Gene annotation
Transcriptome id Sobic.002G128200.2,Sobic.002G128200.1
Synonym Sb02g011030
Functional annotation Regulator of chromosome condensation (RCC1) family protein (PubMedID : 26465154)
Regulator of chromosome condensation domain containing protein, expressed
UniProt A0A1B6QAZ2 , A0A1B6QAW8
Pfam PF13540 PF00415
Panther DB PTHR22870 PTHR22870:SF209
NCBI CDD KOG1427; Uncharacterized conserved protein, contains RCC1 domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G15430 : Regulator of chromosome condensation (RCC1) family protein
RAP-DB (Rice) LOC_Os07g27490.1 : Regulator of chromosome condensation domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045871 , Zm00025a013540
Brachypodium KQK16394 , KQK16392 , KQK16393 , KQK16391
Barley HORVU0Hr1G004420.1 , HORVU0Hr1G004420.2 , HORVU0Hr1G004430.1
Wheat TraesCS2A02G236300 , TraesCS2A02G236300 , TraesCS2A02G236300 , TraesCS2A02G236300 , TraesCS2D02G241400 , TraesCS2D02G241400 , TraesCS2D02G241400 , TraesCS2B02G254900 , TraesCS2B02G254900
Populus -


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cDNA sequences
Sobic.002G128200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G149700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
2 Sobic.006G104600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G002300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.006G087700 T-complex protein 11, putative, expressed -
5 Sobic.004G179300 chloride channel protein, putative, expressed K05016: chloride channel 7
6 Sobic.003G301900 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
7 Sobic.009G011600 expressed protein -
8 Sobic.001G517800 NIN, putative, expressed -
9 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
10 Sobic.010G020800 aminotransferase, classes I and II, domain containing protein, expressed K14270: aminotransferase
11 Sobic.006G166100 GATA zinc finger domain containing protein, expressed -
12 Sobic.002G262300 lecithine cholesterol acyltransferase, putative, expressed -
13 Sobic.010G227800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@metal transporter Nramp6, putative, expressed -
14 Sobic.003G398100 antigen peptide transporter-like 1, chloroplast precursor, putative, expressed -
15 Sobic.003G115900 lissencephaly type-1-like homology motif, putative, expressed -
16 Sobic.002G386100 expressed protein -
17 Sobic.001G305500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.002G187700 expressed protein -
19 Sobic.004G034600 hydrolase, alpha/beta fold family domain containing protein, expressed -
20 Sobic.006G135600 Up-regulated by silicon application under drought stress (PubMedID : 24813726)@S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed K01611: speD, S-adenosylmethionine decarboxylase


