Gene annotation
Transcriptome id Sobic.004G057500.2,Sobic.004G057500.6,Sobic.004G057500.7,Sobic.004G057500.8,Sobic.004G057500.5,Sobic.004G057500.1,Sobic.004G057500.4,Sobic.004G057500.3
Synonym
Functional annotation OsMADS1 - MADS-box family gene with MIKCc type-box, expressed
UniProt A0A1Z5R1B8 , A0A194YN09 , A0A1Z5RL37 , A0A194YMW7 , A0A194YMZ3 , A0A1Z5RL26
Pfam PF01486
Panther DB PTHR11945 PTHR11945:SF206
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g11614.1 : OsMADS1 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G102900 NBS-LRR disease resistance protein, putative, expressed -
2 Sobic.005G133600 - -
3 Sobic.010G227800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@metal transporter Nramp6, putative, expressed -
4 Sobic.001G519900 ribonuclease protein, putative, expressed K12585: DIS3, exosome complex exonuclease DIS3/RRP44
5 Sobic.001G279601 - -
6 Sobic.003G174301 - -
7 Sobic.005G053200 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
8 Sobic.002G128200 Regulator of chromosome condensation (RCC1) family protein(PubMedID : 26465154)@Regulator of chromosome condensation domain containing protein, expressed -
9 Sobic.005G149700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.001G542150 - -
11 Sobic.004G034600 hydrolase, alpha/beta fold family domain containing protein, expressed -
12 Sobic.010G175400 - -
13 Sobic.002G249300 auxin efflux carrier component, putative, expressed -
14 Sobic.001G459600 expressed protein -
15 Sobic.009G011600 expressed protein -
16 Sobic.001G000501 - -
17 Sobic.010G020800 aminotransferase, classes I and II, domain containing protein, expressed K14270: aminotransferase
18 Sobic.001G496100 - -
19 Sobic.001G233300 - -
20 Sobic.001G475100 expressed protein -


Gene co-expression network
sample Sobic004G057500 Sobic004G057500 Sobic005G102900 Sobic005G102900 Sobic004G057500--Sobic005G102900 Sobic005G133600 Sobic005G133600 Sobic004G057500--Sobic005G133600 Sobic010G227800 Sobic010G227800 Sobic004G057500--Sobic010G227800 Sobic001G519900 Sobic001G519900 Sobic004G057500--Sobic001G519900 Sobic001G279601 Sobic001G279601 Sobic004G057500--Sobic001G279601 Sobic003G174301 Sobic003G174301 Sobic004G057500--Sobic003G174301 Sobic005G053200 Sobic005G053200 Sobic004G057500--Sobic005G053200 Sobic002G128200 Sobic002G128200 Sobic004G057500--Sobic002G128200 Sobic005G149700 Sobic005G149700 Sobic004G057500--Sobic005G149700 Sobic003G207500 Sobic003G207500 Sobic005G102900--Sobic003G207500 Sobic005G102900--Sobic005G133600 Sobic007G188800 Sobic007G188800 Sobic005G102900--Sobic007G188800 Sobic005G102900--Sobic004G057500 Sobic007G185300 Sobic007G185300 Sobic005G102900--Sobic007G185300 Sobic001G475100 Sobic001G475100 Sobic005G102900--Sobic001G475100 Sobic010G121100 Sobic010G121100 Sobic005G102900--Sobic010G121100 Sobic010G205600 Sobic010G205600 Sobic005G102900--Sobic010G205600 Sobic010G273300 Sobic010G273300 Sobic005G102900--Sobic010G273300 Sobic001G223550 Sobic001G223550 Sobic005G133600--Sobic001G223550 Sobic009G248801 Sobic009G248801 Sobic005G133600--Sobic009G248801 Sobic008G101100 Sobic008G101100 Sobic005G133600--Sobic008G101100 Sobic004G253700 Sobic004G253700 Sobic005G133600--Sobic004G253700 Sobic003G160100 Sobic003G160100 Sobic005G133600--Sobic003G160100 Sobic005G133600--Sobic007G185300 Sobic007G090403 Sobic007G090403 Sobic005G133600--Sobic007G090403 Sobic007G010700 Sobic007G010700 