Gene annotation
Transcriptome id Sobic.006G214300.1
Synonym SORBI_3006G214300, Sb06g028450, SORBIDRAFT_06g028450
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Putative leucine-rich repeatcontaining protein DDB_G0290503 (PubMedID : 31721651)
-
UniProt C5YG07
Pfam -
Panther DB -
NCBI CDD KOG4674; Uncharacterized conserved coiled-coil protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G32240 : -
RAP-DB (Rice) LOC_Os04g52460.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a009800 , Zm00025a057023
Brachypodium KQJ84585 , KQJ84584
Barley HORVU2Hr1G098860.3 , HORVU2Hr1G098860.2 , HORVU2Hr1G098860.1 , HORVU2Hr1G098860.4
Wheat TraesCS2B02G440200 , TraesCS2B02G440200 , TraesCS2B02G440200 , TraesCS2B02G440200 , TraesCS2D02G418200 , TraesCS2D02G418200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
2 Sobic.001G244600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KIP1, putative, expressed -
3 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.003G314000 jacalin-like lectin domain containing protein, expressed -
5 Sobic.002G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@integral membrane transporter family protein, putative, expressed -
6 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
7 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
8 Sobic.004G322600 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain(PubMedID : 26465154)@protein kinase domain containing protein, expressed -
9 Sobic.009G100700 - -
10 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
11 Sobic.003G355200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mannose-1-phosphate guanyltransferase, putative, expressed K00966: mannose-1-phosphate guanylyltransferase
12 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
13 Sobic.004G322700 - -
14 Sobic.002G056500 with no lysine (K) kinase 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
15 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
16 Sobic.006G153400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, AFG1 family domain containing protein, expressed -
17 Sobic.010G275700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
18 Sobic.007G227100 expressed protein -
19 Sobic.003G139500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CDPK - CBL-interacting protein kinase 1(PubMedID : 31721651)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
20 Sobic.010G104800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase


Gene co-expression network
sample Sobic006G214300 Sobic006G214300 Sobic005G101200 Sobic005G101200 Sobic006G214300--Sobic005G101200 Sobic001G244600 Sobic001G244600 Sobic006G214300--Sobic001G244600 Sobic009G194500 Sobic009G194500 Sobic006G214300--Sobic009G194500 Sobic003G314000 Sobic003G314000 Sobic006G214300--Sobic003G314000 Sobic002G119100 Sobic002G119100 Sobic006G214300--Sobic002G119100 Sobic005G068700 Sobic005G068700 Sobic006G214300--Sobic005G068700 Sobic009G038900 Sobic009G038900 Sobic006G214300--Sobic009G038900 Sobic004G322600 Sobic004G322600 Sobic006G214300--Sobic004G322600 Sobic009G100700 Sobic009G100700 Sobic006G214300--Sobic009G100700 Sobic004G189800 Sobic004G189800 Sobic005G101200--Sobic004G189800 Sobic005G101200--Sobic005G068700 Sobic002G404800 Sobic002G404800 Sobic005G101200--Sobic002G404800 Sobic001G258200 Sobic001G258200 Sobic005G101200--Sobic001G258200 Sobic005G101200--Sobic009G038900 Sobic007G105500 Sobic007G105500 Sobic005G101200--Sobic007G105500 Sobic003G185900 Sobic003G185900 Sobic005G101200--Sobic003G185900 Sobic010G085100 