Gene annotation
Transcriptome id Sobic.010G020800.1
Synonym ACS12, Sb10g001990
Functional annotation aminotransferase, classes I and II, domain containing protein, expressed
UniProt C5Z3A4
Pfam PF00155
Panther DB PTHR11751 PTHR11751:SF411
NCBI CDD -
KEGG Orthology K14270; aminotransferase
Gene Ontology GO:0009058; biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G51690 : 1-amino-cyclopropane-1-carboxylate synthase 12
RAP-DB (Rice) LOC_Os06g03990.1 : aminotransferase, classes I and II, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a050174
Brachypodium KQK19711
Barley HORVU0Hr1G031810.20 , HORVU2Hr1G119710.1 , HORVU0Hr1G031810.1 , HORVU0Hr1G031810.3 , HORVU0Hr1G031810.2 , HORVU0Hr1G031810.5 , HORVU0Hr1G031810.4 , HORVU0Hr1G031810.7 , HORVU0Hr1G031810.6 , HORVU0Hr1G031810.8 , HORVU7Hr1G053970.1 , HORVU7Hr1G053970.2 , HORVU7Hr1G012940.7 , HORVU7Hr1G012940.2 , HORVU7Hr1G012940.1 , HORVU7Hr1G012940.9 , HORVU7Hr1G012940.8 , HORVU7Hr1G012940.10 , HORVU4Hr1G083690.21 , HORVU4Hr1G083690.23
Wheat TraesCS7A02G066400 , TraesCS4A02G422900 , TraesCS7D02G060600 , TraesCS7D02G060600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G190400 rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed -
2 Sobic.001G517800 NIN, putative, expressed -
3 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
4 Sobic.007G190000 expressed protein -
5 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
6 Sobic.003G301900 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
7 Sobic.009G011600 expressed protein -
8 Sobic.001G446850 - -
9 Sobic.006G240400 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
11 Sobic.004G143475 - -
12 Sobic.005G149700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
13 Sobic.004G034600 hydrolase, alpha/beta fold family domain containing protein, expressed -
14 Sobic.005G149200 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
15 Sobic.008G167600 VTC2, putative, expressed -
16 Sobic.004G231900 ribonuclease protein, putative, expressed K18758: DIS3-like exonuclease 2
17 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
18 Sobic.002G128200 Regulator of chromosome condensation (RCC1) family protein(PubMedID : 26465154)@Regulator of chromosome condensation domain containing protein, expressed -
19 Sobic.003G043200 EMB2410, putative, expressed -
20 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10


Gene co-expression network
sample Sobic010G020800 Sobic010G020800 Sobic003G190400 Sobic003G190400 Sobic010G020800--Sobic003G190400 Sobic001G517800 Sobic001G517800 Sobic010G020800--Sobic001G517800 Sobic004G001500 Sobic004G001500 Sobic010G020800--Sobic004G001500 Sobic007G190000 Sobic007G190000 Sobic010G020800--Sobic007G190000 Sobic002G146300 Sobic002G146300 Sobic010G020800--Sobic002G146300 Sobic003G301900 Sobic003G301900 Sobic010G020800--Sobic003G301900 Sobic009G011600 Sobic009G011600 Sobic010G020800--Sobic009G011600 Sobic001G446850 Sobic001G446850 Sobic010G020800--Sobic001G446850 Sobic006G240400 Sobic006G240400 Sobic010G020800--Sobic006G240400 Sobic003G190400--Sobic010G020800 Sobic003G190400--Sobic003G301900 Sobic002G187700 Sobic002G187700 Sobic003G190400--Sobic002G187700 Sobic005G084500 Sobic005G084500 Sobic003G190400--Sobic005G084500 Sobic003G190400--Sobic007G190000 Sobic004G356700 Sobic004G356700 Sobic003G190400--Sobic004G356700 Sobic003G190400--Sobic002G146300 Sobic004G169000 Sobic004G169000 Sobic003G190400--Sobic004G169000 Sobic006G002300 Sobic006G002300 Sobic003G190400--Sobic006G002300 Sobic001G459600 Sobic001G459600 Sobic001G517800--Sobic001G459600 Sobic001G517800--Sobic003G301900 Sobic004G034600 Sobic004G034600 