Sobic005G133600--Sobic007G010700 Sobic005G095000 Sobic005G095000 Sobic005G133600--Sobic005G095000 Sobic010G227800--Sobic002G128200 Sobic007G201500 Sobic007G201500 Sobic010G227800--Sobic007G201500 Sobic010G205100 Sobic010G205100 Sobic010G227800--Sobic010G205100 Sobic010G217600 Sobic010G217600 Sobic010G227800--Sobic010G217600 Sobic010G227800--Sobic005G053200 Sobic001G375100 Sobic001G375100 Sobic010G227800--Sobic001G375100 Sobic002G305000 Sobic002G305000 Sobic010G227800--Sobic002G305000 Sobic006G064100 Sobic006G064100 Sobic010G227800--Sobic006G064100 Sobic003G021100 Sobic003G021100 Sobic010G227800--Sobic003G021100 Sobic001G373900 Sobic001G373900 Sobic001G519900--Sobic001G373900 Sobic004G334300 Sobic004G334300 Sobic001G519900--Sobic004G334300 Sobic002G308700 Sobic002G308700 Sobic001G519900--Sobic002G308700 Sobic003G186000 Sobic003G186000 Sobic001G519900--Sobic003G186000 Sobic005G162500 Sobic005G162500 Sobic001G519900--Sobic005G162500 Sobic004G356700 Sobic004G356700 Sobic001G519900--Sobic004G356700 Sobic001G519900--Sobic001G375100 Sobic001G192000 Sobic001G192000 Sobic001G519900--Sobic001G192000 Sobic006G259800 Sobic006G259800 Sobic001G519900--Sobic006G259800 Sobic001G279601--Sobic005G133600 Sobic001G279601--Sobic004G057500 Sobic001G279601--Sobic005G102900 Sobic001G279601--Sobic007G185300 Sobic001G053200 Sobic001G053200 Sobic001G279601--Sobic001G053200 Sobic004G080100 Sobic004G080100 Sobic001G279601--Sobic004G080100 Sobic002G249300 Sobic002G249300 Sobic001G279601--Sobic002G249300 Sobic001G279601--Sobic001G223550 Sobic001G252000 Sobic001G252000 Sobic001G279601--Sobic001G252000 Sobic003G174301--Sobic002G249300 Sobic004G034600 Sobic004G034600 Sobic003G174301--Sobic004G034600 Sobic003G174301--Sobic005G149700 Sobic003G174301--Sobic005G053200 Sobic009G011600 Sobic009G011600 Sobic003G174301--Sobic009G011600 Sobic003G174301--Sobic001G053200 Sobic004G070500 Sobic004G070500 Sobic003G174301--Sobic004G070500 Sobic003G174301--Sobic001G252000 Sobic001G176501 Sobic001G176501 Sobic003G174301--Sobic001G176501 Sobic005G053200--Sobic007G010700 Sobic005G053200--Sobic004G070500 Sobic005G053200--Sobic002G249300 Sobic005G053200--Sobic003G174301 Sobic001G000501 Sobic001G000501 Sobic005G053200--Sobic001G000501 Sobic005G053200--Sobic009G248801 Sobic005G053200--Sobic005G133600 Sobic005G053200--Sobic010G227800 Sobic005G089400 Sobic005G089400 Sobic005G053200--Sobic005G089400 Sobic002G128200--Sobic005G149700 Sobic006G104600 Sobic006G104600 Sobic002G128200--Sobic006G104600 Sobic006G002300 Sobic006G002300 Sobic002G128200--Sobic006G002300 Sobic006G087700 Sobic006G087700 Sobic002G128200--Sobic006G087700 Sobic004G179300 Sobic004G179300 Sobic002G128200--Sobic004G179300 Sobic003G301900 Sobic003G301900 Sobic002G128200--Sobic003G301900 Sobic002G128200--Sobic009G011600 Sobic001G517800 Sobic001G517800 Sobic002G128200--Sobic001G517800 Sobic002G128200--Sobic001G375100 Sobic005G149700--Sobic004G034600 Sobic001G504900 Sobic001G504900 Sobic005G149700--Sobic001G504900 Sobic002G266000 Sobic002G266000 Sobic005G149700--Sobic002G266000 Sobic005G149700--Sobic002G128200 Sobic005G149700--Sobic006G104600 Sobic005G149700--Sobic009G011600 Sobic009G207600 Sobic009G207600 Sobic005G149700--Sobic009G207600 Sobic005G149700--Sobic003G174301 Sobic003G398100 Sobic003G398100 Sobic005G149700--Sobic003G398100
Octagon: transcription factors


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