Gene annotation
Transcriptome id Sobic.006G240400.1
Synonym Sb06g030650
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5Y926
Pfam PF13639
Panther DB PTHR14155:SF72 PTHR14155
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G45180 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os04g55510.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a057198 , Zm00025a009546 , Zm00025a031329
Brachypodium KQJ84990 , KQJ84989 , PNT62014
Barley -
Wheat TraesCS2B02G542200 , TraesCS2B02G542200
Populus -


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cDNA sequences
Sobic.006G240400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G020800 aminotransferase, classes I and II, domain containing protein, expressed K14270: aminotransferase
2 Sobic.001G446850 - -
3 Sobic.003G190400 rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed -
4 Sobic.010G131900 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
5 Sobic.006G166100 GATA zinc finger domain containing protein, expressed -
6 Sobic.004G231900 ribonuclease protein, putative, expressed K18758: DIS3-like exonuclease 2
7 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
8 Sobic.010G217600 PHD-finger domain containing protein, putative, expressed -
9 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
10 Sobic.010G227800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@metal transporter Nramp6, putative, expressed -
11 Sobic.010G074300 smr domain containing protein, expressed -
12 Sobic.001G352400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
14 Sobic.009G084000 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
15 Sobic.004G143475 - -
16 Sobic.007G190000 expressed protein -
17 Sobic.004G189200 OsFBK9 - F-box domain and kelch repeat containing protein, expressed -
18 Sobic.003G220800 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
19 Sobic.003G301900 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
20 Sobic.006G214300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Putative leucine-rich repeatcontaining protein DDB_G0290503(PubMedID : 31721651)@- -