Sobic001G517800--Sobic004G034600 Sobic001G517800--Sobic010G020800 Sobic001G517800--Sobic009G011600 Sobic005G149200 Sobic005G149200 Sobic001G517800--Sobic005G149200 Sobic003G320700 Sobic003G320700 Sobic001G517800--Sobic003G320700 Sobic003G322700 Sobic003G322700 Sobic001G517800--Sobic003G322700 Sobic001G517800--Sobic002G146300 Sobic004G001500--Sobic002G146300 Sobic003G043200 Sobic003G043200 Sobic004G001500--Sobic003G043200 Sobic005G187300 Sobic005G187300 Sobic004G001500--Sobic005G187300 Sobic001G370900 Sobic001G370900 Sobic004G001500--Sobic001G370900 Sobic001G457800 Sobic001G457800 Sobic004G001500--Sobic001G457800 Sobic009G256400 Sobic009G256400 Sobic004G001500--Sobic009G256400 Sobic003G166750 Sobic003G166750 Sobic004G001500--Sobic003G166750 Sobic004G001500--Sobic004G356700 Sobic001G527800 Sobic001G527800 Sobic004G001500--Sobic001G527800 Sobic010G074300 Sobic010G074300 Sobic007G190000--Sobic010G074300 Sobic004G179300 Sobic004G179300 Sobic007G190000--Sobic004G179300 Sobic003G372500 Sobic003G372500 Sobic007G190000--Sobic003G372500 Sobic010G227100 Sobic010G227100 Sobic007G190000--Sobic010G227100 Sobic007G190000--Sobic002G146300 Sobic007G190000--Sobic010G020800 Sobic009G074400 Sobic009G074400 Sobic007G190000--Sobic009G074400 Sobic010G147100 Sobic010G147100 Sobic007G190000--Sobic010G147100 Sobic004G189200 Sobic004G189200 Sobic007G190000--Sobic004G189200 Sobic003G205200 Sobic003G205200 Sobic002G146300--Sobic003G205200 Sobic002G146300--Sobic001G370900 Sobic010G139600 Sobic010G139600 Sobic002G146300--Sobic010G139600 Sobic005G001000 Sobic005G001000 Sobic002G146300--Sobic005G001000 Sobic002G146300--Sobic004G001500 Sobic008G001200 Sobic008G001200 Sobic002G146300--Sobic008G001200 Sobic001G194200 Sobic001G194200 Sobic002G146300--Sobic001G194200 Sobic007G075400 Sobic007G075400 Sobic002G146300--Sobic007G075400 Sobic002G146300--Sobic009G256400 Sobic003G301900--Sobic002G146300 Sobic003G301900--Sobic001G517800 Sobic003G301900--Sobic010G139600 Sobic003G301900--Sobic003G190400 Sobic003G301900--Sobic005G149200 Sobic003G301900--Sobic003G320700 Sobic006G219600 Sobic006G219600 Sobic003G301900--Sobic006G219600 Sobic006G087700 Sobic006G087700 Sobic003G301900--Sobic006G087700 Sobic003G301900--Sobic007G190000 Sobic009G011600--Sobic004G034600 Sobic009G011600--Sobic001G517800 Sobic001G496100 Sobic001G496100 Sobic009G011600--Sobic001G496100 Sobic005G149700 Sobic005G149700 Sobic009G011600--Sobic005G149700 Sobic009G011600--Sobic010G020800 Sobic007G169300 Sobic007G169300 Sobic009G011600--Sobic007G169300 Sobic002G249300 Sobic002G249300 Sobic009G011600--Sobic002G249300 Sobic009G011600--Sobic005G149200 Sobic010G043100 Sobic010G043100 Sobic009G011600--Sobic010G043100 Sobic004G231900 Sobic004G231900 Sobic001G446850--Sobic004G231900 Sobic003G316500 Sobic003G316500 Sobic001G446850--Sobic003G316500 Sobic001G446850--Sobic004G001500 Sobic001G446850--Sobic002G146300 Sobic001G446850--Sobic010G020800 Sobic001G446850--Sobic007G190000 Sobic002G311100 Sobic002G311100 Sobic001G446850--Sobic002G311100 Sobic009G201300 Sobic009G201300 Sobic001G446850--Sobic009G201300 Sobic001G446850--Sobic009G074400 Sobic006G240400--Sobic010G020800 Sobic006G240400--Sobic001G446850 Sobic006G240400--Sobic003G190400 Sobic010G131900 Sobic010G131900 Sobic006G240400--Sobic010G131900 Sobic006G166100 Sobic006G166100 Sobic006G240400--Sobic006G166100 Sobic006G240400--Sobic004G231900 Sobic003G107500 Sobic003G107500 Sobic006G240400--Sobic003G107500 Sobic010G217600 Sobic010G217600 Sobic006G240400--Sobic010G217600 Sobic006G240400--Sobic004G001500
Octagon: transcription factors


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