Gene annotation
Transcriptome id Sobic.010G227800.1
Synonym NRAMP1, Sb10g027130, ATNRAMP1, PMIT1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
metal transporter Nramp6, putative, expressed
UniProt C5Z7T5
Pfam PF01566
Panther DB PTHR11706 PTHR11706:SF33
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT1G80830 : natural resistance-associated macrophage protein 1
RAP-DB (Rice) LOC_Os06g46310.2 : metal transporter Nramp6, putative, expressed
MaizeGDB (Corn) Zm00025a018051
Brachypodium PNT75434 , PNT75433 , KQK17135 , KQK17134 , KQK17136 , KQK17131 , KQK17133 , KQK17132
Barley HORVU7Hr1G106570.4 , HORVU7Hr1G106570.5 , HORVU7Hr1G106570.6 , HORVU7Hr1G106570.7 , HORVU7Hr1G106570.1 , HORVU7Hr1G106570.2 , HORVU7Hr1G106570.3 , HORVU7Hr1G106570.8 , HORVU7Hr1G106570.9 , HORVU7Hr1G106570.24 , HORVU7Hr1G106570.23 , HORVU7Hr1G106570.22 , HORVU7Hr1G106570.21 , HORVU7Hr1G106570.20 , HORVU7Hr1G078330.1 , HORVU7Hr1G078330.2 , HORVU7Hr1G106570.17 , HORVU7Hr1G106570.14 , HORVU7Hr1G106570.15 , HORVU7Hr1G106570.12 , HORVU7Hr1G106570.13 , HORVU7Hr1G106570.10 , HORVU7Hr1G106570.11 , HORVU7Hr1G106570.18 , HORVU7Hr1G106570.19
Wheat TraesCS7D02G324000 , TraesCS7D02G451900 , TraesCS7D02G451900 , TraesCS7A02G464300 , TraesCS7A02G464300 , TraesCS7B02G364800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G128200 Regulator of chromosome condensation (RCC1) family protein(PubMedID : 26465154)@Regulator of chromosome condensation domain containing protein, expressed -
2 Sobic.007G201500 rabGAP/TBC domain-containing protein, putative, expressed K18469: TBC1 domain family member 5
3 Sobic.010G205100 Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
4 Sobic.010G217600 PHD-finger domain containing protein, putative, expressed -
5 Sobic.005G053200 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
6 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
7 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
8 Sobic.006G064100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
9 Sobic.003G021100 expressed protein -
10 Sobic.001G073500 5-nucleotidase domain-containing protein, putative, expressed -
11 Sobic.001G519900 ribonuclease protein, putative, expressed K12585: DIS3, exosome complex exonuclease DIS3/RRP44
12 Sobic.010G019000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized membrane protein, putative, expressed -
13 Sobic.004G057500 OsMADS1 - MADS-box family gene with MIKCc type-box, expressed -
14 Sobic.007G010700 OsFBL6 - F-box domain and LRR containing protein, expressed -
15 Sobic.006G240400 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.010G275700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
17 Sobic.005G149700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
18 Sobic.010G175400 - -
19 Sobic.006G002300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.006G135600 Up-regulated by silicon application under drought stress (PubMedID : 24813726)@S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed K01611: speD, S-adenosylmethionine decarboxylase


Gene co-expression network
sample Sobic010G227800 Sobic010G227800 Sobic002G128200 Sobic002G128200 Sobic010G227800--Sobic002G128200 Sobic007G201500 Sobic007G201500 Sobic010G227800--Sobic007G201500 Sobic010G205100 Sobic010G205100 Sobic010G227800--Sobic010G205100 Sobic010G217600 Sobic010G217600 Sobic010G227800--Sobic010G217600 Sobic005G053200 Sobic005G053200 Sobic010G227800--Sobic005G053200 Sobic001G375100 Sobic001G375100 Sobic010G227800--Sobic001G375100 Sobic002G305000 Sobic002G305000 Sobic010G227800--Sobic002G305000 Sobic006G064100 Sobic006G064100 Sobic010G227800--Sobic006G064100 Sobic003G021100 Sobic003G021100 Sobic010G227800--Sobic003G021100 Sobic005G149700 Sobic005G149700 Sobic002G128200--Sobic005G149700 Sobic006G104600 Sobic006G104600 Sobic002G128200--Sobic006G104600 Sobic006G002300 Sobic006G002300 Sobic002G128200--Sobic006G002300 Sobic006G087700 Sobic006G087700 Sobic002G128200--Sobic006G087700 Sobic004G179300 Sobic004G179300 Sobic002G128200--Sobic004G179300 Sobic003G301900 Sobic003G301900 Sobic002G128200--Sobic003G301900 Sobic009G011600 Sobic009G011600 Sobic002G128200--Sobic009G011600 Sobic001G517800 Sobic001G517800 Sobic002G128200--Sobic001G517800 