Gene co-expression network
sample Sobic006G240400 Sobic006G240400 Sobic010G020800 Sobic010G020800 Sobic006G240400--Sobic010G020800 Sobic001G446850 Sobic001G446850 Sobic006G240400--Sobic001G446850 Sobic003G190400 Sobic003G190400 Sobic006G240400--Sobic003G190400 Sobic010G131900 Sobic010G131900 Sobic006G240400--Sobic010G131900 Sobic006G166100 Sobic006G166100 Sobic006G240400--Sobic006G166100 Sobic004G231900 Sobic004G231900 Sobic006G240400--Sobic004G231900 Sobic003G107500 Sobic003G107500 Sobic006G240400--Sobic003G107500 Sobic010G217600 Sobic010G217600 Sobic006G240400--Sobic010G217600 Sobic004G001500 Sobic004G001500 Sobic006G240400--Sobic004G001500 Sobic010G020800--Sobic003G190400 Sobic001G517800 Sobic001G517800 Sobic010G020800--Sobic001G517800 Sobic010G020800--Sobic004G001500 Sobic007G190000 Sobic007G190000 Sobic010G020800--Sobic007G190000 Sobic002G146300 Sobic002G146300 Sobic010G020800--Sobic002G146300 Sobic003G301900 Sobic003G301900 Sobic010G020800--Sobic003G301900 Sobic009G011600 Sobic009G011600 Sobic010G020800--Sobic009G011600 Sobic010G020800--Sobic001G446850 Sobic010G020800--Sobic006G240400 Sobic001G446850--Sobic004G231900 Sobic003G316500 Sobic003G316500 Sobic001G446850--Sobic003G316500 Sobic001G446850--Sobic004G001500 Sobic001G446850--Sobic002G146300 Sobic001G446850--Sobic010G020800 Sobic001G446850--Sobic007G190000 Sobic002G311100 Sobic002G311100 Sobic001G446850--Sobic002G311100 Sobic009G201300 Sobic009G201300 Sobic001G446850--Sobic009G201300 Sobic009G074400 Sobic009G074400 Sobic001G446850--Sobic009G074400 Sobic003G190400--Sobic010G020800 Sobic003G190400--Sobic003G301900 Sobic002G187700 Sobic002G187700 Sobic003G190400--Sobic002G187700 Sobic005G084500 Sobic005G084500 Sobic003G190400--Sobic005G084500 Sobic003G190400--Sobic007G190000 Sobic004G356700 Sobic004G356700 Sobic003G190400--Sobic004G356700 Sobic003G190400--Sobic002G146300 Sobic004G169000 Sobic004G169000 Sobic003G190400--Sobic004G169000 Sobic006G002300 Sobic006G002300 Sobic003G190400--Sobic006G002300 Sobic009G084000 Sobic009G084000 Sobic010G131900--Sobic009G084000 Sobic010G131900--Sobic002G311100 Sobic010G074300 Sobic010G074300 Sobic010G131900--Sobic010G074300 Sobic002G263600 Sobic002G263600 Sobic010G131900--Sobic002G263600 Sobic010G147100 Sobic010G147100 Sobic010G131900--Sobic010G147100 Sobic003G365300 Sobic003G365300 Sobic010G131900--Sobic003G365300 Sobic009G068500 Sobic009G068500 Sobic010G131900--Sobic009G068500 Sobic003G264100 Sobic003G264100 Sobic010G131900--Sobic003G264100 Sobic001G203900 Sobic001G203900 Sobic010G131900--Sobic001G203900 Sobic001G375100 Sobic001G375100 Sobic006G166100--Sobic001G375100 Sobic002G128200 Sobic002G128200 Sobic006G166100--Sobic002G128200 Sobic006G166100--Sobic003G301900 Sobic010G099700 Sobic010G099700 Sobic006G166100--Sobic010G099700 Sobic002G305000 Sobic002G305000 Sobic006G166100--Sobic002G305000 Sobic009G135000 Sobic009G135000 Sobic006G166100--Sobic009G135000 Sobic007G201500 Sobic007G201500 Sobic006G166100--Sobic007G201500 Sobic006G166100--Sobic010G074300 Sobic006G166100--Sobic007G190000 Sobic006G219600 Sobic006G219600 Sobic004G231900--Sobic006G219600 Sobic006G051800 Sobic006G051800 Sobic004G231900--Sobic006G051800 Sobic004G231900--Sobic009G074400 Sobic004G146600 Sobic004G146600 Sobic004G231900--Sobic004G146600 Sobic008G167600 Sobic008G167600 Sobic004G231900--Sobic008G167600 Sobic004G231900--Sobic004G001500 Sobic004G231900--Sobic001G446850 Sobic004G189200 Sobic004G189200 Sobic004G231900--Sobic004G189200 Sobic004G312600 Sobic004G312600 Sobic004G231900--Sobic004G312600 Sobic003G107500--Sobic004G001500 Sobic002G043800 Sobic002G043800 Sobic003G107500--Sobic002G043800 Sobic002G383600 Sobic002G383600 Sobic003G107500--Sobic002G383600 Sobic001G310100 Sobic001G310100 Sobic003G107500--Sobic001G310100 Sobic003G107500--Sobic004G146600 Sobic003G298200 Sobic003G298200 Sobic003G107500--Sobic003G298200 Sobic003G373500 Sobic003G373500 Sobic003G107500--Sobic003G373500 Sobic005G187300 Sobic005G187300 Sobic003G107500--Sobic005G187300 Sobic010G014100 Sobic010G014100 Sobic003G107500--Sobic010G014100 Sobic010G019000 Sobic010G019000 Sobic010G217600--Sobic010G019000 Sobic004G334300 Sobic004G334300 Sobic010G217600--Sobic004G334300 Sobic001G303100 Sobic001G303100 Sobic010G217600--Sobic001G303100 Sobic001G381600 Sobic001G381600 Sobic010G217600--Sobic001G381600 Sobic001G066500 Sobic001G066500 Sobic010G217600--Sobic001G066500 Sobic010G217600--Sobic002G305000 Sobic009G255700 Sobic009G255700 Sobic010G217600--Sobic009G255700 Sobic010G227800 Sobic010G227800 Sobic010G217600--Sobic010G227800 Sobic004G244900 Sobic004G244900 Sobic010G217600--Sobic004G244900 Sobic004G001500--Sobic002G146300 Sobic003G043200 Sobic003G043200 Sobic004G001500--Sobic003G043200 Sobic004G001500--Sobic005G187300 Sobic001G370900 Sobic001G370900 Sobic004G001500--Sobic001G370900 Sobic001G457800 Sobic001G457800 Sobic004G001500--Sobic001G457800 Sobic009G256400 Sobic009G256400 Sobic004G001500--Sobic009G256400 Sobic003G166750 Sobic003G166750 Sobic004G001500--Sobic003G166750 Sobic004G001500--Sobic004G356700 Sobic001G527800 Sobic001G527800 Sobic004G001500--Sobic001G527800
Octagon: transcription factors


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