Gene co-expression network
sample Sobic002G128200 Sobic002G128200 Sobic005G149700 Sobic005G149700 Sobic002G128200--Sobic005G149700 Sobic006G104600 Sobic006G104600 Sobic002G128200--Sobic006G104600 Sobic006G002300 Sobic006G002300 Sobic002G128200--Sobic006G002300 Sobic006G087700 Sobic006G087700 Sobic002G128200--Sobic006G087700 Sobic004G179300 Sobic004G179300 Sobic002G128200--Sobic004G179300 Sobic003G301900 Sobic003G301900 Sobic002G128200--Sobic003G301900 Sobic009G011600 Sobic009G011600 Sobic002G128200--Sobic009G011600 Sobic001G517800 Sobic001G517800 Sobic002G128200--Sobic001G517800 Sobic001G375100 Sobic001G375100 Sobic002G128200--Sobic001G375100 Sobic004G034600 Sobic004G034600 Sobic005G149700--Sobic004G034600 Sobic001G504900 Sobic001G504900 Sobic005G149700--Sobic001G504900 Sobic002G266000 Sobic002G266000 Sobic005G149700--Sobic002G266000 Sobic005G149700--Sobic002G128200 Sobic005G149700--Sobic006G104600 Sobic005G149700--Sobic009G011600 Sobic009G207600 Sobic009G207600 Sobic005G149700--Sobic009G207600 Sobic003G174301 Sobic003G174301 Sobic005G149700--Sobic003G174301 Sobic003G398100 Sobic003G398100 Sobic005G149700--Sobic003G398100 Sobic001G282600 Sobic001G282600 Sobic006G104600--Sobic001G282600 Sobic006G104600--Sobic002G266000 Sobic003G320700 Sobic003G320700 Sobic006G104600--Sobic003G320700 Sobic001G305500 Sobic001G305500 Sobic006G104600--Sobic001G305500 Sobic006G104600--Sobic002G128200 Sobic003G322700 Sobic003G322700 Sobic006G104600--Sobic003G322700 Sobic006G199000 Sobic006G199000 Sobic006G104600--Sobic006G199000 Sobic006G104600--Sobic005G149700 Sobic004G225200 Sobic004G225200 Sobic006G104600--Sobic004G225200 Sobic003G198800 Sobic003G198800 Sobic006G002300--Sobic003G198800 Sobic001G381600 Sobic001G381600 Sobic006G002300--Sobic001G381600 Sobic002G187700 Sobic002G187700 Sobic006G002300--Sobic002G187700 Sobic003G115900 Sobic003G115900 Sobic006G002300--Sobic003G115900 Sobic006G002300--Sobic002G128200 Sobic007G198300 Sobic007G198300 Sobic006G002300--Sobic007G198300 Sobic006G002300--Sobic003G301900 Sobic003G229300 Sobic003G229300 Sobic006G002300--Sobic003G229300 Sobic006G002300--Sobic001G375100 Sobic007G075400 Sobic007G075400 Sobic006G087700--Sobic007G075400 Sobic006G087700--Sobic003G322700 Sobic006G233500 Sobic006G233500 Sobic006G087700--Sobic006G233500 Sobic010G139600 Sobic010G139600 Sobic006G087700--Sobic010G139600 Sobic006G087700--Sobic003G301900 Sobic006G087700--Sobic003G320700 Sobic006G204900 Sobic006G204900 Sobic006G087700--Sobic006G204900 Sobic006G087700--Sobic002G128200 Sobic006G043600 Sobic006G043600 Sobic006G087700--Sobic006G043600 Sobic002G386100 Sobic002G386100 Sobic004G179300--Sobic002G386100 Sobic007G190000 Sobic007G190000 Sobic004G179300--Sobic007G190000 Sobic004G179300--Sobic002G128200 Sobic004G189200 Sobic004G189200 Sobic004G179300--Sobic004G189200 Sobic004G179300--Sobic006G002300 Sobic004G179300--Sobic002G187700 Sobic001G476700 Sobic001G476700 Sobic004G179300--Sobic001G476700 Sobic004G179300--Sobic003G301900 Sobic010G020800 Sobic010G020800 Sobic004G179300--Sobic010G020800 Sobic002G146300 Sobic002G146300 Sobic003G301900--Sobic002G146300 Sobic003G301900--Sobic001G517800 Sobic003G301900--Sobic010G139600 Sobic003G190400 Sobic003G190400 Sobic003G301900--Sobic003G190400 Sobic005G149200 Sobic005G149200 Sobic003G301900--Sobic005G149200 Sobic003G301900--Sobic003G320700 Sobic006G219600 Sobic006G219600 Sobic003G301900--Sobic006G219600 Sobic003G301900--Sobic006G087700 Sobic003G301900--Sobic007G190000 Sobic009G011600--Sobic004G034600 Sobic009G011600--Sobic001G517800 Sobic001G496100 Sobic001G496100 Sobic009G011600--Sobic001G496100 Sobic009G011600--Sobic005G149700 Sobic009G011600--Sobic010G020800 Sobic007G169300 Sobic007G169300 Sobic009G011600--Sobic007G169300 Sobic002G249300 Sobic002G249300 Sobic009G011600--Sobic002G249300 Sobic009G011600--Sobic005G149200 Sobic010G043100 Sobic010G043100 Sobic009G011600--Sobic010G043100 Sobic001G459600 Sobic001G459600 Sobic001G517800--Sobic001G459600 Sobic001G517800--Sobic003G301900 Sobic001G517800--Sobic004G034600 Sobic001G517800--Sobic010G020800 Sobic001G517800--Sobic009G011600 Sobic001G517800--Sobic005G149200 Sobic001G517800--Sobic003G320700 Sobic001G517800--Sobic003G322700 Sobic001G517800--Sobic002G146300 Sobic003G155100 Sobic003G155100 Sobic001G375100--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic001G375100--Sobic008G001200 Sobic001G375100--Sobic005G149200 Sobic003G247500 Sobic003G247500 Sobic001G375100--Sobic003G247500 Sobic001G454500 Sobic001G454500 Sobic001G375100--Sobic001G454500 Sobic010G010700 Sobic010G010700 Sobic001G375100--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic001G375100--Sobic002G008900 Sobic001G375100--Sobic007G198300 Sobic005G001000 Sobic005G001000 Sobic001G375100--Sobic005G001000
Octagon: transcription factors


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