Sobic002G128200--Sobic001G375100 Sobic001G073500 Sobic001G073500 Sobic007G201500--Sobic001G073500 Sobic006G222600 Sobic006G222600 Sobic007G201500--Sobic006G222600 Sobic010G210500 Sobic010G210500 Sobic007G201500--Sobic010G210500 Sobic007G201500--Sobic001G375100 Sobic007G201500--Sobic010G205100 Sobic007G201500--Sobic002G305000 Sobic010G176200 Sobic010G176200 Sobic007G201500--Sobic010G176200 Sobic003G354600 Sobic003G354600 Sobic007G201500--Sobic003G354600 Sobic008G130000 Sobic008G130000 Sobic007G201500--Sobic008G130000 Sobic010G205100--Sobic006G064100 Sobic010G085100 Sobic010G085100 Sobic010G205100--Sobic010G085100 Sobic001G531500 Sobic001G531500 Sobic010G205100--Sobic001G531500 Sobic001G073900 Sobic001G073900 Sobic010G205100--Sobic001G073900 Sobic009G038900 Sobic009G038900 Sobic010G205100--Sobic009G038900 Sobic003G036200 Sobic003G036200 Sobic010G205100--Sobic003G036200 Sobic005G101200 Sobic005G101200 Sobic010G205100--Sobic005G101200 Sobic002G404800 Sobic002G404800 Sobic010G205100--Sobic002G404800 Sobic003G332700 Sobic003G332700 Sobic010G205100--Sobic003G332700 Sobic010G019000 Sobic010G019000 Sobic010G217600--Sobic010G019000 Sobic004G334300 Sobic004G334300 Sobic010G217600--Sobic004G334300 Sobic001G303100 Sobic001G303100 Sobic010G217600--Sobic001G303100 Sobic001G381600 Sobic001G381600 Sobic010G217600--Sobic001G381600 Sobic001G066500 Sobic001G066500 Sobic010G217600--Sobic001G066500 Sobic010G217600--Sobic002G305000 Sobic009G255700 Sobic009G255700 Sobic010G217600--Sobic009G255700 Sobic010G217600--Sobic010G227800 Sobic004G244900 Sobic004G244900 Sobic010G217600--Sobic004G244900 Sobic007G010700 Sobic007G010700 Sobic005G053200--Sobic007G010700 Sobic004G070500 Sobic004G070500 Sobic005G053200--Sobic004G070500 Sobic002G249300 Sobic002G249300 Sobic005G053200--Sobic002G249300 Sobic003G174301 Sobic003G174301 Sobic005G053200--Sobic003G174301 Sobic001G000501 Sobic001G000501 Sobic005G053200--Sobic001G000501 Sobic009G248801 Sobic009G248801 Sobic005G053200--Sobic009G248801 Sobic005G133600 Sobic005G133600 Sobic005G053200--Sobic005G133600 Sobic005G053200--Sobic010G227800 Sobic005G089400 Sobic005G089400 Sobic005G053200--Sobic005G089400 Sobic003G155100 Sobic003G155100 Sobic001G375100--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic001G375100--Sobic008G001200 Sobic005G149200 Sobic005G149200 Sobic001G375100--Sobic005G149200 Sobic003G247500 Sobic003G247500 Sobic001G375100--Sobic003G247500 Sobic001G454500 Sobic001G454500 Sobic001G375100--Sobic001G454500 Sobic010G010700 Sobic010G010700 Sobic001G375100--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic001G375100--Sobic002G008900 Sobic007G198300 Sobic007G198300 Sobic001G375100--Sobic007G198300 Sobic005G001000 Sobic005G001000 Sobic001G375100--Sobic005G001000 Sobic002G359400 Sobic002G359400 Sobic002G305000--Sobic002G359400 Sobic009G201300 Sobic009G201300 Sobic002G305000--Sobic009G201300 Sobic002G305000--Sobic003G354600 Sobic010G147100 Sobic010G147100 Sobic002G305000--Sobic010G147100 Sobic001G355800 Sobic001G355800 Sobic002G305000--Sobic001G355800 Sobic006G175800 Sobic006G175800 Sobic002G305000--Sobic006G175800 Sobic002G305000--Sobic001G303100 Sobic010G074300 Sobic010G074300 Sobic002G305000--Sobic010G074300 Sobic003G220800 Sobic003G220800 Sobic002G305000--Sobic003G220800 Sobic006G064100--Sobic010G205100 Sobic006G064100--Sobic001G531500 Sobic002G403600 Sobic002G403600 Sobic006G064100--Sobic002G403600 Sobic006G064100--Sobic001G073900 Sobic006G120500 Sobic006G120500 Sobic006G064100--Sobic006G120500 Sobic004G317500 Sobic004G317500 Sobic006G064100--Sobic004G317500 Sobic001G305600 Sobic001G305600 Sobic006G064100--Sobic001G305600 Sobic006G064100--Sobic003G036200 Sobic006G064100--Sobic010G085100 Sobic010G275700 Sobic010G275700 Sobic003G021100--Sobic010G275700 Sobic003G021100--Sobic005G101200 Sobic004G281800 Sobic004G281800 Sobic003G021100--Sobic004G281800 Sobic004G189800 Sobic004G189800 Sobic003G021100--Sobic004G189800 Sobic003G021100--Sobic009G038900 Sobic010G251700 Sobic010G251700 Sobic003G021100--Sobic010G251700 Sobic003G021100--Sobic010G085100 Sobic004G027600 Sobic004G027600 Sobic003G021100--Sobic004G027600 Sobic003G021100--Sobic008G130000
Octagon: transcription factors


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