Gene annotation
Transcriptome id Sobic.003G043200.3,Sobic.003G043200.4,Sobic.003G043200.1,Sobic.003G043200.2
Synonym emb2410, Sb03g003800
Functional annotation EMB2410, putative, expressed
UniProt A0A1W0VVP2 , A0A1W0VVR8 , A0A1W0VVR4 , A0A1W0VVP4
Pfam PF04357
Panther DB PTHR34457 PTHR34457:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G25660 : embryo defective 2410
RAP-DB (Rice) LOC_Os01g08420.1 : EMB2410, putative, expressed
MaizeGDB (Corn) Zm00025a010733 , Zm00025a023179 , Zm00025a039597 , Zm00025a025913
Brachypodium KQK03011
Barley HORVU3Hr1G022000.9 , HORVU3Hr1G022000.8 , HORVU3Hr1G022000.1 , HORVU3Hr1G022000.3 , HORVU3Hr1G022000.2 , HORVU3Hr1G022000.5 , HORVU3Hr1G022000.4 , HORVU3Hr1G022000.7 , HORVU3Hr1G022000.6 , HORVU3Hr1G022000.18 , HORVU3Hr1G022000.20 , HORVU3Hr1G022000.21 , HORVU3Hr1G022000.22 , HORVU3Hr1G022000.23 , HORVU3Hr1G022000.19 , HORVU3Hr1G022000.15 , HORVU3Hr1G022000.14 , HORVU3Hr1G022000.17 , HORVU3Hr1G022000.16 , HORVU3Hr1G022000.11 , HORVU3Hr1G022000.10 , HORVU3Hr1G022000.13 , HORVU3Hr1G022000.12
Wheat TraesCS3A02G118900 , TraesCS3A02G118900 , TraesCS3D02G120800 , TraesCS3D02G120800 , TraesCS3D02G120800 , TraesCS3B02G137900
Populus -


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cDNA sequences
Sobic.003G043200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
2 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
3 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
4 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
5 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
6 Sobic.003G170700 expressed protein -
7 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
8 Sobic.007G172200 inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase, putative, expressed K18081: myotubularin-related protein 1/2
9 Sobic.003G166750 - K15188: cyclin T
10 Sobic.004G244900 expressed protein -
11 Sobic.004G146600 lipase, putative, expressed -
12 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
13 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
14 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
15 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
16 Sobic.004G356700 oligopeptidase, putative, expressed K01414: oligopeptidase A
17 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
18 Sobic.009G201300 - -
19 Sobic.007G133700 expressed protein -
20 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin


Gene co-expression network
sample Sobic003G043200 Sobic003G043200 Sobic004G001500 Sobic004G001500 Sobic003G043200--Sobic004G001500 Sobic009G256400 Sobic009G256400 Sobic003G043200--Sobic009G256400 Sobic001G457800 Sobic001G457800 Sobic003G043200--Sobic001G457800 Sobic001G370900 Sobic001G370900 Sobic003G043200--Sobic001G370900 Sobic002G146300 Sobic002G146300 Sobic003G043200--Sobic002G146300 Sobic003G170700 Sobic003G170700 Sobic003G043200--Sobic003G170700 Sobic008G001200 Sobic008G001200 Sobic003G043200--Sobic008G001200 Sobic007G172200 Sobic007G172200 Sobic003G043200--Sobic007G172200 Sobic003G166750 Sobic003G166750 Sobic003G043200--Sobic003G166750 Sobic004G001500--Sobic002G146300 Sobic004G001500--Sobic003G043200 Sobic005G187300 Sobic005G187300 Sobic004G001500--Sobic005G187300 Sobic004G001500--Sobic001G370900 Sobic004G001500--Sobic001G457800 Sobic004G001500--Sobic009G256400 Sobic004G001500--Sobic003G166750 Sobic004G356700 Sobic004G356700 Sobic004G001500--Sobic004G356700 Sobic001G527800 Sobic001G527800 Sobic004G001500--Sobic001G527800 Sobic009G256400--Sobic001G457800 Sobic009G256400--Sobic008G001200 Sobic009G256400--Sobic001G370900 Sobic004G291900 Sobic004G291900 Sobic009G256400--Sobic004G291900 Sobic005G001000 Sobic005G001000 Sobic009G256400--Sobic005G001000 Sobic009G256400--Sobic003G166750 Sobic001G194200 Sobic001G194200 Sobic009G256400--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic009G256400--Sobic004G276400 Sobic010G010700 Sobic010G010700 Sobic009G256400--Sobic010G010700 Sobic001G457800--Sobic009G256400 Sobic001G457800--Sobic008G001200 Sobic001G457800--Sobic001G370900 Sobic001G457800--Sobic003G166750 Sobic003G155100 Sobic003G155100 Sobic001G457800--Sobic003G155100 Sobic001G457800--Sobic004G001500 Sobic001G230000 Sobic001G230000 Sobic001G457800--Sobic001G230000 Sobic001G457800--Sobic003G043200 Sobic004G334300 Sobic004G334300 Sobic001G457800--Sobic004G334300 Sobic008G098900 Sobic008G098900 Sobic001G370900--Sobic008G098900 Sobic001G370900--Sobic005G001000 Sobic001G370900--Sobic009G256400 Sobic001G370900--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic001G370900--Sobic003G205200 Sobic001G370900--Sobic001G194200 Sobic001G370900--Sobic004G276400 Sobic001G370900--Sobic008G001200 Sobic001G370900--Sobic001G457800 Sobic002G146300--Sobic003G205200 Sobic002G146300--Sobic001G370900 Sobic010G139600 Sobic010G139600 Sobic002G146300--Sobic010G139600 Sobic002G146300--Sobic005G001000 Sobic002G146300--Sobic004G001500 Sobic002G146300--Sobic008G001200 Sobic002G146300--Sobic001G194200 Sobic007G075400 Sobic007G075400 Sobic002G146300--Sobic007G075400 Sobic002G146300--Sobic009G256400 Sobic003G170700--Sobic009G256400 Sobic008G088872 Sobic008G088872 Sobic003G170700--Sobic008G088872 Sobic003G170700--Sobic001G370900 Sobic003G170700--Sobic001G457800 Sobic005G162500 Sobic005G162500 Sobic003G170700--Sobic005G162500 Sobic003G072200 Sobic003G072200 Sobic003G170700--Sobic003G072200 Sobic001G542400 Sobic001G542400 Sobic003G170700--Sobic001G542400 Sobic006G040500 Sobic006G040500 Sobic003G170700--Sobic006G040500 Sobic004G040500 Sobic004G040500 Sobic003G170700--Sobic004G040500 Sobic008G001200--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G001200--Sobic010G206900 Sobic008G001200--Sobic009G256400 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic001G273700 Sobic001G273700 Sobic007G172200--Sobic001G273700 Sobic007G172200--Sobic001G370900 Sobic007G133700 Sobic007G133700 Sobic007G172200--Sobic007G133700 Sobic003G118200 Sobic003G118200 Sobic007G172200--Sobic003G118200 Sobic007G172200--Sobic009G256400 Sobic003G422500 Sobic003G422500 Sobic007G172200--Sobic003G422500 Sobic007G172200--Sobic005G001000 Sobic009G165700 Sobic009G165700 Sobic007G172200--Sobic009G165700 Sobic008G132600 Sobic008G132600 Sobic007G172200--Sobic008G132600 Sobic003G166750--Sobic009G165700 Sobic003G166750--Sobic008G001200 Sobic003G166750--Sobic009G256400 Sobic003G166750--Sobic001G370900 Sobic001G289800 Sobic001G289800 Sobic003G166750--Sobic001G289800 Sobic002G316600 Sobic002G316600 Sobic003G166750--Sobic002G316600 Sobic003G166750--Sobic001G194200 Sobic003G166750--Sobic001G527800 Sobic003G166750--Sobic001G457800
Octagon: transcription factors


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