Gene annotation
Transcriptome id Sobic.010G217600.1,Sobic.010G217600.2
Synonym
Functional annotation PHD-finger domain containing protein, putative, expressed
UniProt A0A194YKQ2
Pfam PF00628 PF01448
Panther DB PTHR10615 PTHR10615:SF117
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G19260 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os04g34720.1,LOC_Os04g34720.2 : PHD-finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a041986
Brachypodium -
Barley HORVU7Hr1G109990.19 , HORVU7Hr1G109990.17 , HORVU7Hr1G109990.15 , HORVU7Hr1G109990.14 , HORVU7Hr1G109990.13 , HORVU7Hr1G109990.12 , HORVU7Hr1G109990.11 , HORVU7Hr1G109990.10 , HORVU7Hr1G109990.7 , HORVU7Hr1G109990.6 , HORVU7Hr1G109990.5 , HORVU7Hr1G109990.4 , HORVU7Hr1G109990.3 , HORVU7Hr1G109990.9 , HORVU7Hr1G109990.8
Wheat TraesCS7B02G393900 , TraesCS7B02G393900 , TraesCS7B02G393900 , TraesCS7B02G393900 , TraesCS7D02G477000 , TraesCS7D02G477000 , TraesCS7D02G477000 , TraesCS7A02G490700 , TraesCS7A02G490700 , TraesCS7A02G490700 , TraesCS7A02G490700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G019000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized membrane protein, putative, expressed -
2 Sobic.004G334300 ATMAK10, putative, expressed -
3 Sobic.001G303100 expressed protein -
4 Sobic.001G381600 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
5 Sobic.001G066500 zinc ion binding protein, putative, expressed -
6 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
7 Sobic.009G255700 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
8 Sobic.010G227800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@metal transporter Nramp6, putative, expressed -
9 Sobic.004G244900 expressed protein -
10 Sobic.007G010700 OsFBL6 - F-box domain and LRR containing protein, expressed -
11 Sobic.003G021100 expressed protein -
12 Sobic.003G119600 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.001G519900 ribonuclease protein, putative, expressed K12585: DIS3, exosome complex exonuclease DIS3/RRP44
14 Sobic.006G043400 - -
15 Sobic.006G259800 inducer of CBF expression 2, putative, expressed -
16 Sobic.009G201300 - -
17 Sobic.001G439300 AGAP009131-PA, putative, expressed K18826: calmodulin-lysine N-methyltransferase
18 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
19 Sobic.006G240400 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3


Gene co-expression network
sample Sobic010G217600 Sobic010G217600 Sobic010G019000 Sobic010G019000 Sobic010G217600--Sobic010G019000 Sobic004G334300 Sobic004G334300 Sobic010G217600--Sobic004G334300 Sobic001G303100 Sobic001G303100 Sobic010G217600--Sobic001G303100 Sobic001G381600 Sobic001G381600 Sobic010G217600--Sobic001G381600 Sobic001G066500 Sobic001G066500 Sobic010G217600--Sobic001G066500 Sobic002G305000 Sobic002G305000 Sobic010G217600--Sobic002G305000 Sobic009G255700 Sobic009G255700 Sobic010G217600--Sobic009G255700 Sobic010G227800 Sobic010G227800 Sobic010G217600--Sobic010G227800 Sobic004G244900 Sobic004G244900 Sobic010G217600--Sobic004G244900 Sobic010G019000--Sobic010G217600 Sobic004G281800 Sobic004G281800 Sobic010G019000--Sobic004G281800 Sobic003G021100 Sobic003G021100 Sobic010G019000--Sobic003G021100 Sobic001G352400 Sobic001G352400 Sobic010G019000--Sobic001G352400 Sobic010G019000--Sobic002G305000 Sobic010G275700 Sobic010G275700 Sobic010G019000--Sobic010G275700 Sobic010G019000--Sobic001G303100 Sobic001G214100 Sobic001G214100 Sobic010G019000--Sobic001G214100 Sobic009G038900 Sobic009G038900 Sobic010G019000--Sobic009G038900 Sobic003G186000 Sobic003G186000 Sobic004G334300--Sobic003G186000 Sobic008G001200 Sobic008G001200 Sobic004G334300--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic004G334300--Sobic001G457800 Sobic006G040500 Sobic006G040500 Sobic004G334300--Sobic006G040500 