Sobic010G139600--Sobic001G194200 Sobic010G139600--Sobic003G422500 Sobic001G370900 Sobic001G370900 Sobic010G139600--Sobic001G370900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.