Sobic010G085100 Sobic005G101200--Sobic010G085100 Sobic004G281800 Sobic004G281800 Sobic005G101200--Sobic004G281800 Sobic008G129900 Sobic008G129900 Sobic001G244600--Sobic008G129900 Sobic010G104800 Sobic010G104800 Sobic001G244600--Sobic010G104800 Sobic006G161500 Sobic006G161500 Sobic001G244600--Sobic006G161500 Sobic009G256100 Sobic009G256100 Sobic001G244600--Sobic009G256100 Sobic001G073300 Sobic001G073300 Sobic001G244600--Sobic001G073300 Sobic007G058100 Sobic007G058100 Sobic001G244600--Sobic007G058100 Sobic001G217900 Sobic001G217900 Sobic001G244600--Sobic001G217900 Sobic008G038500 Sobic008G038500 Sobic001G244600--Sobic008G038500 Sobic010G231300 Sobic010G231300 Sobic001G244600--Sobic010G231300 Sobic009G194500--Sobic002G119100 Sobic009G194500--Sobic006G161500 Sobic009G194500--Sobic010G231300 Sobic009G194500--Sobic004G322600 Sobic009G194500--Sobic008G038500 Sobic009G194500--Sobic003G314000 Sobic007G140700 Sobic007G140700 Sobic009G194500--Sobic007G140700 Sobic004G127800 Sobic004G127800 Sobic009G194500--Sobic004G127800 Sobic006G235400 Sobic006G235400 Sobic009G194500--Sobic006G235400 Sobic003G314000--Sobic009G194500 Sobic003G314000--Sobic010G231300 Sobic002G056500 Sobic002G056500 Sobic003G314000--Sobic002G056500 Sobic003G314000--Sobic008G129900 Sobic003G314000--Sobic002G119100 Sobic003G314000--Sobic001G244600 Sobic003G314000--Sobic004G322600 Sobic003G314000--Sobic010G104800 Sobic003G314000--Sobic006G161500 Sobic002G119100--Sobic009G194500 Sobic002G119100--Sobic004G322600 Sobic002G119100--Sobic006G161500 Sobic002G119100--Sobic008G038500 Sobic002G119100--Sobic004G127800 Sobic002G119100--Sobic001G244600 Sobic004G322700 Sobic004G322700 Sobic002G119100--Sobic004G322700 Sobic007G227100 Sobic007G227100 Sobic002G119100--Sobic007G227100 Sobic002G293500 Sobic002G293500 Sobic002G119100--Sobic002G293500 Sobic005G068700--Sobic001G258200 Sobic005G068700--Sobic005G101200 Sobic005G068700--Sobic003G185900 Sobic005G068700--Sobic002G056500 Sobic005G068700--Sobic008G129900 Sobic008G033000 Sobic008G033000 Sobic005G068700--Sobic008G033000 Sobic005G068700--Sobic001G217900 Sobic002G390100 Sobic002G390100 Sobic005G068700--Sobic002G390100 Sobic002G206300 Sobic002G206300 Sobic005G068700--Sobic002G206300 Sobic009G038900--Sobic004G281800 Sobic009G038900--Sobic005G101200 Sobic005G106600 Sobic005G106600 Sobic009G038900--Sobic005G106600 Sobic009G038900--Sobic005G068700 Sobic004G042200 Sobic004G042200 Sobic009G038900--Sobic004G042200 Sobic003G220100 Sobic003G220100 Sobic009G038900--Sobic003G220100 Sobic001G333800 Sobic001G333800 Sobic009G038900--Sobic001G333800 Sobic001G359300 Sobic001G359300 Sobic009G038900--Sobic001G359300 Sobic009G038900--Sobic010G085100 Sobic004G322600--Sobic004G322700 Sobic004G322600--Sobic002G119100 Sobic004G322600--Sobic006G161500 Sobic004G322600--Sobic009G194500 Sobic004G035100 Sobic004G035100 Sobic004G322600--Sobic004G035100 Sobic004G322600--Sobic008G038500 Sobic001G331600 Sobic001G331600 Sobic004G322600--Sobic001G331600 Sobic004G322600--Sobic007G227100 Sobic004G322600--Sobic001G244600 Sobic009G100700--Sobic009G194500 Sobic009G100700--Sobic002G119100 Sobic009G100700--Sobic006G214300 Sobic009G100700--Sobic004G322600 Sobic004G312600 Sobic004G312600 Sobic009G100700--Sobic004G312600 Sobic009G100700--Sobic008G038500 Sobic009G100700--Sobic004G127800 Sobic005G095000 Sobic005G095000 Sobic009G100700--Sobic005G095000 Sobic010G131700 Sobic010G131700 Sobic009G100700--Sobic010G131700
Octagon: transcription factors


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