Sobic010G123600 Sobic010G123600 Sobic004G334300--Sobic010G123600 Sobic002G308700 Sobic002G308700 Sobic004G334300--Sobic002G308700 Sobic005G162500 Sobic005G162500 Sobic004G334300--Sobic005G162500 Sobic004G334300--Sobic004G244900 Sobic004G276400 Sobic004G276400 Sobic004G334300--Sobic004G276400 Sobic001G133000 Sobic001G133000 Sobic001G303100--Sobic001G133000 Sobic009G201300 Sobic009G201300 Sobic001G303100--Sobic009G201300 Sobic006G185100 Sobic006G185100 Sobic001G303100--Sobic006G185100 Sobic001G303100--Sobic009G038900 Sobic001G303100--Sobic002G305000 Sobic006G219600 Sobic006G219600 Sobic001G303100--Sobic006G219600 Sobic001G303100--Sobic004G244900 Sobic005G084500 Sobic005G084500 Sobic001G303100--Sobic005G084500 Sobic001G303100--Sobic001G381600 Sobic008G151100 Sobic008G151100 Sobic001G381600--Sobic008G151100 Sobic001G381600--Sobic009G201300 Sobic007G198300 Sobic007G198300 Sobic001G381600--Sobic007G198300 Sobic006G002300 Sobic006G002300 Sobic001G381600--Sobic006G002300 Sobic003G115900 Sobic003G115900 Sobic001G381600--Sobic003G115900 Sobic001G212300 Sobic001G212300 Sobic001G381600--Sobic001G212300 Sobic001G381600--Sobic009G038900 Sobic003G198800 Sobic003G198800 Sobic001G381600--Sobic003G198800 Sobic003G155100 Sobic003G155100 Sobic001G381600--Sobic003G155100 Sobic006G043400 Sobic006G043400 Sobic001G066500--Sobic006G043400 Sobic003G185400 Sobic003G185400 Sobic001G066500--Sobic003G185400 Sobic001G066500--Sobic010G217600 Sobic001G066500--Sobic004G334300 Sobic001G519900 Sobic001G519900 Sobic001G066500--Sobic001G519900 Sobic010G102600 Sobic010G102600 Sobic001G066500--Sobic010G102600 Sobic004G253700 Sobic004G253700 Sobic001G066500--Sobic004G253700 SobicK025800 SobicK025800 Sobic001G066500--SobicK025800 Sobic010G169600 Sobic010G169600 Sobic001G066500--Sobic010G169600 Sobic002G359400 Sobic002G359400 Sobic002G305000--Sobic002G359400 Sobic002G305000--Sobic009G201300 Sobic003G354600 Sobic003G354600 Sobic002G305000--Sobic003G354600 Sobic010G147100 Sobic010G147100 Sobic002G305000--Sobic010G147100 Sobic001G355800 Sobic001G355800 Sobic002G305000--Sobic001G355800 Sobic006G175800 Sobic006G175800 Sobic002G305000--Sobic006G175800 Sobic002G305000--Sobic001G303100 Sobic010G074300 Sobic010G074300 Sobic002G305000--Sobic010G074300 Sobic003G220800 Sobic003G220800 Sobic002G305000--Sobic003G220800 Sobic001G192000 Sobic001G192000 Sobic009G255700--Sobic001G192000 Sobic008G088872 Sobic008G088872 Sobic009G255700--Sobic008G088872 Sobic002G275700 Sobic002G275700 Sobic009G255700--Sobic002G275700 Sobic001G370900 Sobic001G370900 Sobic009G255700--Sobic001G370900 Sobic009G255700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic009G255700--Sobic006G184900 Sobic009G255700--Sobic002G308700 Sobic002G335600 Sobic002G335600 Sobic009G255700--Sobic002G335600 Sobic009G255700--Sobic004G244900 Sobic002G128200 Sobic002G128200 Sobic010G227800--Sobic002G128200 Sobic007G201500 Sobic007G201500 Sobic010G227800--Sobic007G201500 Sobic010G205100 Sobic010G205100 Sobic010G227800--Sobic010G205100 Sobic010G227800--Sobic010G217600 Sobic005G053200 Sobic005G053200 Sobic010G227800--Sobic005G053200 Sobic001G375100 Sobic001G375100 Sobic010G227800--Sobic001G375100 Sobic010G227800--Sobic002G305000 Sobic006G064100 Sobic006G064100 Sobic010G227800--Sobic006G064100 Sobic010G227800--Sobic003G021100 Sobic004G244900--Sobic001G457800 Sobic004G244900--Sobic004G334300 Sobic003G119600 Sobic003G119600 Sobic004G244900--Sobic003G119600 Sobic004G244900--Sobic003G155100 Sobic004G244900--Sobic008G001200 Sobic004G356700 Sobic004G356700 Sobic004G244900--Sobic004G356700 Sobic004G244900--Sobic009G201300 Sobic004G244900--Sobic002G275700 Sobic003G168100 Sobic003G168100 Sobic004G244900--Sobic003G168100
Octagon: transcription factors


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